Wall clock time and date at job start Tue Mar 31 2020 22:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31894 * 119.61711 * 2 1 4 4 C 1.31850 * 121.72218 * 180.31312 * 3 2 1 5 5 C 1.38220 * 120.76797 * 359.70367 * 4 3 2 6 6 C 1.38631 * 119.16051 * 0.02562 * 5 4 3 7 7 C 1.38180 * 119.61792 * 179.73837 * 2 1 3 8 8 C 1.50702 * 120.41979 * 359.96924 * 7 2 1 9 9 C 1.50697 * 109.46686 * 84.72833 * 8 7 2 10 10 O 1.21282 * 120.00305 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99731 * 179.97438 * 9 8 7 12 12 C 1.46507 * 120.00195 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47463 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.46973 * 295.00118 * 13 12 11 15 15 N 1.46493 * 109.47354 * 54.99785 * 13 12 11 16 16 C 1.36942 * 119.99673 * 56.89100 * 15 13 12 17 17 H 1.08000 * 120.00125 * 354.76201 * 16 15 13 18 18 C 1.38821 * 119.99621 * 174.76496 * 16 15 13 19 19 N 1.31618 * 120.00258 * 359.72323 * 18 16 15 20 20 Si 1.86801 * 119.99717 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46937 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46828 * 119.99844 * 20 18 16 23 23 H 1.48489 * 109.47185 * 240.00063 * 20 18 16 24 24 C 1.50701 * 109.47299 * 175.00282 * 13 12 11 25 25 C 1.38230 * 119.99770 * 206.25076 * 24 13 12 26 26 C 1.38238 * 119.99662 * 179.80393 * 25 24 13 27 27 C 1.38230 * 119.99974 * 0.40562 * 26 25 24 28 28 C 1.38227 * 120.00130 * 359.85090 * 27 26 25 29 29 C 1.38229 * 120.00060 * 26.52487 * 24 13 12 30 30 H 1.08999 * 109.47107 * 270.26283 * 1 2 3 31 31 H 1.08996 * 109.47408 * 30.26749 * 1 2 3 32 32 H 1.09005 * 109.46904 * 150.26483 * 1 2 3 33 33 H 1.08004 * 119.61491 * 179.73277 * 4 3 2 34 34 H 1.08000 * 120.42033 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.78752 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46791 * 324.73063 * 8 7 2 37 37 H 1.08997 * 109.47004 * 204.72612 * 8 7 2 38 38 H 0.96991 * 120.00454 * 0.02562 * 11 9 8 39 39 H 1.09006 * 109.46839 * 59.99718 * 12 11 9 40 40 H 1.09004 * 109.46873 * 300.00768 * 12 11 9 41 41 H 0.97000 * 120.00371 * 236.89333 * 15 13 12 42 42 H 0.96991 * 120.00081 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.00160 * 0.02562 * 25 24 13 44 44 H 1.08000 * 119.99773 * 180.22800 * 26 25 24 45 45 H 1.08008 * 120.00043 * 179.83038 * 27 26 25 46 46 H 1.08006 * 120.00021 * 179.97438 * 28 27 26 47 47 H 1.08005 * 119.99859 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 -0.0061 5 6 4.2267 0.0342 -0.0067 6 6 3.5766 -1.1902 -0.0012 7 6 2.1899 -1.2012 0.0055 8 6 1.4373 -2.5068 0.0121 9 6 1.0727 -2.8836 -1.4007 10 8 1.3929 -2.1631 -2.3223 11 7 0.3916 -4.0217 -1.6402 12 6 0.0367 -4.3877 -3.0137 13 6 -0.7273 -5.7133 -3.0070 14 1 -0.0703 -6.5095 -2.6570 15 7 -1.8834 -5.6061 -2.1137 16 6 -2.8184 -4.6267 -2.3185 17 1 -2.6614 -3.8819 -3.0847 18 6 -3.9680 -4.5912 -1.5411 19 7 -4.1619 -5.5020 -0.6110 20 14 -5.2430 -3.2548 -1.8199 21 1 -4.7941 -2.3642 -2.9202 22 1 -6.5406 -3.8774 -2.1859 23 1 -5.4082 -2.4610 -0.5760 24 6 -1.1988 -6.0284 -4.4032 25 6 -2.3162 -6.8196 -4.5933 26 6 -2.7510 -7.1053 -5.8740 27 6 -2.0635 -6.6068 -6.9647 28 6 -0.9430 -5.8200 -6.7746 29 6 -0.5105 -5.5310 -5.4939 30 1 -0.3633 0.0047 1.0276 31 1 -0.3634 0.8875 -0.5180 32 1 -0.3633 -0.8924 -0.5097 33 1 3.9753 2.1530 -0.0103 34 1 5.3057 0.0804 -0.0121 35 1 4.1368 -2.1136 -0.0019 36 1 0.5292 -2.3996 0.6055 37 1 2.0647 -3.2857 0.4455 38 1 0.1358 -4.5981 -0.9033 39 1 0.9446 -4.4942 -3.6075 40 1 -0.5913 -3.6089 -3.4465 41 1 -1.9867 -6.2288 -1.3772 42 1 -4.9653 -5.4774 -0.0681 43 1 -2.8517 -7.2115 -3.7411 44 1 -3.6263 -7.7204 -6.0225 45 1 -2.4016 -6.8323 -7.9653 46 1 -0.4056 -5.4308 -7.6268 47 1 0.3649 -4.9161 -5.3454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267522575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:59 Heat of formation + Delta-G solvation = 33.578281 kcal Electronic energy + Delta-G solvation = -28887.608657 eV Core-core repulsion = 25035.296949 eV Total energy + Delta-G solvation = -3852.311708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52973 -39.29836 -38.63530 -35.94382 -33.71064 -33.47987 -32.95003 -31.98151 -30.45869 -29.54731 -28.98741 -27.52918 -26.54837 -24.40465 -22.93333 -22.37729 -21.93676 -21.55363 -20.04608 -19.72792 -17.49240 -16.95600 -16.78364 -16.44434 -16.28123 -15.60527 -15.26795 -14.75679 -14.57936 -14.44774 -14.35337 -14.09937 -13.86335 -13.28430 -13.14728 -13.07239 -13.00110 -12.81270 -12.58524 -12.47161 -12.36026 -12.09294 -12.03089 -11.78177 -11.35601 -11.27222 -10.96342 -10.82856 -10.60214 -10.42950 -10.05685 -9.85951 -9.77614 -9.50967 -9.41020 -9.09282 -8.73831 -8.52041 -8.36992 -8.13444 -7.17073 -5.89887 -3.21360 1.10582 1.30057 1.88558 1.97274 2.99021 3.36594 3.45280 3.47252 3.54540 3.91300 4.32783 4.33728 4.51458 4.62085 4.76187 4.91555 4.98035 5.16982 5.28551 5.33098 5.35740 5.43111 5.44258 5.46718 5.59708 5.63229 5.64399 5.65675 5.72547 5.77758 5.80266 5.92930 6.00439 6.14775 6.18016 6.19321 6.26353 6.30365 6.51733 6.60554 6.63064 6.73417 6.87718 6.99856 7.08035 7.29948 7.57019 7.67460 7.97751 8.03070 8.26542 8.63317 9.40437 9.87323 10.24586 11.31437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.003397 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.245128 B = 8240.842305 C = 9869.257490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.148 3.852 3 N -0.487 5.487 4 C 0.097 3.903 5 C -0.183 4.183 6 C -0.063 4.063 7 C -0.109 4.109 8 C -0.102 4.102 9 C 0.512 3.488 10 O -0.548 6.548 11 N -0.702 5.702 12 C 0.115 3.885 13 C 0.197 3.803 14 H 0.073 0.927 15 N -0.714 5.714 16 C -0.231 4.231 17 H 0.070 0.930 18 C -0.004 4.004 19 N -0.930 5.930 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.078 4.078 25 C -0.074 4.074 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.132 4.132 29 C -0.127 4.127 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.404 0.596 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.651 1.617 -0.069 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.011 3.989 3 N -0.196 5.196 4 C -0.061 4.061 5 C -0.203 4.203 6 C -0.089 4.089 7 C -0.112 4.112 8 C -0.143 4.143 9 C 0.297 3.703 10 O -0.426 6.426 11 N -0.352 5.352 12 C -0.010 4.010 13 C 0.086 3.914 14 H 0.091 0.909 15 N -0.354 5.354 16 C -0.362 4.362 17 H 0.088 0.912 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.081 4.081 25 C -0.092 4.092 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.150 4.150 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.239 0.761 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.221 0.779 42 H 0.065 0.935 43 H 0.149 0.851 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.254 3.032 -0.768 13.618 hybrid contribution -0.553 -0.461 0.286 0.775 sum 12.701 2.571 -0.483 12.968 Atomic orbital electron populations 1.20797 0.88766 1.04236 1.02919 1.21120 0.96973 0.87652 0.93170 1.67525 1.10005 1.29220 1.12859 1.22672 0.89579 0.98302 0.95502 1.22021 1.01167 0.93452 1.03631 1.21411 0.93588 0.98459 0.95408 1.20129 0.94121 0.95114 1.01813 1.20647 1.02181 0.95274 0.96191 1.20265 0.78394 0.81160 0.90473 1.90697 1.54814 1.51187 1.45879 1.45728 1.55698 1.23489 1.10276 1.21822 0.97994 0.99003 0.82223 1.19355 0.89915 0.94046 0.88128 0.90946 1.42405 1.23066 1.37634 1.32251 1.19098 0.97471 1.04469 1.15150 0.91231 1.24666 0.97982 0.98523 0.98826 1.69645 1.28190 1.35734 1.24190 0.86261 0.81970 0.81460 0.77456 1.20508 1.21852 1.21823 1.20675 0.95483 0.96023 0.95913 1.21080 0.95113 0.96234 0.96788 1.21124 0.99765 1.00924 0.93044 1.20987 0.96553 0.99480 0.98227 1.20972 0.97512 0.99769 0.96774 1.21123 1.00411 1.00550 0.92475 0.90270 0.90377 0.90238 0.83051 0.85048 0.85083 0.87295 0.88081 0.76091 0.92661 0.91293 0.77884 0.93527 0.85120 0.86917 0.87203 0.87087 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.39 36.01 0.34 -1.21 16 2 C 0.15 2.21 6.78 -82.59 -0.56 1.65 16 3 N -0.49 -7.26 10.27 -9.47 -0.10 -7.35 16 4 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 5 C -0.18 -1.97 10.11 -39.44 -0.40 -2.37 16 6 C -0.06 -0.74 9.84 -39.28 -0.39 -1.12 16 7 C -0.11 -1.48 4.39 -104.48 -0.46 -1.94 16 8 C -0.10 -1.26 5.16 -29.04 -0.15 -1.41 16 9 C 0.51 8.16 7.03 -10.99 -0.08 8.09 16 10 O -0.55 -10.79 16.03 5.56 0.09 -10.70 16 11 N -0.70 -10.98 5.39 -60.29 -0.32 -11.30 16 12 C 0.12 1.96 3.89 -4.04 -0.02 1.95 16 13 C 0.20 3.38 3.26 -69.09 -0.22 3.15 16 14 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 15 N -0.71 -14.79 3.84 -54.55 -0.21 -15.00 16 16 C -0.23 -5.63 8.56 -15.05 -0.13 -5.76 16 17 H 0.07 1.80 6.98 -52.49 -0.37 1.43 16 18 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 19 N -0.93 -25.29 13.06 55.49 0.73 -24.56 16 20 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 C -0.08 -1.37 5.16 -104.63 -0.54 -1.91 16 25 C -0.07 -1.35 8.97 -39.58 -0.35 -1.71 16 26 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 27 C -0.13 -2.01 10.05 -39.59 -0.40 -2.41 16 28 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 29 C -0.13 -2.05 9.14 -39.59 -0.36 -2.41 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.21 6.14 -51.93 -0.32 0.89 16 33 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.11 1.26 7.02 -51.93 -0.36 0.89 16 37 H 0.10 0.94 8.06 -51.93 -0.42 0.52 16 38 H 0.40 5.86 8.14 -40.82 -0.33 5.53 16 39 H 0.06 0.88 6.86 -51.93 -0.36 0.53 16 40 H 0.07 1.40 7.20 -51.93 -0.37 1.03 16 41 H 0.39 8.50 8.04 -40.82 -0.33 8.17 16 42 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.13 2.62 7.52 -52.48 -0.39 2.22 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 46 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 47 H 0.12 1.73 6.21 -52.48 -0.33 1.40 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -31.02 391.24 -10.27 -41.29 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -6.52 Total: 16.73 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -4.80 Total: -11.54 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.09 Total: -58.22 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.02 -10.27 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267522575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.873 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds