Wall clock time and date at job start Tue Mar 31 2020 22:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31888 * 119.61766 * 2 1 4 4 C 1.31850 * 121.72334 * 180.30909 * 3 2 1 5 5 C 1.38231 * 120.76797 * 359.71293 * 4 3 2 6 6 C 1.38624 * 119.15441 * 359.97438 * 5 4 3 7 7 C 1.38177 * 119.61747 * 179.73558 * 2 1 3 8 8 C 1.50700 * 120.41896 * 359.97077 * 7 2 1 9 9 C 1.50702 * 109.46869 * 84.72585 * 8 7 2 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.46716 * 64.99947 * 13 12 11 15 15 N 1.46496 * 109.47141 * 305.00435 * 13 12 11 16 16 C 1.36944 * 120.00042 * 154.99672 * 15 13 12 17 17 H 1.07996 * 119.99561 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99744 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00400 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99736 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47383 * 59.99638 * 20 18 16 22 22 H 1.48504 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47110 * 299.99632 * 20 18 16 24 24 C 1.50699 * 109.47491 * 184.99902 * 13 12 11 25 25 C 1.38234 * 119.99433 * 79.72824 * 24 13 12 26 26 C 1.38237 * 119.99973 * 179.78727 * 25 24 13 27 27 C 1.38244 * 119.99632 * 0.44690 * 26 25 24 28 28 C 1.38228 * 120.00097 * 359.80587 * 27 26 25 29 29 C 1.38228 * 120.00215 * 260.00286 * 24 13 12 30 30 H 1.08996 * 109.47156 * 270.26780 * 1 2 3 31 31 H 1.09004 * 109.46945 * 30.26567 * 1 2 3 32 32 H 1.09000 * 109.47445 * 150.26282 * 1 2 3 33 33 H 1.08003 * 119.62043 * 179.72444 * 4 3 2 34 34 H 1.07991 * 120.42216 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.78865 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47210 * 324.72879 * 8 7 2 37 37 H 1.08994 * 109.47551 * 204.72531 * 8 7 2 38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 39 39 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 40 40 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 41 41 H 0.96998 * 120.00378 * 334.99902 * 15 13 12 42 42 H 0.96998 * 119.99891 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00442 * 0.02562 * 25 24 13 44 44 H 1.07995 * 120.00942 * 180.27250 * 26 25 24 45 45 H 1.08002 * 119.99728 * 179.83819 * 27 26 25 46 46 H 1.08002 * 120.00338 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00605 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1950 -0.0061 5 6 4.2267 0.0341 -0.0067 6 6 3.5766 -1.1902 -0.0004 7 6 2.1899 -1.2012 0.0055 8 6 1.4372 -2.5068 0.0122 9 6 1.0726 -2.8836 -1.4006 10 8 1.3928 -2.1632 -2.3223 11 7 0.3959 -4.0242 -1.6406 12 6 0.0467 -4.3935 -3.0146 13 6 -0.7132 -5.7215 -3.0083 14 1 -1.6653 -5.5928 -2.4934 15 7 0.0835 -6.7367 -2.3151 16 6 -0.5338 -7.8113 -1.7323 17 1 -1.6081 -7.9099 -1.7834 18 6 0.2211 -8.7729 -1.0749 19 7 1.5302 -8.6524 -1.0122 20 14 -0.6210 -10.2390 -0.2806 21 1 -1.3581 -11.0073 -1.3158 22 1 0.3995 -11.1135 0.3513 23 1 -1.5737 -9.7620 0.7539 24 6 -0.9650 -6.1629 -4.4270 25 6 0.0419 -6.7760 -5.1490 26 6 -0.1903 -7.1849 -6.4490 27 6 -1.4266 -6.9724 -7.0300 28 6 -2.4318 -6.3547 -6.3097 29 6 -2.2009 -5.9497 -5.0082 30 1 -0.3633 0.0048 1.0276 31 1 -0.3633 0.8876 -0.5180 32 1 -0.3634 -0.8923 -0.5097 33 1 3.9753 2.1529 -0.0104 34 1 5.3056 0.0803 -0.0121 35 1 4.1367 -2.1137 -0.0011 36 1 0.5291 -2.3996 0.6056 37 1 2.0645 -3.2857 0.4456 38 1 0.1400 -4.6006 -0.9035 39 1 -0.5822 -3.6175 -3.4507 40 1 0.9568 -4.4981 -3.6052 41 1 1.0483 -6.6479 -2.2688 42 1 2.0577 -9.3246 -0.5532 43 1 1.0087 -6.9390 -4.6963 44 1 0.5948 -7.6679 -7.0117 45 1 -1.6072 -7.2895 -8.0464 46 1 -3.3978 -6.1890 -6.7634 47 1 -2.9863 -5.4671 -4.4455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267522573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:55 Heat of formation + Delta-G solvation = 28.811430 kcal Electronic energy + Delta-G solvation = -28417.230200 eV Core-core repulsion = 24564.711786 eV Total energy + Delta-G solvation = -3852.518414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59446 -39.32218 -38.69973 -35.95864 -33.78650 -33.60477 -33.01212 -32.03963 -30.43838 -29.61176 -29.13700 -27.70697 -26.71121 -23.88957 -23.06085 -22.53871 -22.00205 -21.78539 -20.17090 -19.85062 -17.50117 -16.98312 -16.83359 -16.47182 -16.28385 -15.83087 -15.27848 -14.91883 -14.69343 -14.50998 -14.41750 -14.18595 -13.58467 -13.47215 -13.20312 -13.11680 -12.99283 -12.89543 -12.78742 -12.50515 -12.49412 -12.25683 -12.13240 -11.91252 -11.41742 -11.15376 -10.98415 -10.87778 -10.74050 -10.49462 -10.21663 -9.92158 -9.84154 -9.59698 -9.48071 -9.12173 -8.80420 -8.71175 -8.43221 -8.21505 -7.18339 -5.91580 -3.23018 1.05239 1.26559 1.83804 1.90246 2.86862 3.34838 3.40839 3.41404 3.44295 3.83518 4.26288 4.28373 4.46543 4.55880 4.74426 4.85438 4.95092 5.10479 5.21208 5.28843 5.32210 5.39012 5.41086 5.43796 5.49784 5.52645 5.53432 5.57649 5.58215 5.67187 5.75764 5.83821 5.99538 6.01145 6.06678 6.12088 6.22361 6.23709 6.38673 6.46188 6.60115 6.67606 6.76570 6.91194 6.99508 7.25304 7.50305 7.58847 7.85293 7.96161 8.24649 8.50200 9.37803 9.87368 10.24099 11.29675 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.003042 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.262278 B = 9202.651165 C =11049.148229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.143 3.857 3 N -0.487 5.487 4 C 0.097 3.903 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.109 4.109 8 C -0.103 4.103 9 C 0.513 3.487 10 O -0.545 6.545 11 N -0.712 5.712 12 C 0.122 3.878 13 C 0.198 3.802 14 H 0.065 0.935 15 N -0.714 5.714 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.929 5.929 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.081 4.081 25 C -0.084 4.084 26 C -0.128 4.128 27 C -0.134 4.134 28 C -0.130 4.130 29 C -0.120 4.120 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.411 0.589 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 13.175 -0.257 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 N -0.197 5.197 4 C -0.060 4.060 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.112 4.112 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.423 6.423 11 N -0.365 5.365 12 C -0.003 4.003 13 C 0.087 3.913 14 H 0.083 0.917 15 N -0.354 5.354 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.085 4.085 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.139 4.139 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.170 0.830 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.140 0.860 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.983 14.315 -0.809 14.371 hybrid contribution 0.405 -2.243 0.608 2.359 sum -0.578 12.072 -0.201 12.087 Atomic orbital electron populations 1.20745 0.89119 1.03754 1.02703 1.21046 0.96822 0.87722 0.93882 1.67497 1.10074 1.29127 1.12976 1.22669 0.89523 0.98332 0.95523 1.22056 1.01326 0.93394 1.03185 1.21489 0.93683 0.98679 0.94813 1.20119 0.94218 0.94980 1.01858 1.20650 1.02201 0.95636 0.95836 1.20342 0.78029 0.81149 0.90669 1.90708 1.53925 1.51763 1.45888 1.45963 1.57095 1.23113 1.10295 1.21567 0.99768 0.96167 0.82785 1.19481 0.95422 0.87700 0.88679 0.91665 1.42447 1.06154 1.23769 1.63078 1.19143 0.91788 0.99477 1.27152 0.91141 1.24708 0.95401 0.98863 1.01134 1.69640 1.03843 1.36445 1.47671 0.86305 0.78193 0.82711 0.79163 1.21256 1.21706 1.21160 1.20972 0.93220 0.97225 0.97109 1.21000 0.99734 0.96334 0.93135 1.21110 0.97014 1.00656 0.95796 1.20985 0.93945 1.00848 0.99470 1.20988 0.98631 1.00197 0.94983 1.21011 0.96940 1.00871 0.95104 0.90388 0.90422 0.90733 0.82988 0.84917 0.84799 0.87598 0.87432 0.75210 0.91579 0.91682 0.77870 0.93326 0.85960 0.86860 0.87078 0.86979 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.39 36.01 0.34 -0.83 16 2 C 0.14 1.91 6.78 -82.59 -0.56 1.35 16 3 N -0.49 -6.68 10.27 -9.47 -0.10 -6.78 16 4 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 5 C -0.18 -1.93 10.11 -39.44 -0.40 -2.33 16 6 C -0.06 -0.73 9.84 -39.28 -0.39 -1.11 16 7 C -0.11 -1.41 4.39 -104.48 -0.46 -1.87 16 8 C -0.10 -1.21 5.16 -29.03 -0.15 -1.36 16 9 C 0.51 7.72 7.03 -10.98 -0.08 7.64 16 10 O -0.54 -10.14 16.03 5.55 0.09 -10.06 16 11 N -0.71 -10.70 5.39 -60.29 -0.32 -11.03 16 12 C 0.12 1.97 5.21 -4.04 -0.02 1.94 16 13 C 0.20 3.50 2.64 -69.09 -0.18 3.32 16 14 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 15 N -0.71 -15.43 3.81 -54.55 -0.21 -15.64 16 16 C -0.24 -6.08 9.92 -15.06 -0.15 -6.23 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 19 N -0.93 -25.68 13.06 55.49 0.72 -24.95 16 20 Si 0.91 21.08 29.55 -169.99 -5.02 16.05 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.08 -1.43 4.92 -104.63 -0.51 -1.95 16 25 C -0.08 -1.52 9.32 -39.58 -0.37 -1.89 16 26 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 29 C -0.12 -1.89 9.67 -39.58 -0.38 -2.28 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.83 6.14 -51.93 -0.32 0.51 16 33 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 36 H 0.11 1.00 7.02 -51.93 -0.36 0.64 16 37 H 0.11 1.13 8.06 -51.93 -0.42 0.71 16 38 H 0.41 6.10 8.14 -40.82 -0.33 5.76 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.39 9.06 7.80 -40.82 -0.32 8.74 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.12 2.37 7.73 -52.49 -0.41 1.96 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 47 H 0.11 1.57 8.04 -52.49 -0.42 1.15 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -31.25 398.57 -10.40 -41.65 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -6.77 Total: 16.73 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -4.80 Total: -11.99 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.09 Total: -58.40 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.25 -10.40 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267522573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.462 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds