Wall clock time and date at job start Tue Mar 31 2020 22:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31894 * 119.61711 * 2 1 4 4 C 1.31850 * 121.72218 * 180.31312 * 3 2 1 5 5 C 1.38220 * 120.76797 * 359.70367 * 4 3 2 6 6 C 1.38631 * 119.16051 * 0.02562 * 5 4 3 7 7 C 1.38180 * 119.61792 * 179.73837 * 2 1 3 8 8 C 1.50702 * 120.41979 * 359.96924 * 7 2 1 9 9 C 1.50697 * 109.46686 * 84.72833 * 8 7 2 10 10 O 1.21282 * 120.00305 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99731 * 179.97438 * 9 8 7 12 12 C 1.46507 * 120.00195 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47463 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.46973 * 295.00118 * 13 12 11 15 15 N 1.46493 * 109.47354 * 54.99785 * 13 12 11 16 16 C 1.36942 * 119.99673 * 56.89100 * 15 13 12 17 17 H 1.08000 * 120.00125 * 354.76201 * 16 15 13 18 18 C 1.38821 * 119.99621 * 174.76496 * 16 15 13 19 19 N 1.31618 * 120.00258 * 359.72323 * 18 16 15 20 20 Si 1.86801 * 119.99717 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46937 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46828 * 119.99844 * 20 18 16 23 23 H 1.48489 * 109.47185 * 240.00063 * 20 18 16 24 24 C 1.50701 * 109.47299 * 175.00282 * 13 12 11 25 25 C 1.38230 * 119.99770 * 206.25076 * 24 13 12 26 26 C 1.38238 * 119.99662 * 179.80393 * 25 24 13 27 27 C 1.38230 * 119.99974 * 0.40562 * 26 25 24 28 28 C 1.38227 * 120.00130 * 359.85090 * 27 26 25 29 29 C 1.38229 * 120.00060 * 26.52487 * 24 13 12 30 30 H 1.08999 * 109.47107 * 270.26283 * 1 2 3 31 31 H 1.08996 * 109.47408 * 30.26749 * 1 2 3 32 32 H 1.09005 * 109.46904 * 150.26483 * 1 2 3 33 33 H 1.08004 * 119.61491 * 179.73277 * 4 3 2 34 34 H 1.08000 * 120.42033 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.78752 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46791 * 324.73063 * 8 7 2 37 37 H 1.08997 * 109.47004 * 204.72612 * 8 7 2 38 38 H 0.96991 * 120.00454 * 0.02562 * 11 9 8 39 39 H 1.09006 * 109.46839 * 59.99718 * 12 11 9 40 40 H 1.09004 * 109.46873 * 300.00768 * 12 11 9 41 41 H 0.97000 * 120.00371 * 236.89333 * 15 13 12 42 42 H 0.96991 * 120.00081 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.00160 * 0.02562 * 25 24 13 44 44 H 1.08000 * 119.99773 * 180.22800 * 26 25 24 45 45 H 1.08008 * 120.00043 * 179.83038 * 27 26 25 46 46 H 1.08006 * 120.00021 * 179.97438 * 28 27 26 47 47 H 1.08005 * 119.99859 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 -0.0061 5 6 4.2267 0.0342 -0.0067 6 6 3.5766 -1.1902 -0.0012 7 6 2.1899 -1.2012 0.0055 8 6 1.4373 -2.5068 0.0121 9 6 1.0727 -2.8836 -1.4007 10 8 1.3929 -2.1631 -2.3223 11 7 0.3916 -4.0217 -1.6402 12 6 0.0367 -4.3877 -3.0137 13 6 -0.7273 -5.7133 -3.0070 14 1 -0.0703 -6.5095 -2.6570 15 7 -1.8834 -5.6061 -2.1137 16 6 -2.8184 -4.6267 -2.3185 17 1 -2.6614 -3.8819 -3.0847 18 6 -3.9680 -4.5912 -1.5411 19 7 -4.1619 -5.5020 -0.6110 20 14 -5.2430 -3.2548 -1.8199 21 1 -4.7941 -2.3642 -2.9202 22 1 -6.5406 -3.8774 -2.1859 23 1 -5.4082 -2.4610 -0.5760 24 6 -1.1988 -6.0284 -4.4032 25 6 -2.3162 -6.8196 -4.5933 26 6 -2.7510 -7.1053 -5.8740 27 6 -2.0635 -6.6068 -6.9647 28 6 -0.9430 -5.8200 -6.7746 29 6 -0.5105 -5.5310 -5.4939 30 1 -0.3633 0.0047 1.0276 31 1 -0.3634 0.8875 -0.5180 32 1 -0.3633 -0.8924 -0.5097 33 1 3.9753 2.1530 -0.0103 34 1 5.3057 0.0804 -0.0121 35 1 4.1368 -2.1136 -0.0019 36 1 0.5292 -2.3996 0.6055 37 1 2.0647 -3.2857 0.4455 38 1 0.1358 -4.5981 -0.9033 39 1 0.9446 -4.4942 -3.6075 40 1 -0.5913 -3.6089 -3.4465 41 1 -1.9867 -6.2288 -1.3772 42 1 -4.9653 -5.4774 -0.0681 43 1 -2.8517 -7.2115 -3.7411 44 1 -3.6263 -7.7204 -6.0225 45 1 -2.4016 -6.8323 -7.9653 46 1 -0.4056 -5.4308 -7.6268 47 1 0.3649 -4.9161 -5.3454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267522575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:58 Heat of formation + Delta-G solvation = 15.123446 kcal Electronic energy + Delta-G solvation = -28888.408918 eV Core-core repulsion = 25035.296949 eV Total energy + Delta-G solvation = -3853.111970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.55190 -40.57910 -39.90085 -37.41225 -35.07381 -34.74101 -33.89269 -33.58405 -31.79932 -31.07071 -30.11339 -28.69696 -27.76528 -26.12710 -24.15092 -23.57261 -23.09461 -22.67375 -21.41223 -21.03824 -19.28939 -18.15752 -17.80569 -17.67707 -17.31394 -16.88586 -16.73507 -16.23022 -15.79546 -15.72512 -15.57318 -15.52775 -15.16736 -14.89956 -14.38313 -14.17271 -14.06977 -14.00602 -13.87788 -13.68660 -13.44076 -13.38081 -13.21282 -13.05301 -12.97251 -12.86799 -12.51085 -12.28608 -12.07828 -11.90392 -11.80903 -11.51251 -11.04534 -10.95156 -10.58877 -10.38385 -9.88899 -9.70603 -9.65043 -9.47683 -8.98280 -7.91398 -5.18042 0.16285 0.38146 0.61346 0.68600 1.41525 1.47153 1.52106 1.73799 2.37010 2.56525 2.90020 3.04359 3.40849 3.42496 3.64663 3.88431 3.91050 3.98759 4.05426 4.06927 4.13946 4.22957 4.28308 4.35327 4.42488 4.50884 4.52632 4.56387 4.60851 4.65302 4.67586 4.71200 4.83947 4.88741 4.93646 5.11541 5.14506 5.24673 5.26806 5.33008 5.33399 5.56913 5.61349 5.73389 5.77809 5.83016 5.96831 6.28107 6.32325 6.71901 7.07398 7.37501 7.41174 8.05743 8.34884 9.30350 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.003397 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.245128 B = 8240.842305 C = 9869.257490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.119 3.881 3 N -0.517 5.517 4 C 0.084 3.916 5 C -0.175 4.175 6 C -0.069 4.069 7 C -0.125 4.125 8 C -0.094 4.094 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.699 5.699 12 C 0.127 3.873 13 C 0.201 3.799 14 H 0.098 0.902 15 N -0.713 5.713 16 C -0.201 4.201 17 H 0.055 0.945 18 C -0.052 4.052 19 N -0.955 5.955 20 Si 0.937 3.063 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.294 1.294 24 C -0.095 4.095 25 C -0.099 4.099 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.131 4.131 29 C -0.134 4.134 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.382 0.618 42 H 0.248 0.752 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.065 1.358 -0.870 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.018 4.018 3 N -0.228 5.228 4 C -0.073 4.073 5 C -0.195 4.195 6 C -0.094 4.094 7 C -0.127 4.127 8 C -0.134 4.134 9 C 0.299 3.701 10 O -0.469 6.469 11 N -0.349 5.349 12 C 0.001 3.999 13 C 0.091 3.909 14 H 0.115 0.885 15 N -0.352 5.352 16 C -0.333 4.333 17 H 0.073 0.927 18 C -0.245 4.245 19 N -0.606 5.606 20 Si 0.770 3.230 21 H -0.209 1.209 22 H -0.225 1.225 23 H -0.221 1.221 24 C -0.098 4.098 25 C -0.117 4.117 26 C -0.157 4.157 27 C -0.150 4.150 28 C -0.149 4.149 29 C -0.152 4.152 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.196 0.804 34 H 0.186 0.814 35 H 0.176 0.824 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.215 0.785 42 H 0.058 0.942 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.159 0.841 46 H 0.159 0.841 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.687 2.765 -1.580 16.007 hybrid contribution -1.168 -0.360 0.406 1.288 sum 14.519 2.404 -1.174 14.764 Atomic orbital electron populations 1.20725 0.89350 1.02785 1.03455 1.21233 0.97093 0.88571 0.94872 1.67485 1.11660 1.29590 1.14017 1.23254 0.88913 1.00293 0.94865 1.22442 1.02960 0.92536 1.01529 1.21838 0.93032 1.00136 0.94414 1.20285 0.95215 0.94818 1.02412 1.20653 1.03087 0.96013 0.93643 1.20878 0.77349 0.80299 0.91616 1.90673 1.56409 1.52245 1.47527 1.45727 1.55491 1.23788 1.09925 1.21597 0.97814 0.97323 0.83149 1.19506 0.88812 0.94877 0.87715 0.88455 1.42364 1.23467 1.36587 1.32759 1.19032 0.97389 1.03868 1.13048 0.92743 1.25054 0.99538 1.00131 0.99813 1.69723 1.28378 1.37079 1.25371 0.85613 0.80521 0.80009 0.76890 1.20898 1.22532 1.22105 1.20658 0.95962 0.96820 0.96316 1.20992 0.95944 0.97786 0.97024 1.21357 1.00429 1.01142 0.92728 1.21357 0.95997 0.98414 0.99201 1.21371 0.97406 0.98896 0.97194 1.21297 1.00726 1.00490 0.92686 0.88825 0.91378 0.91963 0.80368 0.81417 0.82357 0.86815 0.84479 0.75293 0.91141 0.94933 0.78473 0.94240 0.87745 0.85530 0.84060 0.84093 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.09 9.39 71.24 0.67 -2.42 16 2 C 0.12 3.55 6.78 42.54 0.29 3.84 16 3 N -0.52 -15.29 10.27 -183.89 -1.89 -17.18 16 4 C 0.08 1.88 11.18 84.69 0.95 2.82 16 5 C -0.18 -3.27 10.11 22.36 0.23 -3.05 16 6 C -0.07 -1.43 9.84 22.47 0.22 -1.21 16 7 C -0.12 -3.24 4.39 -19.77 -0.09 -3.32 16 8 C -0.09 -2.18 5.16 29.10 0.15 -2.03 16 9 C 0.51 16.00 7.03 87.66 0.62 16.62 16 10 O -0.59 -23.18 16.03 -3.04 -0.05 -23.22 16 11 N -0.70 -21.43 5.39 -463.05 -2.50 -23.92 16 12 C 0.13 4.29 3.89 86.38 0.34 4.62 16 13 C 0.20 6.80 3.26 44.24 0.14 6.94 16 14 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 15 N -0.71 -29.82 3.84 -326.50 -1.26 -31.08 16 16 C -0.20 -9.97 8.56 84.03 0.72 -9.25 16 17 H 0.05 2.87 6.98 -2.91 -0.02 2.85 16 18 C -0.05 -2.77 5.50 84.86 0.47 -2.30 16 19 N -0.95 -52.90 13.06 21.65 0.28 -52.62 16 20 Si 0.94 45.20 29.55 68.60 2.03 47.23 16 21 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 24 C -0.09 -3.29 5.16 -19.87 -0.10 -3.40 16 25 C -0.10 -3.64 8.97 22.27 0.20 -3.44 16 26 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 27 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 28 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 29 C -0.13 -4.09 9.14 22.27 0.20 -3.89 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.98 6.14 -2.38 -0.01 1.97 16 33 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.11 2.54 7.02 -2.39 -0.02 2.53 16 37 H 0.14 2.15 8.06 -2.39 -0.02 2.13 16 38 H 0.41 11.53 8.14 -92.72 -0.75 10.78 16 39 H 0.07 2.17 6.86 -2.38 -0.02 2.15 16 40 H 0.03 1.34 7.20 -2.38 -0.02 1.32 16 41 H 0.38 16.96 8.04 -92.71 -0.75 16.21 16 42 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 43 H 0.10 4.33 7.52 -2.91 -0.02 4.31 16 44 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 45 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 47 H 0.13 3.56 6.21 -2.91 -0.02 3.54 16 Total: -1.00 -69.06 391.24 1.80 -67.26 By element: Atomic # 1 Polarization: 44.34 SS G_CDS: -0.49 Total: 43.85 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 5.67 Total: -10.31 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.36 Total: -124.80 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.06 1.80 -67.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267522575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.382 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds