Wall clock time and date at job start Tue Mar 31 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31695 * 119.72315 * 2 1 4 4 C 1.31922 * 121.88401 * 179.97438 * 3 2 1 5 5 C 1.38358 * 121.07729 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.30604 * 0.28299 * 5 4 3 7 7 C 1.39524 * 119.71307 * 179.97438 * 2 1 3 8 8 C 1.47835 * 120.56268 * 0.02562 * 7 2 1 9 9 O 1.21562 * 119.99854 * 5.97229 * 8 7 2 10 10 N 1.34774 * 120.00617 * 185.97763 * 8 7 2 11 11 C 1.46493 * 120.00513 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47672 * 179.97438 * 11 10 8 13 13 C 1.38240 * 119.99354 * 269.72553 * 12 11 10 14 14 C 1.38235 * 119.99469 * 179.73808 * 13 12 11 15 15 C 1.38239 * 120.00262 * 0.53111 * 14 13 12 16 16 C 1.50701 * 119.99767 * 179.76507 * 15 14 13 17 17 C 1.52991 * 109.47299 * 269.97484 * 16 15 14 18 18 N 1.46499 * 109.47542 * 180.02562 * 17 16 15 19 19 C 1.36938 * 120.00363 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99964 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99609 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00368 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99695 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46929 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47111 * 120.00037 * 23 21 19 26 26 H 1.48494 * 109.47645 * 240.00218 * 23 21 19 27 27 C 1.38232 * 120.00048 * 359.74146 * 15 14 13 28 28 C 1.38228 * 120.00771 * 89.98885 * 12 11 10 29 29 H 1.09000 * 109.47095 * 96.57245 * 1 2 3 30 30 H 1.08998 * 109.47378 * 216.57512 * 1 2 3 31 31 H 1.09005 * 109.46517 * 336.57723 * 1 2 3 32 32 H 1.07996 * 119.46190 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.34304 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.85857 * 179.69508 * 6 5 4 35 35 H 0.97006 * 119.99653 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.46809 * 299.99393 * 11 10 8 37 37 H 1.09000 * 109.47529 * 59.99299 * 11 10 8 38 38 H 1.08001 * 120.00264 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.99830 * 180.29290 * 14 13 12 40 40 H 1.09000 * 109.47198 * 29.98358 * 16 15 14 41 41 H 1.09003 * 109.46752 * 149.97709 * 16 15 14 42 42 H 1.09007 * 109.47472 * 300.00290 * 17 16 15 43 43 H 1.09003 * 109.47035 * 60.00399 * 17 16 15 44 44 H 0.97002 * 119.99657 * 359.97438 * 18 17 16 45 45 H 0.97001 * 119.99248 * 180.02562 * 22 21 19 46 46 H 1.07991 * 120.00361 * 179.97438 * 27 15 14 47 47 H 1.08005 * 119.99628 * 0.02562 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2366 0.0362 0.0016 6 6 3.5987 -1.1915 -0.0038 7 6 2.1985 -1.2118 0.0005 8 6 1.4655 -2.4956 0.0005 9 8 0.2549 -2.5043 -0.1095 10 7 2.1393 -3.6564 0.1226 11 6 1.4130 -4.9286 0.1221 12 6 2.3909 -6.0656 0.2701 13 6 2.9438 -6.6523 -0.8529 14 6 3.8450 -7.6917 -0.7169 15 6 4.1850 -8.1516 0.5416 16 6 5.1634 -9.2882 0.6895 17 6 4.4053 -10.6171 0.6893 18 7 5.3563 -11.7220 0.8337 19 6 4.9054 -13.0148 0.8592 20 1 3.8485 -13.2198 0.7733 21 6 5.8067 -14.0616 0.9955 22 7 7.0947 -13.8118 1.0997 23 14 5.1915 -15.8251 1.0310 24 1 3.7126 -15.8362 0.8964 25 1 5.7961 -16.5830 -0.0938 26 1 5.5766 -16.4580 2.3179 27 6 3.6278 -7.5687 1.6644 28 6 2.7310 -6.5255 1.5285 29 1 -0.3633 -0.1176 -1.0209 30 1 -0.3634 -0.8253 0.6123 31 1 -0.3632 0.9431 0.4085 32 1 3.9735 2.1531 0.0009 33 1 5.3152 0.0907 0.0024 34 1 4.1660 -2.1105 -0.0080 35 1 3.1054 -3.6496 0.2101 36 1 0.7080 -4.9448 0.9532 37 1 0.8701 -5.0368 -0.8169 38 1 2.6746 -6.2961 -1.8363 39 1 4.2805 -8.1469 -1.5941 40 1 5.8680 -9.2717 -0.1420 41 1 5.7067 -9.1800 1.6283 42 1 3.7007 -10.6336 1.5209 43 1 3.8620 -10.7253 -0.2494 44 1 6.3056 -11.5379 0.9105 45 1 7.7245 -14.5434 1.1946 46 1 3.8930 -7.9282 2.6475 47 1 2.2955 -6.0702 2.4057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266085956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:16 Heat of formation + Delta-G solvation = 29.364660 kcal Electronic energy + Delta-G solvation = -26795.745790 eV Core-core repulsion = 22943.251366 eV Total energy + Delta-G solvation = -3852.494424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22160 -39.84523 -39.09753 -35.98444 -34.94936 -33.58113 -33.01912 -32.57629 -31.00189 -30.90340 -28.85557 -27.91417 -25.92575 -24.72743 -23.50964 -22.79333 -22.56602 -21.63021 -21.18182 -20.53144 -18.46461 -17.32294 -17.18998 -16.72520 -16.12034 -15.92759 -15.83189 -15.43389 -15.19249 -14.79797 -14.66794 -14.48044 -13.87687 -13.69147 -13.64484 -13.57986 -13.41559 -13.30188 -12.92027 -12.76030 -12.70073 -12.57176 -12.38651 -12.29758 -11.27688 -11.23549 -11.12937 -10.92664 -10.72292 -10.64341 -10.45570 -10.39077 -10.06293 -9.88399 -9.74918 -9.64848 -9.33854 -8.99306 -8.89370 -8.62674 -6.95498 -5.79317 -3.08315 0.15848 0.66819 1.12166 1.34849 2.43402 2.77367 3.32398 3.41805 3.47579 3.49832 3.71082 3.82066 4.13751 4.17036 4.26242 4.42391 4.53540 4.57471 4.69777 4.89291 4.92209 4.98875 5.06249 5.07212 5.22642 5.36772 5.42699 5.44443 5.46361 5.49425 5.56740 5.65355 5.72041 5.75502 5.80923 5.86710 6.00464 6.02821 6.15630 6.17031 6.23851 6.40170 6.43167 6.56617 6.77711 6.88971 6.93777 7.03124 7.41918 7.68539 7.74870 8.39567 9.50842 10.07835 10.42697 11.43645 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030539 B = 0.001529 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.640598 B =18310.181945 C =18901.952418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.190 3.810 3 N -0.492 5.492 4 C 0.129 3.871 5 C -0.188 4.188 6 C -0.038 4.038 7 C -0.192 4.192 8 C 0.562 3.438 9 O -0.527 6.527 10 N -0.719 5.719 11 C 0.166 3.834 12 C -0.130 4.130 13 C -0.098 4.098 14 C -0.118 4.118 15 C -0.050 4.050 16 C -0.095 4.095 17 C 0.161 3.839 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.118 4.118 28 C -0.098 4.098 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.401 0.599 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.125 0.875 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 31.002 -2.311 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.052 3.948 3 N -0.201 5.201 4 C -0.029 4.029 5 C -0.208 4.208 6 C -0.064 4.064 7 C -0.198 4.198 8 C 0.349 3.651 9 O -0.405 6.405 10 N -0.371 5.371 11 C 0.044 3.956 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.136 4.136 15 C -0.051 4.051 16 C -0.133 4.133 17 C 0.033 3.967 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.136 4.136 28 C -0.117 4.117 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.179 0.821 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.143 0.857 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.842 31.599 -2.393 32.900 hybrid contribution 1.293 -1.824 0.066 2.236 sum -7.549 29.775 -2.327 30.805 Atomic orbital electron populations 1.21072 0.87420 1.03981 1.04320 1.21589 0.97725 0.86519 0.88971 1.67695 1.10014 1.28683 1.13705 1.23048 0.89426 0.98915 0.91464 1.22118 1.02018 0.93009 1.03674 1.21801 0.93105 0.99102 0.92419 1.20775 0.94393 0.94994 1.09605 1.18011 0.87075 0.83311 0.76705 1.90754 1.13392 1.86995 1.49374 1.46046 1.11102 1.05511 1.74442 1.20195 0.92704 0.79554 1.03158 1.19690 1.00594 0.98885 0.93851 1.21022 0.96560 0.96221 0.97870 1.21132 0.98265 0.96866 0.97360 1.20099 0.96406 0.95635 0.92975 1.20879 0.96550 0.92754 1.03071 1.20585 0.92488 0.85630 0.97966 1.42377 1.05502 1.01353 1.88629 1.19289 0.92652 0.83135 1.42025 0.91091 1.24751 0.95344 0.98023 1.02907 1.69673 1.00541 1.30794 1.57235 0.86105 0.77798 0.85015 0.77217 1.20522 1.21825 1.21819 1.21130 0.97361 0.96278 0.98844 1.21019 0.97439 0.96750 0.96451 0.89791 0.87871 0.91169 0.82103 0.83936 0.84331 0.76397 0.90402 0.90408 0.86141 0.85669 0.90763 0.90763 0.96237 0.96241 0.78285 0.93548 0.85665 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 8.88 36.00 0.32 -0.65 16 2 C 0.19 1.78 6.82 -82.17 -0.56 1.22 16 3 N -0.49 -4.48 10.26 -9.15 -0.09 -4.57 16 4 C 0.13 0.81 11.17 -17.47 -0.20 0.62 16 5 C -0.19 -0.97 10.10 -39.50 -0.40 -1.37 16 6 C -0.04 -0.23 9.63 -38.87 -0.37 -0.60 16 7 C -0.19 -1.62 5.89 -104.82 -0.62 -2.24 16 8 C 0.56 5.31 7.71 -12.33 -0.10 5.21 16 9 O -0.53 -6.33 13.37 5.31 0.07 -6.26 16 10 N -0.72 -5.51 5.50 -62.44 -0.34 -5.86 16 11 C 0.17 1.41 5.80 -5.20 -0.03 1.38 16 12 C -0.13 -1.21 5.25 -104.63 -0.55 -1.76 16 13 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 14 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 15 C -0.05 -0.66 5.13 -104.62 -0.54 -1.19 16 16 C -0.09 -1.48 5.46 -27.89 -0.15 -1.63 16 17 C 0.16 3.22 6.24 -4.05 -0.03 3.19 16 18 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 23 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 28 C -0.10 -0.98 9.70 -39.59 -0.38 -1.36 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.00 5.84 -51.93 -0.30 0.70 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.14 0.35 8.06 -52.48 -0.42 -0.08 16 34 H 0.14 0.50 6.57 -52.48 -0.34 0.15 16 35 H 0.40 2.35 6.61 -40.82 -0.27 2.08 16 36 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 41 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 42 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 10.12 7.67 -40.82 -0.31 9.80 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -33.63 397.13 -10.70 -44.33 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.68 Total: 6.93 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -5.00 Total: -11.51 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.05 Total: -56.85 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: 0.07 Total: -6.26 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.63 -10.70 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266085956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.697 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds