Wall clock time and date at job start Tue Mar 31 2020 22:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38168 * 119.55637 * 2 1 4 4 C 1.39800 * 119.00357 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92208 * 180.02562 * 4 3 2 6 6 O 1.21516 * 119.99934 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99803 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99899 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47096 * 179.97438 * 8 7 5 10 10 C 1.38241 * 119.99869 * 269.72087 * 9 8 7 11 11 C 1.38237 * 119.99771 * 179.76707 * 10 9 8 12 12 C 1.38238 * 119.99776 * 0.48394 * 11 10 9 13 13 C 1.50708 * 119.99429 * 179.77079 * 12 11 10 14 14 C 1.53000 * 109.47029 * 270.02047 * 13 12 11 15 15 N 1.46497 * 109.47458 * 180.02562 * 14 13 12 16 16 C 1.36930 * 120.00476 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99842 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00199 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00219 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00046 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47072 * 89.99660 * 20 18 16 22 22 H 1.48502 * 109.47029 * 209.99715 * 20 18 16 23 23 H 1.48500 * 109.46846 * 329.99704 * 20 18 16 24 24 C 1.38229 * 120.00559 * 359.79765 * 12 11 10 25 25 C 1.38235 * 120.00463 * 89.99696 * 9 8 7 26 26 C 1.39830 * 118.15189 * 0.02562 * 4 3 2 27 27 C 1.38123 * 119.00782 * 359.97438 * 26 4 3 28 28 N 1.31800 * 119.54975 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46753 * 269.98217 * 1 2 3 30 30 H 1.09004 * 109.46919 * 29.97616 * 1 2 3 31 31 H 1.08996 * 109.47529 * 149.97929 * 1 2 3 32 32 H 1.08002 * 120.50091 * 0.04279 * 3 2 1 33 33 H 0.96999 * 119.99612 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47151 * 299.99527 * 8 7 5 35 35 H 1.09006 * 109.47571 * 59.99526 * 8 7 5 36 36 H 1.07995 * 120.00188 * 0.02562 * 10 9 8 37 37 H 1.07997 * 119.99936 * 180.25722 * 11 10 9 38 38 H 1.08994 * 109.47378 * 30.02649 * 13 12 11 39 39 H 1.08998 * 109.46639 * 150.02551 * 13 12 11 40 40 H 1.09001 * 109.47617 * 300.01163 * 14 13 12 41 41 H 1.09006 * 109.47081 * 60.00072 * 14 13 12 42 42 H 0.97001 * 119.99701 * 0.02562 * 15 14 13 43 43 H 0.96994 * 120.00387 * 179.97438 * 19 18 16 44 44 H 1.08001 * 120.00431 * 179.97438 * 24 12 11 45 45 H 1.08009 * 119.99572 * 0.02562 * 25 9 8 46 46 H 1.08004 * 120.49788 * 180.02562 * 26 4 3 47 47 H 1.08005 * 119.55485 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3600 2.4519 0.0000 6 8 3.7797 3.5196 0.0005 7 7 5.7073 2.4172 0.0000 8 6 6.4722 3.6666 0.0011 9 6 7.9462 3.3531 0.0015 10 6 8.6231 3.2143 1.1988 11 6 9.9742 2.9220 1.1992 12 6 10.6505 2.7785 0.0022 13 6 12.1246 2.4649 0.0026 14 6 12.9236 3.7698 0.0037 15 7 14.3565 3.4651 0.0035 16 6 15.2729 4.4825 0.0049 17 1 14.9393 5.5097 0.0065 18 6 16.6306 4.1938 0.0053 19 7 17.5115 5.1718 0.0061 20 14 17.2077 2.4171 0.0032 21 1 17.3613 1.9482 -1.3974 22 1 18.5135 2.3200 0.7038 23 1 16.2070 1.5709 0.7016 24 6 9.9751 2.9230 -1.1952 25 6 8.6229 3.2101 -1.1955 26 6 4.2343 -0.0508 -0.0016 27 6 3.4741 -1.2040 -0.0016 28 7 2.1570 -1.1466 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6495 2.1377 0.0007 33 1 6.1705 1.5649 0.0000 34 1 6.2238 4.2455 -0.8884 35 1 6.2237 4.2441 0.8916 36 1 8.0954 3.3301 2.1340 37 1 10.5020 2.8094 2.1346 38 1 12.3728 1.8862 0.8923 39 1 12.3734 1.8873 -0.8876 40 1 12.6754 4.3486 -0.8860 41 1 12.6747 4.3475 0.8939 42 1 14.6562 2.5425 0.0024 43 1 18.4602 4.9700 0.0067 44 1 10.5036 2.8113 -2.1303 45 1 8.0951 3.3234 -2.1310 46 1 5.3129 -0.1054 -0.0017 47 1 3.9653 -2.1659 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267098468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:20 Heat of formation + Delta-G solvation = 29.165419 kcal Electronic energy + Delta-G solvation = -26559.833251 eV Core-core repulsion = 22707.330187 eV Total energy + Delta-G solvation = -3852.503064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17226 -39.96363 -39.24473 -36.06399 -35.04236 -33.82074 -32.96964 -32.69874 -31.15910 -31.06729 -28.99066 -28.18737 -26.35739 -24.52481 -23.37233 -23.17756 -22.86324 -21.50526 -20.89619 -20.64483 -18.55676 -17.64431 -17.32385 -16.39266 -16.12713 -16.04855 -15.95988 -15.41255 -15.39227 -14.98292 -14.80091 -14.52197 -14.28444 -14.05709 -13.81215 -13.70877 -13.51991 -13.04910 -12.97228 -12.83203 -12.78948 -12.76312 -12.46602 -12.23730 -11.57547 -11.38948 -11.36262 -11.01625 -10.77822 -10.72812 -10.72465 -10.43030 -10.19022 -10.02998 -9.62533 -9.58583 -9.54004 -9.05238 -8.91948 -8.71221 -7.27011 -5.79202 -3.15454 0.17114 0.51426 1.04603 1.28611 2.38796 2.64996 3.28324 3.34609 3.37094 3.42791 3.64168 3.71182 4.03120 4.13566 4.35635 4.38239 4.48165 4.56407 4.63181 4.80602 4.83053 4.87843 4.94978 4.99814 5.08299 5.15937 5.28742 5.34895 5.36922 5.41076 5.48151 5.51343 5.52305 5.60529 5.63158 5.71715 5.84503 5.89030 5.95401 6.05839 6.07594 6.28992 6.36912 6.47636 6.66990 6.77471 6.86223 6.94639 7.37753 7.62939 7.96730 8.39497 9.18278 9.90379 10.09973 11.39158 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.001535 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.192825 B =18241.003515 C =18899.797756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.125 3.875 3 C -0.116 4.116 4 C -0.083 4.083 5 C 0.557 3.443 6 O -0.528 6.528 7 N -0.716 5.716 8 C 0.165 3.835 9 C -0.129 4.129 10 C -0.097 4.097 11 C -0.117 4.117 12 C -0.052 4.052 13 C -0.098 4.098 14 C 0.165 3.835 15 N -0.757 5.757 16 C -0.246 4.246 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.117 4.117 25 C -0.097 4.097 26 C -0.150 4.150 27 C 0.103 3.897 28 N -0.471 5.471 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.403 0.597 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.140 0.860 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.596 -12.710 -0.009 35.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.012 4.012 3 C -0.136 4.136 4 C -0.094 4.094 5 C 0.343 3.657 6 O -0.405 6.405 7 N -0.368 5.368 8 C 0.042 3.958 9 C -0.129 4.129 10 C -0.116 4.116 11 C -0.135 4.135 12 C -0.053 4.053 13 C -0.136 4.136 14 C 0.037 3.963 15 N -0.403 5.403 16 C -0.376 4.376 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.716 3.284 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.135 4.135 25 C -0.116 4.116 26 C -0.170 4.170 27 C -0.053 4.053 28 N -0.181 5.181 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.166 0.834 33 H 0.239 0.761 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.157 0.843 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -34.371 -12.425 -0.009 36.547 hybrid contribution 1.548 -0.803 0.022 1.744 sum -32.822 -13.228 0.013 35.388 Atomic orbital electron populations 1.20761 0.88126 1.03897 1.03509 1.21363 0.97464 0.87743 0.94672 1.22142 0.93230 1.00219 0.98036 1.20363 0.94542 0.93448 1.01010 1.18196 0.82184 0.88491 0.76854 1.90801 1.69855 1.30740 1.49118 1.46032 1.05608 1.10415 1.74705 1.20229 0.86596 0.85514 1.03414 1.19686 0.94462 1.04879 0.93870 1.21027 0.94498 0.98834 0.97217 1.21127 0.94099 1.00202 0.98104 1.20033 0.95892 0.96326 0.93023 1.20919 0.89938 0.99675 1.03067 1.20567 0.83723 0.93028 0.98933 1.42716 1.01028 1.05266 1.91298 1.19062 0.86519 0.88866 1.43150 0.89217 1.24681 0.95623 0.96856 1.01968 1.69703 1.00908 1.30062 1.57487 0.86528 0.78045 0.86047 0.77781 1.21046 1.21670 1.20355 1.21124 0.94084 1.00219 0.98098 1.21027 0.94486 0.98848 0.97222 1.22349 1.01601 0.92669 1.00404 1.22770 0.89132 0.98531 0.94909 1.67429 1.10319 1.29516 1.10864 0.90021 0.90305 0.90119 0.83394 0.76141 0.90279 0.90289 0.86061 0.85620 0.90811 0.90802 0.95365 0.95416 0.80670 0.93023 0.85607 0.86058 0.84251 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.17 36.00 0.37 -0.12 16 2 C 0.13 0.92 6.78 -82.63 -0.56 0.36 16 3 C -0.12 -0.90 9.31 -39.02 -0.36 -1.26 16 4 C -0.08 -0.65 5.91 -104.65 -0.62 -1.27 16 5 C 0.56 5.23 7.80 -12.19 -0.10 5.14 16 6 O -0.53 -6.75 16.45 5.35 0.09 -6.66 16 7 N -0.72 -5.34 5.51 -62.33 -0.34 -5.68 16 8 C 0.16 1.36 5.80 -5.20 -0.03 1.33 16 9 C -0.13 -1.15 5.25 -104.62 -0.55 -1.70 16 10 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 11 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 12 C -0.05 -0.64 5.13 -104.62 -0.54 -1.18 16 13 C -0.10 -1.41 5.46 -27.88 -0.15 -1.56 16 14 C 0.16 3.13 6.24 -4.04 -0.03 3.10 16 15 N -0.76 -17.93 5.41 -59.91 -0.32 -18.26 16 16 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 20 Si 0.89 21.90 27.74 -169.99 -4.71 17.19 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 24 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 25 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 26 C -0.15 -0.88 9.62 -39.03 -0.38 -1.26 16 27 C 0.10 0.65 11.17 -17.59 -0.20 0.45 16 28 N -0.47 -3.83 10.25 -9.52 -0.10 -3.93 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.15 1.07 7.74 -52.49 -0.41 0.67 16 33 H 0.40 2.21 6.61 -40.82 -0.27 1.94 16 34 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.36 8.22 5.53 -40.82 -0.23 7.99 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.14 0.46 6.54 -52.48 -0.34 0.12 16 47 H 0.16 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -35.11 399.52 -10.26 -45.37 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.74 Total: 5.61 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -4.93 Total: -11.08 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.01 Total: -56.45 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: 0.09 Total: -6.66 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.11 -10.26 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267098468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.535 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds