Wall clock time and date at job start Tue Mar 31 2020 22:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31888 * 119.61766 * 2 1 4 4 C 1.31850 * 121.72334 * 180.30909 * 3 2 1 5 5 C 1.38231 * 120.76797 * 359.71293 * 4 3 2 6 6 C 1.38624 * 119.15441 * 359.97438 * 5 4 3 7 7 C 1.38177 * 119.61747 * 179.73558 * 2 1 3 8 8 C 1.50700 * 120.41896 * 359.97077 * 7 2 1 9 9 C 1.50702 * 109.46869 * 84.72585 * 8 7 2 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.46716 * 64.99947 * 13 12 11 15 15 N 1.46496 * 109.47141 * 305.00435 * 13 12 11 16 16 C 1.36944 * 120.00042 * 154.99672 * 15 13 12 17 17 H 1.07996 * 119.99561 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99744 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00400 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99736 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47383 * 59.99638 * 20 18 16 22 22 H 1.48504 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47110 * 299.99632 * 20 18 16 24 24 C 1.50699 * 109.47491 * 184.99902 * 13 12 11 25 25 C 1.38234 * 119.99433 * 79.72824 * 24 13 12 26 26 C 1.38237 * 119.99973 * 179.78727 * 25 24 13 27 27 C 1.38244 * 119.99632 * 0.44690 * 26 25 24 28 28 C 1.38228 * 120.00097 * 359.80587 * 27 26 25 29 29 C 1.38228 * 120.00215 * 260.00286 * 24 13 12 30 30 H 1.08996 * 109.47156 * 270.26780 * 1 2 3 31 31 H 1.09004 * 109.46945 * 30.26567 * 1 2 3 32 32 H 1.09000 * 109.47445 * 150.26282 * 1 2 3 33 33 H 1.08003 * 119.62043 * 179.72444 * 4 3 2 34 34 H 1.07991 * 120.42216 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.78865 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47210 * 324.72879 * 8 7 2 37 37 H 1.08994 * 109.47551 * 204.72531 * 8 7 2 38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 39 39 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 40 40 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 41 41 H 0.96998 * 120.00378 * 334.99902 * 15 13 12 42 42 H 0.96998 * 119.99891 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00442 * 0.02562 * 25 24 13 44 44 H 1.07995 * 120.00942 * 180.27250 * 26 25 24 45 45 H 1.08002 * 119.99728 * 179.83819 * 27 26 25 46 46 H 1.08002 * 120.00338 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00605 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1950 -0.0061 5 6 4.2267 0.0341 -0.0067 6 6 3.5766 -1.1902 -0.0004 7 6 2.1899 -1.2012 0.0055 8 6 1.4372 -2.5068 0.0122 9 6 1.0726 -2.8836 -1.4006 10 8 1.3928 -2.1632 -2.3223 11 7 0.3959 -4.0242 -1.6406 12 6 0.0467 -4.3935 -3.0146 13 6 -0.7132 -5.7215 -3.0083 14 1 -1.6653 -5.5928 -2.4934 15 7 0.0835 -6.7367 -2.3151 16 6 -0.5338 -7.8113 -1.7323 17 1 -1.6081 -7.9099 -1.7834 18 6 0.2211 -8.7729 -1.0749 19 7 1.5302 -8.6524 -1.0122 20 14 -0.6210 -10.2390 -0.2806 21 1 -1.3581 -11.0073 -1.3158 22 1 0.3995 -11.1135 0.3513 23 1 -1.5737 -9.7620 0.7539 24 6 -0.9650 -6.1629 -4.4270 25 6 0.0419 -6.7760 -5.1490 26 6 -0.1903 -7.1849 -6.4490 27 6 -1.4266 -6.9724 -7.0300 28 6 -2.4318 -6.3547 -6.3097 29 6 -2.2009 -5.9497 -5.0082 30 1 -0.3633 0.0048 1.0276 31 1 -0.3633 0.8876 -0.5180 32 1 -0.3634 -0.8923 -0.5097 33 1 3.9753 2.1529 -0.0104 34 1 5.3056 0.0803 -0.0121 35 1 4.1367 -2.1137 -0.0011 36 1 0.5291 -2.3996 0.6056 37 1 2.0645 -3.2857 0.4456 38 1 0.1400 -4.6006 -0.9035 39 1 -0.5822 -3.6175 -3.4507 40 1 0.9568 -4.4981 -3.6052 41 1 1.0483 -6.6479 -2.2688 42 1 2.0577 -9.3246 -0.5532 43 1 1.0087 -6.9390 -4.6963 44 1 0.5948 -7.6679 -7.0117 45 1 -1.6072 -7.2895 -8.0464 46 1 -3.3978 -6.1890 -6.7634 47 1 -2.9863 -5.4671 -4.4455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267522573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:54 Heat of formation + Delta-G solvation = 10.772296 kcal Electronic energy + Delta-G solvation = -28418.012435 eV Core-core repulsion = 24564.711786 eV Total energy + Delta-G solvation = -3853.300650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57202 -40.54819 -39.93198 -37.39749 -35.18301 -34.75767 -33.88972 -33.61590 -31.69913 -31.17595 -30.21415 -28.80222 -27.82884 -25.61710 -24.34731 -23.57774 -23.21352 -22.76888 -21.48536 -21.10044 -19.29921 -18.15369 -17.83058 -17.61141 -17.36875 -17.00914 -16.76036 -16.21811 -15.90830 -15.73704 -15.52894 -15.50082 -15.13014 -14.78419 -14.40440 -14.17836 -14.09272 -14.06622 -13.98961 -13.81416 -13.42937 -13.33109 -13.22575 -13.03821 -12.85411 -12.74743 -12.43313 -12.29873 -12.17445 -12.00847 -11.82986 -11.62148 -11.11026 -10.94930 -10.61349 -10.40268 -10.02314 -9.71253 -9.67766 -9.51563 -9.01699 -7.90571 -5.19677 0.15445 0.35711 0.59133 0.64817 1.50499 1.52359 1.57174 1.66635 2.28830 2.57978 2.88091 3.02809 3.42102 3.43915 3.64243 3.80386 3.88128 3.98824 4.01940 4.07870 4.11979 4.17011 4.23517 4.36390 4.38439 4.42001 4.48426 4.56314 4.64824 4.69522 4.71940 4.73609 4.79892 4.80343 4.87263 5.04828 5.15318 5.23326 5.25220 5.30874 5.33352 5.48826 5.57293 5.69668 5.73436 5.81807 5.94169 6.26022 6.29790 6.62216 7.05759 7.28210 7.38079 8.05404 8.32395 9.31131 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.003042 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.262278 B = 9202.651165 C =11049.148229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 N -0.513 5.513 4 C 0.087 3.913 5 C -0.178 4.178 6 C -0.076 4.076 7 C -0.126 4.126 8 C -0.095 4.095 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.134 3.866 13 C 0.205 3.795 14 H 0.073 0.927 15 N -0.717 5.717 16 C -0.231 4.231 17 H 0.073 0.927 18 C -0.060 4.060 19 N -0.962 5.962 20 Si 0.960 3.040 21 H -0.289 1.289 22 H -0.301 1.301 23 H -0.275 1.275 24 C -0.101 4.101 25 C -0.111 4.111 26 C -0.138 4.138 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.127 4.127 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.414 0.586 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 13.639 -0.616 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.015 4.015 3 N -0.223 5.223 4 C -0.070 4.070 5 C -0.198 4.198 6 C -0.102 4.102 7 C -0.129 4.129 8 C -0.135 4.135 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.361 5.361 12 C 0.009 3.991 13 C 0.095 3.905 14 H 0.091 0.909 15 N -0.357 5.357 16 C -0.363 4.363 17 H 0.091 0.909 18 C -0.253 4.253 19 N -0.612 5.612 20 Si 0.790 3.210 21 H -0.216 1.216 22 H -0.227 1.227 23 H -0.201 1.201 24 C -0.105 4.105 25 C -0.129 4.129 26 C -0.156 4.156 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.145 4.145 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.198 0.802 34 H 0.180 0.820 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.251 0.749 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.208 0.792 42 H 0.058 0.942 43 H 0.114 0.886 44 H 0.145 0.855 45 H 0.161 0.839 46 H 0.164 0.836 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.552 14.795 -1.173 15.059 hybrid contribution 0.864 -2.301 0.592 2.528 sum -1.688 12.494 -0.581 12.621 Atomic orbital electron populations 1.20763 0.88112 1.03291 1.03884 1.21392 0.97844 0.87953 0.94283 1.67524 1.11293 1.29511 1.13952 1.23228 0.89131 0.99949 0.94687 1.22403 1.02859 0.92659 1.01854 1.21821 0.93760 0.99849 0.94796 1.20276 0.94834 0.95155 1.02608 1.20656 1.03495 0.95644 0.93658 1.20887 0.76913 0.80311 0.91706 1.90687 1.55352 1.52838 1.47421 1.45942 1.57071 1.23238 1.09819 1.21363 0.98757 0.95663 0.83335 1.19541 0.95082 0.87107 0.88734 0.90930 1.42463 1.05766 1.23986 1.63451 1.19415 0.91894 0.99604 1.25360 0.90861 1.25310 0.95876 1.01315 1.02819 1.69779 1.04960 1.37081 1.49363 0.85423 0.77093 0.80063 0.78373 1.21556 1.22747 1.20063 1.20903 0.94255 0.98399 0.96906 1.20952 0.99058 0.98370 0.94554 1.21348 0.98473 1.00658 0.95117 1.21387 0.93019 0.99731 1.00859 1.21421 1.00001 0.98688 0.94347 1.21293 0.96409 1.00771 0.96067 0.88343 0.90851 0.91119 0.80238 0.81991 0.83705 0.85151 0.86148 0.74919 0.90652 0.93717 0.79199 0.94218 0.88634 0.85525 0.83900 0.83576 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.23 9.39 71.24 0.67 -1.56 16 2 C 0.12 3.22 6.78 42.54 0.29 3.51 16 3 N -0.51 -13.81 10.27 -183.88 -1.89 -15.70 16 4 C 0.09 1.89 11.18 84.69 0.95 2.83 16 5 C -0.18 -3.58 10.11 22.36 0.23 -3.35 16 6 C -0.08 -1.78 9.84 22.47 0.22 -1.55 16 7 C -0.13 -3.20 4.39 -19.78 -0.09 -3.28 16 8 C -0.09 -2.15 5.16 29.10 0.15 -2.00 16 9 C 0.51 15.50 7.03 87.66 0.62 16.12 16 10 O -0.58 -22.02 16.03 -3.04 -0.05 -22.07 16 11 N -0.71 -21.37 5.39 -463.06 -2.49 -23.86 16 12 C 0.13 4.38 5.21 86.38 0.45 4.83 16 13 C 0.20 7.23 2.64 44.24 0.12 7.35 16 14 H 0.07 2.46 7.94 -2.39 -0.02 2.44 16 15 N -0.72 -31.52 3.81 -326.51 -1.24 -32.76 16 16 C -0.23 -11.48 9.92 84.03 0.83 -10.65 16 17 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 18 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 19 N -0.96 -54.37 13.06 21.65 0.28 -54.08 16 20 Si 0.96 43.49 29.55 68.60 2.03 45.52 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C -0.10 -3.53 4.92 -19.87 -0.10 -3.63 16 25 C -0.11 -4.09 9.32 22.27 0.21 -3.88 16 26 C -0.14 -4.32 10.05 22.27 0.22 -4.10 16 27 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 28 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 29 C -0.13 -3.72 9.67 22.27 0.22 -3.50 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.54 6.14 -2.39 -0.01 1.53 16 33 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.16 2.16 8.06 -2.92 -0.02 2.14 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.13 2.28 7.02 -2.38 -0.02 2.26 16 37 H 0.12 2.43 8.06 -2.39 -0.02 2.41 16 38 H 0.41 12.19 8.14 -92.71 -0.75 11.43 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.38 18.21 7.80 -92.71 -0.72 17.49 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.10 3.95 7.73 -2.91 -0.02 3.93 16 44 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 45 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 46 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.14 3.32 8.04 -2.91 -0.02 3.29 16 Total: -1.00 -68.34 398.57 2.04 -66.29 By element: Atomic # 1 Polarization: 49.04 SS G_CDS: -0.48 Total: 48.55 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.89 Total: -11.89 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -5.35 Total: -126.41 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.34 2.04 -66.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267522573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.066 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds