Wall clock time and date at job start Tue Mar 31 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31888 * 119.61921 * 2 1 4 4 C 1.31849 * 121.72494 * 180.30965 * 3 2 1 5 5 C 1.38232 * 120.76766 * 359.71271 * 4 3 2 6 6 C 1.38626 * 119.15642 * 359.97438 * 5 4 3 7 7 C 1.38180 * 119.61736 * 179.73731 * 2 1 3 8 8 C 1.50701 * 120.41839 * 359.97285 * 7 2 1 9 9 C 1.50703 * 109.47064 * 84.72494 * 8 7 2 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 9 14 14 C 1.38233 * 120.00099 * 269.72651 * 13 12 11 15 15 C 1.38239 * 119.99655 * 179.76882 * 14 13 12 16 16 C 1.38228 * 120.00132 * 0.48003 * 15 14 13 17 17 C 1.50705 * 120.00130 * 179.77080 * 16 15 14 18 18 N 1.46499 * 109.46818 * 270.02476 * 17 16 15 19 19 C 1.36939 * 119.99690 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99864 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46866 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47080 * 119.99739 * 23 21 19 26 26 H 1.48494 * 109.46998 * 239.99869 * 23 21 19 27 27 C 1.38237 * 120.00223 * 359.79707 * 16 15 14 28 28 C 1.38238 * 119.99946 * 359.94921 * 27 16 15 29 29 H 1.08996 * 109.46721 * 270.26271 * 1 2 3 30 30 H 1.09004 * 109.46744 * 30.26333 * 1 2 3 31 31 H 1.08993 * 109.47181 * 150.26433 * 1 2 3 32 32 H 1.08001 * 119.61821 * 179.73147 * 4 3 2 33 33 H 1.07997 * 120.42186 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.79084 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47060 * 324.72531 * 8 7 2 36 36 H 1.09001 * 109.47380 * 204.72443 * 8 7 2 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.08003 * 119.99927 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99208 * 180.25033 * 15 14 13 42 42 H 1.09001 * 109.46742 * 30.02239 * 17 16 15 43 43 H 1.08992 * 109.47420 * 150.02142 * 17 16 15 44 44 H 0.96997 * 120.00409 * 0.02562 * 18 17 16 45 45 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.00143 * 179.97438 * 27 16 15 47 47 H 1.07991 * 120.00062 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1589 1.1465 0.0000 4 6 3.4764 1.1950 -0.0061 5 6 4.2268 0.0340 -0.0067 6 6 3.5766 -1.1903 -0.0004 7 6 2.1899 -1.2012 0.0055 8 6 1.4372 -2.5068 0.0121 9 6 1.0726 -2.8836 -1.4008 10 8 1.3928 -2.1631 -2.3223 11 7 0.3906 -4.0211 -1.6402 12 6 0.0366 -4.3877 -3.0137 13 6 -0.7162 -5.6932 -3.0071 14 6 -0.0293 -6.8877 -3.1169 15 6 -0.7195 -8.0854 -3.1060 16 6 -2.0973 -8.0881 -2.9953 17 6 -2.8502 -9.3936 -2.9887 18 7 -3.2042 -9.7601 -4.3622 19 6 -3.8963 -10.9164 -4.6055 20 1 -4.1807 -11.5583 -3.7849 21 6 -4.2312 -11.2640 -5.9070 22 7 -3.8841 -10.4820 -6.9071 23 14 -5.1760 -12.8410 -6.2389 24 1 -5.4444 -13.5368 -4.9546 25 1 -6.4628 -12.5163 -6.9049 26 1 -4.3711 -13.7239 -7.1208 27 6 -2.7848 -6.8933 -2.8913 28 6 -2.0942 -5.6958 -2.8969 29 1 -0.3632 0.0047 1.0276 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3633 -0.8923 -0.5097 32 1 3.9753 2.1529 -0.0102 33 1 5.3057 0.0802 -0.0121 34 1 4.1367 -2.1137 -0.0012 35 1 0.5291 -2.3997 0.6055 36 1 2.0646 -3.2858 0.4454 37 1 0.1348 -4.5975 -0.9031 38 1 0.9449 -4.4954 -3.6066 39 1 -0.5902 -3.6086 -3.4476 40 1 1.0469 -6.8854 -3.2078 41 1 -0.1824 -9.0188 -3.1877 42 1 -2.2230 -10.1724 -2.5549 43 1 -3.7584 -9.2863 -2.3957 44 1 -2.9477 -9.1842 -5.0993 45 1 -4.1185 -10.7247 -7.8166 46 1 -3.8613 -6.8954 -2.8053 47 1 -2.6312 -4.7624 -2.8153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270075429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:44 Heat of formation + Delta-G solvation = 3.933658 kcal Electronic energy + Delta-G solvation = -26962.527595 eV Core-core repulsion = 23108.930400 eV Total energy + Delta-G solvation = -3853.597195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59199 -40.69847 -39.99386 -36.94736 -35.74840 -34.77540 -33.88926 -33.71547 -31.88444 -31.83726 -29.93910 -28.57819 -27.75487 -25.90702 -24.22137 -23.61538 -23.60816 -22.84593 -21.68209 -21.35733 -19.33143 -18.36762 -17.80652 -17.49579 -17.17655 -16.84138 -16.71277 -16.39533 -15.91642 -15.90131 -15.62785 -15.33786 -15.24414 -14.93402 -14.44451 -14.32727 -14.24053 -14.06271 -13.97739 -13.68082 -13.55443 -13.34053 -13.15687 -13.08189 -13.00719 -12.95306 -12.80015 -12.29739 -12.13838 -11.95959 -11.89714 -11.72222 -11.15083 -11.00158 -10.63517 -10.39065 -10.11184 -9.80486 -9.74599 -9.58994 -9.03660 -7.96492 -5.26749 0.13148 0.27927 0.37956 0.51953 1.47722 1.48458 1.58812 1.64537 2.23648 2.55243 2.82743 2.96487 3.37113 3.42196 3.63129 3.67022 3.88896 3.91584 3.98633 4.03192 4.07430 4.13183 4.15635 4.24516 4.30038 4.49877 4.56571 4.57948 4.63850 4.68992 4.71090 4.72105 4.72780 4.84704 4.90611 4.90943 5.08859 5.14656 5.21243 5.25790 5.31599 5.38800 5.47358 5.47968 5.61358 5.82583 5.82727 6.07727 6.24412 6.57037 7.07415 7.26169 7.31145 8.04359 8.29054 9.26956 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038049 B = 0.001537 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.714578 B =18207.476664 C =18346.111800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.119 3.881 3 N -0.520 5.520 4 C 0.084 3.916 5 C -0.180 4.180 6 C -0.072 4.072 7 C -0.128 4.128 8 C -0.093 4.093 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.712 5.712 12 C 0.172 3.828 13 C -0.108 4.108 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.087 4.087 17 C 0.185 3.815 18 N -0.739 5.739 19 C -0.248 4.248 20 H 0.079 0.921 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.116 4.116 28 C -0.098 4.098 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.416 0.584 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.121 0.879 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.121 0.879 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.348 19.990 20.243 32.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 N -0.230 5.230 4 C -0.073 4.073 5 C -0.200 4.200 6 C -0.097 4.097 7 C -0.130 4.130 8 C -0.133 4.133 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.365 5.365 12 C 0.049 3.951 13 C -0.109 4.109 14 C -0.116 4.116 15 C -0.135 4.135 16 C -0.088 4.088 17 C 0.059 3.941 18 N -0.382 5.382 19 C -0.379 4.379 20 H 0.097 0.903 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.135 4.135 28 C -0.116 4.116 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.191 0.809 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.253 0.747 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.160 0.840 41 H 0.139 0.861 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.139 0.861 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.999 21.109 19.662 32.514 hybrid contribution -0.162 -1.737 -0.795 1.917 sum 14.837 19.372 18.867 30.844 Atomic orbital electron populations 1.20772 0.88298 1.03266 1.03842 1.21440 0.97773 0.88231 0.94373 1.67506 1.11394 1.30055 1.14052 1.23180 0.89153 1.00065 0.94895 1.22421 1.02836 0.92896 1.01832 1.21856 0.93649 0.99788 0.94440 1.20326 0.94867 0.95300 1.02558 1.20703 1.03690 0.95528 0.93401 1.20973 0.76883 0.80202 0.91731 1.90745 1.55192 1.52454 1.47589 1.45995 1.57184 1.23949 1.09341 1.19997 0.98534 0.92538 0.84061 1.19782 0.93693 0.94259 1.03133 1.21191 1.00588 0.91116 0.98721 1.21172 0.93469 0.98977 0.99835 1.20165 0.94522 0.95139 0.98976 1.19777 0.95778 0.91796 0.86748 1.42552 1.67349 1.25302 1.03004 1.19720 1.26756 0.98867 0.92585 0.90293 1.25608 1.03250 1.02324 0.95508 1.69843 1.53329 1.40107 0.98732 0.85037 0.77505 0.79047 0.77929 1.18797 1.22033 1.22032 1.21176 1.00202 0.92058 1.00016 1.21194 0.93720 0.97966 0.98721 0.88396 0.91467 0.90666 0.80902 0.82114 0.82675 0.85055 0.84606 0.74657 0.91128 0.91114 0.84049 0.86092 0.95139 0.95136 0.79537 0.93991 0.86093 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.39 71.24 0.67 -0.92 16 2 C 0.12 2.31 6.78 42.54 0.29 2.59 16 3 N -0.52 -11.30 10.27 -183.88 -1.89 -13.19 16 4 C 0.08 1.38 11.18 84.69 0.95 2.33 16 5 C -0.18 -2.38 10.11 22.36 0.23 -2.15 16 6 C -0.07 -0.98 9.84 22.47 0.22 -0.76 16 7 C -0.13 -2.01 4.39 -19.77 -0.09 -2.10 16 8 C -0.09 -0.90 5.16 29.10 0.15 -0.75 16 9 C 0.51 8.52 7.03 87.66 0.62 9.14 16 10 O -0.58 -15.49 16.03 -3.02 -0.05 -15.54 16 11 N -0.71 -9.66 5.55 -466.78 -2.59 -12.25 16 12 C 0.17 3.13 5.80 85.63 0.50 3.62 16 13 C -0.11 -2.24 5.25 -19.86 -0.10 -2.34 16 14 C -0.10 -2.21 9.70 22.27 0.22 -2.00 16 15 C -0.12 -3.33 9.70 22.27 0.22 -3.11 16 16 C -0.09 -2.86 5.25 -19.87 -0.10 -2.97 16 17 C 0.18 7.37 6.38 85.63 0.55 7.91 16 18 N -0.74 -37.88 5.59 -347.18 -1.94 -39.82 16 19 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 23 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 C -0.12 -3.34 9.70 22.27 0.22 -3.12 16 28 C -0.10 -2.21 9.70 22.27 0.22 -2.00 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.06 6.14 -2.39 -0.01 1.04 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.13 0.66 7.02 -2.39 -0.02 0.64 16 36 H 0.14 0.49 8.06 -2.39 -0.02 0.48 16 37 H 0.42 3.55 8.46 -92.71 -0.78 2.77 16 38 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 39 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 40 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16 43 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 44 H 0.37 20.66 7.66 -92.71 -0.71 19.95 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 47 H 0.14 2.56 8.06 -2.92 -0.02 2.54 16 Total: -1.00 -77.49 400.76 1.38 -76.11 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.50 Total: 29.65 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 6.04 Total: -13.44 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -6.14 Total: -124.72 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.05 Total: -15.54 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.49 1.38 -76.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270075429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.048 kcal (2) G-P(sol) polarization free energy of solvation -77.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds