Wall clock time and date at job start Tue Mar 31 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.88878 * 2 1 4 4 N 1.46498 * 109.47173 * 303.88679 * 3 2 1 5 5 C 1.36942 * 120.00180 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99454 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99986 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00312 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46807 * 59.99852 * 9 7 5 11 11 H 1.48494 * 109.47151 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47138 * 300.00525 * 9 7 5 13 13 C 1.55151 * 111.00520 * 123.88099 * 2 1 3 14 14 C 1.54321 * 102.94173 * 82.61154 * 13 2 1 15 15 N 1.47022 * 107.27219 * 22.19381 * 14 13 2 16 16 C 1.34777 * 125.65063 * 181.02937 * 15 14 13 17 17 O 1.21559 * 119.99932 * 184.88154 * 16 15 14 18 18 C 1.47776 * 119.99780 * 4.86890 * 16 15 14 19 19 C 1.40660 * 119.69479 * 137.50658 * 18 16 15 20 20 C 1.35848 * 120.87455 * 180.02562 * 19 18 16 21 21 C 1.40393 * 119.84341 * 359.97438 * 20 19 18 22 22 C 1.40635 * 121.97067 * 180.02562 * 21 20 19 23 23 C 1.36223 * 118.73014 * 179.97438 * 22 21 20 24 24 N 1.32601 * 121.89919 * 0.02562 * 23 22 21 25 25 C 1.31234 * 122.74237 * 359.97438 * 24 23 22 26 26 C 1.40551 * 119.88452 * 359.97438 * 25 24 23 27 27 C 1.38564 * 119.70487 * 317.50751 * 18 16 15 28 28 C 1.47427 * 108.70032 * 1.28840 * 15 14 13 29 29 H 1.09000 * 109.47147 * 296.12069 * 1 2 3 30 30 H 1.09001 * 109.47311 * 56.11486 * 1 2 3 31 31 H 1.08999 * 109.47180 * 176.11971 * 1 2 3 32 32 H 1.09007 * 109.46591 * 63.87908 * 3 2 1 33 33 H 1.08996 * 109.47765 * 183.87882 * 3 2 1 34 34 H 0.97001 * 120.00294 * 359.97438 * 4 3 2 35 35 H 0.96998 * 120.00291 * 179.97438 * 8 7 5 36 36 H 1.08993 * 110.72225 * 324.24703 * 13 2 1 37 37 H 1.09000 * 110.87447 * 201.04321 * 13 2 1 38 38 H 1.09001 * 109.88135 * 262.77512 * 14 13 2 39 39 H 1.09001 * 110.01169 * 141.68514 * 14 13 2 40 40 H 1.08000 * 119.56063 * 0.28267 * 19 18 16 41 41 H 1.07992 * 120.07515 * 179.97438 * 20 19 18 42 42 H 1.08003 * 120.64012 * 359.95418 * 22 21 20 43 43 H 1.08001 * 119.05192 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.06039 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.34057 * 0.02562 * 27 18 16 46 46 H 1.08992 * 110.36530 * 94.48324 * 28 15 14 47 47 H 1.09005 * 110.36562 * 216.80970 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 7 1.5302 2.1603 -1.1466 5 6 1.8803 3.4678 -1.3546 6 1 2.5581 3.9602 -0.6731 7 6 1.3639 4.1600 -2.4413 8 7 0.5382 3.5597 -3.2721 9 14 1.8409 5.9437 -2.7247 10 1 3.3120 6.0402 -2.9039 11 1 1.1591 6.4510 -3.9425 12 1 1.4306 6.7581 -1.5527 13 6 2.0861 -0.8074 1.2025 14 6 2.0295 -2.2642 0.6964 15 7 2.0153 -2.2157 -0.7729 16 6 1.9493 -3.2828 -1.5936 17 8 2.0334 -3.1304 -2.7966 18 6 1.7749 -4.6380 -1.0307 19 6 0.8835 -5.5374 -1.6431 20 6 0.7043 -6.7887 -1.1456 21 6 1.4156 -7.1959 -0.0057 22 6 1.2650 -8.4805 0.5465 23 6 1.9886 -8.8061 1.6538 24 7 2.8256 -7.9483 2.2212 25 6 3.0171 -6.7340 1.7617 26 6 2.3195 -6.2984 0.6219 27 6 2.4908 -5.0111 0.0954 28 6 2.0917 -0.8067 -1.2001 29 1 -0.3633 0.4524 0.9227 30 1 -0.3634 0.5729 -0.8531 31 1 -0.3633 -1.0253 -0.0695 32 1 1.7823 1.9302 0.9228 33 1 3.1629 1.4035 -0.0695 34 1 0.9216 1.7179 -1.7589 35 1 0.1771 4.0435 -4.0313 36 1 1.4520 -0.6790 2.0796 37 1 3.1127 -0.5160 1.4245 38 1 1.1229 -2.7480 1.0601 39 1 2.9060 -2.8131 1.0408 40 1 0.3374 -5.2305 -2.5229 41 1 0.0162 -7.4686 -1.6258 42 1 0.5885 -9.1951 0.1015 43 1 1.8767 -9.7910 2.0825 44 1 3.7095 -6.0706 2.2584 45 1 3.1738 -4.3170 0.5625 46 1 3.1260 -0.5259 -1.3981 47 1 1.4774 -0.6451 -2.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270820943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:21 Heat of formation + Delta-G solvation = 17.407961 kcal Electronic energy + Delta-G solvation = -28651.562701 eV Core-core repulsion = 24798.549795 eV Total energy + Delta-G solvation = -3853.012906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05729 -41.18900 -39.42710 -37.94797 -36.54192 -34.59541 -33.88011 -32.42830 -32.13598 -30.89039 -30.33006 -28.04330 -27.34823 -25.86458 -25.08432 -24.49420 -23.64688 -23.05089 -21.17988 -20.23582 -19.39808 -18.87729 -18.30492 -17.84137 -17.34449 -17.05631 -16.55007 -16.42739 -15.96382 -15.57174 -15.55402 -15.30202 -15.18188 -14.96808 -14.79218 -14.52263 -14.45370 -14.31183 -13.82337 -13.58210 -13.39800 -13.10658 -13.02686 -12.94339 -12.84335 -12.79095 -12.66883 -12.36382 -12.20587 -12.01974 -11.68804 -11.52615 -11.39876 -11.24228 -11.15823 -10.91480 -10.48210 -10.20167 -9.74127 -9.11297 -8.97021 -7.93259 -5.21619 -0.78272 -0.30842 0.79162 1.42224 1.46936 1.50209 1.56198 1.78594 2.15268 2.56909 3.03730 3.20518 3.39723 3.42694 3.51679 3.57947 3.67033 3.68656 3.80365 3.86649 3.96144 4.05253 4.15858 4.26975 4.31517 4.35301 4.38566 4.55677 4.64479 4.66774 4.73247 4.77140 4.79248 4.84205 4.88881 4.94302 4.98310 5.07345 5.08861 5.13567 5.20258 5.28422 5.31798 5.32950 5.47394 5.51875 5.59013 5.71437 6.28487 6.40220 6.94900 6.98500 7.34991 8.12655 8.33771 9.30260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.002220 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.899415 B =12608.615875 C =13192.932223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C 0.167 3.833 4 N -0.745 5.745 5 C -0.241 4.241 6 H 0.079 0.921 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.973 3.027 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.275 1.275 13 C -0.110 4.110 14 C 0.093 3.907 15 N -0.605 5.605 16 C 0.564 3.436 17 O -0.586 6.586 18 C -0.134 4.134 19 C -0.073 4.073 20 C -0.106 4.106 21 C -0.025 4.025 22 C -0.156 4.156 23 C 0.074 3.926 24 N -0.513 5.513 25 C 0.155 3.845 26 C -0.129 4.129 27 C -0.038 4.038 28 C 0.125 3.875 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.025 0.975 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.177 0.823 44 H 0.193 0.807 45 H 0.166 0.834 46 H 0.060 0.940 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -26.719 15.407 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C 0.040 3.960 4 N -0.388 5.388 5 C -0.373 4.373 6 H 0.097 0.903 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.803 3.197 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.201 1.201 13 C -0.148 4.148 14 C -0.028 4.028 15 N -0.337 5.337 16 C 0.354 3.646 17 O -0.467 6.467 18 C -0.137 4.137 19 C -0.093 4.093 20 C -0.124 4.124 21 C -0.030 4.030 22 C -0.176 4.176 23 C -0.069 4.069 24 N -0.221 5.221 25 C -0.016 4.016 26 C -0.131 4.131 27 C -0.058 4.058 28 C 0.002 3.998 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.181 0.819 42 H 0.184 0.816 43 H 0.194 0.806 44 H 0.210 0.790 45 H 0.183 0.817 46 H 0.079 0.921 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.621 -26.969 15.534 31.233 hybrid contribution -0.685 1.559 -2.166 2.755 sum 1.937 -25.410 13.369 28.777 Atomic orbital electron populations 1.21583 0.93522 1.00950 1.01938 1.21860 0.96173 0.94086 0.95065 1.20775 0.95617 0.89467 0.90124 1.42652 1.55920 1.10435 1.29820 1.19622 1.21370 0.89141 1.07130 0.90306 1.25585 1.00777 1.02578 0.98235 1.69825 1.37332 1.37855 1.17314 0.85209 0.77559 0.80191 0.76790 1.20478 1.22584 1.20114 1.22765 1.03586 0.91610 0.96870 1.22603 1.03827 0.98902 0.77452 1.48512 1.71127 1.05400 1.08674 1.18494 0.76083 0.84783 0.85254 1.90802 1.52617 1.86562 1.16747 1.19728 1.02325 0.93186 0.98434 1.20969 0.96097 0.93382 0.98814 1.21102 1.00039 0.95841 0.95378 1.18602 0.94838 0.94615 0.94960 1.22221 1.01814 0.95775 0.97743 1.22712 0.91497 0.99662 0.92980 1.67536 1.18015 1.04172 1.32398 1.23723 0.94884 0.92405 0.90571 1.19104 1.00148 0.94952 0.98945 1.21803 0.96505 0.95353 0.92153 1.22165 1.00136 0.79860 0.97597 0.90944 0.95096 0.92291 0.94683 0.95699 0.79413 0.94201 0.87117 0.88673 0.89556 0.87902 0.85602 0.81938 0.81602 0.80606 0.79004 0.81668 0.92127 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 8.42 71.98 0.61 -3.12 16 2 C -0.07 -2.06 0.63 -50.71 -0.03 -2.10 16 3 C 0.17 6.20 5.25 86.38 0.45 6.65 16 4 N -0.74 -37.44 5.18 -343.45 -1.78 -39.22 16 5 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 8 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 9 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C -0.11 -1.96 5.91 31.78 0.19 -1.78 16 14 C 0.09 1.54 5.17 86.73 0.45 1.99 16 15 N -0.61 -16.32 3.31 -814.84 -2.70 -19.01 16 16 C 0.56 17.22 7.43 86.77 0.65 17.86 16 17 O -0.59 -24.00 17.24 -3.90 -0.07 -24.07 16 18 C -0.13 -3.00 5.52 -20.09 -0.11 -3.11 16 19 C -0.07 -1.51 9.54 22.31 0.21 -1.29 16 20 C -0.11 -1.61 9.77 22.24 0.22 -1.39 16 21 C -0.02 -0.38 5.75 -21.24 -0.12 -0.50 16 22 C -0.16 -1.73 9.87 22.39 0.22 -1.51 16 23 C 0.07 0.89 11.07 84.11 0.93 1.82 16 24 N -0.51 -7.90 10.30 -195.40 -2.01 -9.91 16 25 C 0.16 2.00 11.05 85.35 0.94 2.94 16 26 C -0.13 -1.95 5.74 -21.32 -0.12 -2.07 16 27 C -0.04 -0.60 8.30 22.81 0.19 -0.41 16 28 C 0.13 4.24 5.61 86.93 0.49 4.72 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.03 1.19 6.65 -2.39 -0.02 1.17 16 31 H 0.06 1.60 7.91 -2.39 -0.02 1.58 16 32 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.03 0.93 8.07 -2.39 -0.02 0.91 16 34 H 0.37 20.42 6.23 -92.71 -0.58 19.84 16 35 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.11 1.48 8.04 -2.39 -0.02 1.46 16 37 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.05 5.74 -2.39 -0.01 1.03 16 40 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.17 1.75 5.38 -2.91 -0.02 1.73 16 46 H 0.06 2.17 7.99 -2.39 -0.02 2.15 16 47 H 0.04 1.73 8.00 -2.38 -0.02 1.71 16 Total: -1.00 -79.47 383.39 2.63 -76.84 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.41 Total: 25.42 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 6.46 Total: 1.95 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -6.21 Total: -128.91 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.07 Total: -24.07 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -79.47 2.63 -76.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270820943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.250 kcal (2) G-P(sol) polarization free energy of solvation -79.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds