Wall clock time and date at job start Tue Mar 31 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31888 * 119.61921 * 2 1 4 4 C 1.31849 * 121.72494 * 180.30965 * 3 2 1 5 5 C 1.38232 * 120.76766 * 359.71271 * 4 3 2 6 6 C 1.38626 * 119.15642 * 359.97438 * 5 4 3 7 7 C 1.38180 * 119.61736 * 179.73731 * 2 1 3 8 8 C 1.50701 * 120.41839 * 359.97285 * 7 2 1 9 9 C 1.50703 * 109.47064 * 84.72494 * 8 7 2 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 9 14 14 C 1.38233 * 120.00099 * 269.72651 * 13 12 11 15 15 C 1.38239 * 119.99655 * 179.76882 * 14 13 12 16 16 C 1.38228 * 120.00132 * 0.48003 * 15 14 13 17 17 C 1.50705 * 120.00130 * 179.77080 * 16 15 14 18 18 N 1.46499 * 109.46818 * 270.02476 * 17 16 15 19 19 C 1.36939 * 119.99690 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99864 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46866 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47080 * 119.99739 * 23 21 19 26 26 H 1.48494 * 109.46998 * 239.99869 * 23 21 19 27 27 C 1.38237 * 120.00223 * 359.79707 * 16 15 14 28 28 C 1.38238 * 119.99946 * 359.94921 * 27 16 15 29 29 H 1.08996 * 109.46721 * 270.26271 * 1 2 3 30 30 H 1.09004 * 109.46744 * 30.26333 * 1 2 3 31 31 H 1.08993 * 109.47181 * 150.26433 * 1 2 3 32 32 H 1.08001 * 119.61821 * 179.73147 * 4 3 2 33 33 H 1.07997 * 120.42186 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.79084 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47060 * 324.72531 * 8 7 2 36 36 H 1.09001 * 109.47380 * 204.72443 * 8 7 2 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.08003 * 119.99927 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99208 * 180.25033 * 15 14 13 42 42 H 1.09001 * 109.46742 * 30.02239 * 17 16 15 43 43 H 1.08992 * 109.47420 * 150.02142 * 17 16 15 44 44 H 0.96997 * 120.00409 * 0.02562 * 18 17 16 45 45 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.00143 * 179.97438 * 27 16 15 47 47 H 1.07991 * 120.00062 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1589 1.1465 0.0000 4 6 3.4764 1.1950 -0.0061 5 6 4.2268 0.0340 -0.0067 6 6 3.5766 -1.1903 -0.0004 7 6 2.1899 -1.2012 0.0055 8 6 1.4372 -2.5068 0.0121 9 6 1.0726 -2.8836 -1.4008 10 8 1.3928 -2.1631 -2.3223 11 7 0.3906 -4.0211 -1.6402 12 6 0.0366 -4.3877 -3.0137 13 6 -0.7162 -5.6932 -3.0071 14 6 -0.0293 -6.8877 -3.1169 15 6 -0.7195 -8.0854 -3.1060 16 6 -2.0973 -8.0881 -2.9953 17 6 -2.8502 -9.3936 -2.9887 18 7 -3.2042 -9.7601 -4.3622 19 6 -3.8963 -10.9164 -4.6055 20 1 -4.1807 -11.5583 -3.7849 21 6 -4.2312 -11.2640 -5.9070 22 7 -3.8841 -10.4820 -6.9071 23 14 -5.1760 -12.8410 -6.2389 24 1 -5.4444 -13.5368 -4.9546 25 1 -6.4628 -12.5163 -6.9049 26 1 -4.3711 -13.7239 -7.1208 27 6 -2.7848 -6.8933 -2.8913 28 6 -2.0942 -5.6958 -2.8969 29 1 -0.3632 0.0047 1.0276 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3633 -0.8923 -0.5097 32 1 3.9753 2.1529 -0.0102 33 1 5.3057 0.0802 -0.0121 34 1 4.1367 -2.1137 -0.0012 35 1 0.5291 -2.3997 0.6055 36 1 2.0646 -3.2858 0.4454 37 1 0.1348 -4.5975 -0.9031 38 1 0.9449 -4.4954 -3.6066 39 1 -0.5902 -3.6086 -3.4476 40 1 1.0469 -6.8854 -3.2078 41 1 -0.1824 -9.0188 -3.1877 42 1 -2.2230 -10.1724 -2.5549 43 1 -3.7584 -9.2863 -2.3957 44 1 -2.9477 -9.1842 -5.0993 45 1 -4.1185 -10.7247 -7.8166 46 1 -3.8613 -6.8954 -2.8053 47 1 -2.6312 -4.7624 -2.8153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270075429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:45 Heat of formation + Delta-G solvation = 26.405744 kcal Electronic energy + Delta-G solvation = -26961.553132 eV Core-core repulsion = 23108.930400 eV Total energy + Delta-G solvation = -3852.622732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96114 -39.82558 -39.04114 -35.62734 -34.37041 -34.15765 -33.31536 -32.15260 -30.76428 -30.39513 -29.17315 -27.76503 -26.66619 -24.42900 -23.13356 -22.53578 -22.47796 -22.14753 -20.72829 -20.44443 -17.65468 -17.30921 -17.20890 -16.84008 -16.42445 -15.76839 -15.52973 -15.06203 -14.99012 -14.92179 -14.61947 -14.53910 -13.76154 -13.55314 -13.46506 -13.40501 -13.28716 -13.20725 -13.18300 -12.78105 -12.55235 -12.45454 -12.36162 -12.06949 -11.88750 -11.76716 -11.11481 -10.90470 -10.77925 -10.62665 -10.35926 -10.06419 -10.00194 -9.81477 -9.76967 -9.33636 -9.12957 -8.94466 -8.73579 -8.47982 -6.98156 -5.80177 -3.10311 0.73951 0.95880 1.35815 1.59463 2.34233 2.97889 3.40851 3.46138 3.48686 3.49132 3.95972 3.97481 4.17593 4.38316 4.51577 4.54698 4.58430 4.62060 4.71461 4.90611 4.94666 4.98319 5.14381 5.18876 5.23652 5.27128 5.28876 5.33415 5.34126 5.53319 5.56268 5.69900 5.71134 5.80837 5.82292 5.87632 6.10674 6.12028 6.12314 6.16723 6.37450 6.44306 6.54130 6.58599 6.64920 7.05748 7.16738 7.22483 7.65918 7.68358 7.93426 8.37386 9.49155 10.04854 10.40451 11.42266 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038049 B = 0.001537 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.714578 B =18207.476664 C =18346.111800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.102 3.898 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.117 4.117 8 C -0.100 4.100 9 C 0.512 3.488 10 O -0.532 6.532 11 N -0.724 5.724 12 C 0.166 3.834 13 C -0.125 4.125 14 C -0.104 4.104 15 C -0.106 4.106 16 C -0.063 4.063 17 C 0.184 3.816 18 N -0.727 5.727 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.106 4.106 28 C -0.103 4.103 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.403 0.597 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.028 0.972 43 H 0.029 0.971 44 H 0.386 0.614 45 H 0.255 0.745 46 H 0.124 0.876 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.392 20.035 18.524 30.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 N -0.195 5.195 4 C -0.055 4.055 5 C -0.199 4.199 6 C -0.087 4.087 7 C -0.120 4.120 8 C -0.141 4.141 9 C 0.297 3.703 10 O -0.408 6.408 11 N -0.376 5.376 12 C 0.043 3.957 13 C -0.126 4.126 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.064 4.064 17 C 0.057 3.943 18 N -0.371 5.371 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.142 0.858 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.051 21.179 17.862 31.065 hybrid contribution 0.047 -1.852 -0.335 1.883 sum 14.098 19.327 17.527 29.656 Atomic orbital electron populations 1.20762 0.89033 1.03836 1.02833 1.21074 0.96878 0.87715 0.93566 1.67527 1.10129 1.29083 1.12794 1.22734 0.89460 0.98500 0.94855 1.22081 1.01456 0.93364 1.03031 1.21443 0.93545 0.98643 0.95019 1.20061 0.94212 0.94821 1.02873 1.20641 1.02280 0.95844 0.95324 1.20479 0.77907 0.80890 0.90980 1.90755 1.53213 1.50975 1.45857 1.46156 1.57741 1.23980 1.09767 1.20160 0.98991 0.93611 0.82889 1.19668 0.93944 0.93913 1.05051 1.20986 0.99447 0.91895 0.99886 1.21126 0.94049 0.97966 0.99347 1.20399 0.93866 0.96193 0.95952 1.19711 0.95320 0.89743 0.89533 1.42343 1.67537 1.26077 1.01159 1.19287 1.27621 0.98215 0.92314 0.90987 1.24767 1.01562 0.98924 0.95579 1.69684 1.51463 1.38122 0.98617 0.86100 0.79323 0.82868 0.77777 1.20495 1.21804 1.21819 1.21131 1.00145 0.91703 0.99490 1.20989 0.93312 0.98018 0.99870 0.90239 0.90191 0.90888 0.82775 0.84761 0.84926 0.87381 0.87647 0.76275 0.90780 0.90708 0.86363 0.85806 0.95392 0.95372 0.78053 0.93482 0.85784 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.39 36.01 0.34 -0.51 16 2 C 0.15 1.45 6.78 -82.59 -0.56 0.89 16 3 N -0.49 -5.29 10.27 -9.47 -0.10 -5.38 16 4 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 5 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16 6 C -0.06 -0.48 9.84 -39.28 -0.39 -0.86 16 7 C -0.12 -1.02 4.39 -104.48 -0.46 -1.48 16 8 C -0.10 -0.63 5.16 -29.03 -0.15 -0.78 16 9 C 0.51 4.83 7.03 -10.98 -0.08 4.75 16 10 O -0.53 -7.40 16.03 5.56 0.09 -7.31 16 11 N -0.72 -5.96 5.55 -61.47 -0.34 -6.30 16 12 C 0.17 1.71 5.80 -5.19 -0.03 1.68 16 13 C -0.13 -1.45 5.25 -104.62 -0.55 -2.00 16 14 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 15 C -0.11 -1.57 9.70 -39.58 -0.38 -1.96 16 16 C -0.06 -1.05 5.25 -104.62 -0.55 -1.60 16 17 C 0.18 3.64 6.38 -5.19 -0.03 3.61 16 18 N -0.73 -18.33 5.59 -61.09 -0.34 -18.68 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C -0.11 -1.57 9.70 -39.58 -0.38 -1.95 16 28 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.55 6.14 -51.93 -0.32 0.24 16 32 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.11 0.46 7.02 -51.93 -0.36 0.09 16 36 H 0.11 0.42 8.06 -51.93 -0.42 0.00 16 37 H 0.40 2.45 8.46 -40.82 -0.35 2.10 16 38 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 44 H 0.39 10.42 7.66 -40.82 -0.31 10.10 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -35.08 400.76 -10.57 -45.65 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.79 Total: 8.18 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -4.83 Total: -11.94 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.06 Total: -57.80 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.09 Total: -7.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.08 -10.57 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270075429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.057 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds