Wall clock time and date at job start Tue Mar 31 2020 22:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 110.65669 * 2 1 4 4 N 1.46500 * 109.47115 * 56.80604 * 3 2 1 5 5 C 1.36932 * 120.00044 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00195 * 359.97438 * 5 4 3 7 7 C 1.38810 * 120.00205 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00174 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00087 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47195 * 89.99759 * 9 7 5 11 11 H 1.48493 * 109.47168 * 209.99405 * 9 7 5 12 12 H 1.48495 * 109.47062 * 329.99962 * 9 7 5 13 13 C 1.54614 * 110.73723 * 236.80495 * 2 1 3 14 14 C 1.53999 * 105.04887 * 263.50882 * 13 2 1 15 15 N 1.47486 * 107.08112 * 1.31296 * 14 13 2 16 16 C 1.34781 * 127.03579 * 154.51336 * 15 14 13 17 17 O 1.21594 * 120.00147 * 185.24014 * 16 15 14 18 18 C 1.47442 * 119.99853 * 5.24260 * 16 15 14 19 19 C 1.38960 * 121.16897 * 36.44260 * 18 16 15 20 20 N 1.32192 * 121.31528 * 180.02562 * 19 18 16 21 21 C 1.31202 * 123.69884 * 359.71991 * 20 19 18 22 22 C 1.40386 * 120.91299 * 359.97438 * 21 20 19 23 23 C 1.40391 * 122.14362 * 179.97438 * 22 21 20 24 24 C 1.36233 * 119.48729 * 180.02562 * 23 22 21 25 25 C 1.39300 * 121.10475 * 359.97438 * 24 23 22 26 26 C 1.36442 * 120.94507 * 359.97438 * 25 24 23 27 27 C 1.39688 * 119.43617 * 0.02562 * 26 25 24 28 28 C 1.48116 * 105.93139 * 334.77374 * 15 14 13 29 29 H 1.08999 * 109.46756 * 183.19372 * 1 2 3 30 30 H 1.08999 * 109.46981 * 303.19410 * 1 2 3 31 31 H 1.09001 * 109.46907 * 63.19351 * 1 2 3 32 32 H 1.08993 * 109.46802 * 176.80719 * 3 2 1 33 33 H 1.08998 * 109.46907 * 296.81230 * 3 2 1 34 34 H 0.97002 * 120.00352 * 0.02562 * 4 3 2 35 35 H 0.96995 * 120.00136 * 179.97438 * 8 7 5 36 36 H 1.09006 * 110.32198 * 144.61820 * 13 2 1 37 37 H 1.08996 * 110.41605 * 22.45458 * 13 2 1 38 38 H 1.08997 * 109.91880 * 241.95472 * 14 13 2 39 39 H 1.09002 * 109.91029 * 120.66449 * 14 13 2 40 40 H 1.07995 * 119.33796 * 359.76841 * 19 18 16 41 41 H 1.07996 * 119.54338 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.26131 * 359.97438 * 23 22 21 43 43 H 1.07998 * 119.44954 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.52725 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.27807 * 180.02562 * 26 25 24 46 46 H 1.09008 * 110.65850 * 157.51010 * 28 15 14 47 47 H 1.08999 * 110.66281 * 280.62245 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 1.5345 2.1553 1.1558 5 6 1.8809 3.4635 1.3649 6 1 2.5490 3.9617 0.6780 7 6 1.3741 4.1491 2.4604 8 7 0.5603 3.5419 3.2979 9 14 1.8471 5.9335 2.7460 10 1 0.8758 6.8197 2.0556 11 1 1.8323 6.2225 4.2025 12 1 3.2092 6.1769 2.2068 13 6 2.0776 -0.7917 -1.2100 14 6 2.3764 -2.2003 -0.6641 15 7 1.9872 -2.2052 0.7585 16 6 1.6221 -3.2722 1.4966 17 8 1.2333 -3.1174 2.6382 18 6 1.6942 -4.6271 0.9197 19 6 2.7187 -4.9857 0.0519 20 7 2.7859 -6.1995 -0.4674 21 6 1.9177 -7.1496 -0.2122 22 6 0.8356 -6.9243 0.6533 23 6 -0.1086 -7.9217 0.9440 24 6 -1.1382 -7.6439 1.7917 25 6 -1.2700 -6.3861 2.3759 26 6 -0.3700 -5.3941 2.1161 27 6 0.6980 -5.6452 1.2514 28 6 2.0734 -0.7966 1.2084 29 1 -0.3633 -1.0261 0.0573 30 1 -0.3633 0.5626 0.8600 31 1 -0.3633 0.4635 -0.9172 32 1 3.1580 1.4096 0.0572 33 1 1.7643 1.9351 -0.9172 34 1 0.9348 1.7078 1.7731 35 1 0.2065 4.0209 4.0635 36 1 2.9910 -0.3286 -1.5834 37 1 1.3293 -0.8429 -2.0009 38 1 3.4404 -2.4172 -0.7586 39 1 1.7936 -2.9416 -1.2109 40 1 3.4726 -4.2570 -0.2065 41 1 2.0371 -8.1183 -0.6745 42 1 -0.0199 -8.9016 0.4985 43 1 -1.8644 -8.4115 2.0146 44 1 -2.0960 -6.1938 3.0445 45 1 -0.4823 -4.4231 2.5753 46 1 1.4489 -0.6347 2.0870 47 1 3.1077 -0.5213 1.4143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270846136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:08 Heat of formation + Delta-G solvation = 18.137703 kcal Electronic energy + Delta-G solvation = -29025.371249 eV Core-core repulsion = 25172.389987 eV Total energy + Delta-G solvation = -3852.981262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05869 -40.96664 -39.19780 -38.37158 -36.52627 -34.54281 -33.71467 -32.26735 -32.18979 -30.83237 -30.46871 -28.05045 -27.41032 -25.89117 -24.92934 -24.55732 -23.63495 -23.32776 -20.75440 -20.22039 -19.41008 -19.00527 -18.50832 -18.08862 -17.12738 -16.99671 -16.76988 -16.47636 -15.77018 -15.67737 -15.48912 -15.32329 -15.12044 -15.06715 -14.85222 -14.58799 -14.38886 -14.01819 -13.82693 -13.54249 -13.38516 -13.21712 -13.03689 -12.93051 -12.88555 -12.80405 -12.59786 -12.34028 -12.16252 -12.08624 -11.73516 -11.51843 -11.47714 -11.32380 -11.10660 -10.93786 -10.48310 -10.12613 -9.82572 -9.16798 -8.98045 -7.93887 -5.22527 -0.94458 -0.16656 0.62399 1.46339 1.48387 1.56447 1.56779 1.77009 2.07603 2.56173 2.99123 3.14466 3.36970 3.40097 3.47278 3.58488 3.60226 3.67418 3.81953 3.86648 3.90772 4.14987 4.20956 4.23846 4.27194 4.29133 4.33912 4.50179 4.54693 4.59796 4.68756 4.72345 4.74604 4.82227 4.93125 4.98454 5.01323 5.02655 5.05770 5.10172 5.25151 5.31958 5.37268 5.42465 5.46449 5.50393 5.51160 5.84625 6.27636 6.38834 6.79669 6.93710 7.34040 8.11361 8.32777 9.29910 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.002517 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.243650 B =11123.548789 C =11968.324004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.745 5.745 5 C -0.239 4.239 6 H 0.080 0.920 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.974 3.026 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.267 1.267 13 C -0.112 4.112 14 C 0.097 3.903 15 N -0.610 5.610 16 C 0.576 3.424 17 O -0.580 6.580 18 C -0.195 4.195 19 C 0.129 3.871 20 N -0.514 5.514 21 C 0.190 3.810 22 C -0.135 4.135 23 C -0.068 4.068 24 C -0.124 4.124 25 C -0.085 4.085 26 C -0.148 4.148 27 C -0.009 4.009 28 C 0.124 3.876 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.174 0.826 41 H 0.213 0.787 42 H 0.182 0.818 43 H 0.165 0.835 44 H 0.143 0.857 45 H 0.110 0.890 46 H 0.046 0.954 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -28.585 -13.106 31.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C 0.041 3.959 4 N -0.388 5.388 5 C -0.371 4.371 6 H 0.098 0.902 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.191 1.191 13 C -0.151 4.151 14 C -0.025 4.025 15 N -0.341 5.341 16 C 0.367 3.633 17 O -0.461 6.461 18 C -0.201 4.201 19 C -0.014 4.014 20 N -0.221 5.221 21 C 0.020 3.980 22 C -0.137 4.137 23 C -0.087 4.087 24 C -0.141 4.141 25 C -0.104 4.104 26 C -0.166 4.166 27 C -0.014 4.014 28 C 0.001 3.999 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.191 0.809 41 H 0.229 0.771 42 H 0.200 0.800 43 H 0.183 0.817 44 H 0.160 0.840 45 H 0.128 0.872 46 H 0.064 0.936 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.289 -28.436 -13.069 31.322 hybrid contribution -0.958 1.892 1.953 2.883 sum 0.331 -26.545 -11.116 28.780 Atomic orbital electron populations 1.21601 0.94261 1.00246 1.01686 1.21663 0.95863 0.94466 0.95315 1.20815 0.95911 0.89239 0.89916 1.42666 1.56927 1.10442 1.28813 1.19665 1.21874 0.89039 1.06523 0.90188 1.25596 1.00896 1.02584 0.98151 1.69843 1.38141 1.37797 1.16646 0.85128 0.78198 0.80142 0.76231 1.21411 1.22668 1.19136 1.22598 1.03436 0.92795 0.96228 1.22546 1.01752 0.99047 0.79136 1.48763 1.65669 1.06643 1.13053 1.17946 0.76658 0.84094 0.84623 1.90766 1.48775 1.86460 1.20145 1.21701 1.00912 0.93411 1.04030 1.23072 0.94898 0.93931 0.89490 1.67281 1.28624 1.01303 1.24928 1.24063 0.85809 0.98873 0.89302 1.19294 0.99827 0.93598 1.00946 1.21520 0.91828 0.99202 0.96139 1.21390 0.99358 0.96683 0.96709 1.21450 0.97830 0.93262 0.97869 1.21147 0.95361 1.00997 0.99096 1.19114 0.93845 0.92831 0.95624 1.22316 1.00752 0.79365 0.97438 0.93347 0.95104 0.91240 0.95127 0.94885 0.79488 0.94226 0.87874 0.88523 0.88420 0.89454 0.80936 0.77058 0.80026 0.81744 0.83954 0.87182 0.93552 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.30 71.99 0.60 -3.48 16 2 C -0.07 -2.24 0.64 -51.09 -0.03 -2.28 16 3 C 0.17 6.39 5.11 86.38 0.44 6.83 16 4 N -0.75 -38.03 5.15 -343.47 -1.77 -39.80 16 5 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 8 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 9 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 C -0.11 -2.31 6.09 31.48 0.19 -2.11 16 14 C 0.10 1.91 5.28 86.53 0.46 2.37 16 15 N -0.61 -18.03 3.19 -813.93 -2.60 -20.62 16 16 C 0.58 19.47 7.35 86.67 0.64 20.11 16 17 O -0.58 -24.87 15.02 -4.01 -0.06 -24.93 16 18 C -0.20 -5.31 5.61 -18.59 -0.10 -5.41 16 19 C 0.13 2.77 9.43 84.81 0.80 3.57 16 20 N -0.51 -9.63 10.22 -193.72 -1.98 -11.61 16 21 C 0.19 2.60 11.00 85.31 0.94 3.54 16 22 C -0.13 -2.29 5.74 -21.33 -0.12 -2.41 16 23 C -0.07 -0.69 9.82 22.33 0.22 -0.47 16 24 C -0.12 -1.44 9.94 22.06 0.22 -1.22 16 25 C -0.08 -1.57 9.96 22.11 0.22 -1.35 16 26 C -0.15 -3.96 9.27 22.20 0.21 -3.76 16 27 C -0.01 -0.23 5.90 -19.95 -0.12 -0.35 16 28 C 0.12 4.35 5.68 86.61 0.49 4.84 16 29 H 0.05 1.56 8.07 -2.39 -0.02 1.54 16 30 H 0.03 1.27 6.69 -2.39 -0.02 1.26 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.03 1.13 8.11 -2.39 -0.02 1.12 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.37 20.82 6.21 -92.71 -0.58 20.24 16 35 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.10 1.75 7.85 -2.38 -0.02 1.73 16 37 H 0.10 1.68 7.87 -2.39 -0.02 1.66 16 38 H 0.10 1.43 7.11 -2.39 -0.02 1.42 16 39 H 0.09 1.51 7.26 -2.39 -0.02 1.49 16 40 H 0.17 3.05 5.91 -2.91 -0.02 3.04 16 41 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 43 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.11 3.70 6.09 -2.91 -0.02 3.68 16 46 H 0.05 2.03 7.71 -2.38 -0.02 2.01 16 47 H 0.08 2.64 8.02 -2.39 -0.02 2.62 16 Total: -1.00 -81.12 379.67 2.67 -78.45 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.42 Total: 29.32 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.35 Total: 1.56 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -6.06 Total: -133.55 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -81.12 2.67 -78.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270846136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.591 kcal (2) G-P(sol) polarization free energy of solvation -81.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds