Wall clock time and date at job start Tue Mar 31 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38352 * 119.46111 * 2 1 4 4 C 1.38363 * 119.30495 * 179.97438 * 3 2 1 5 5 C 1.40024 * 118.28660 * 0.02562 * 4 3 2 6 6 C 1.47834 * 120.56043 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99959 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00424 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00152 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47098 * 179.97438 * 9 8 6 11 11 C 1.38251 * 120.00303 * 255.37582 * 10 9 8 12 12 C 1.38221 * 120.00161 * 179.97438 * 11 10 9 13 13 C 1.38256 * 119.99708 * 359.78519 * 12 11 10 14 14 C 1.38220 * 119.99960 * 0.49305 * 13 12 11 15 15 C 1.38215 * 119.99616 * 75.39643 * 10 9 8 16 16 C 1.50700 * 120.00279 * 359.97438 * 15 10 9 17 17 N 1.46497 * 109.47049 * 178.00844 * 16 15 10 18 18 C 1.46495 * 120.00177 * 273.77523 * 17 16 15 19 19 C 1.36944 * 120.00013 * 93.77947 * 17 16 15 20 20 H 1.08001 * 120.00011 * 21.81777 * 19 17 16 21 21 C 1.38812 * 120.00053 * 201.81978 * 19 17 16 22 22 N 1.31616 * 119.99849 * 15.23091 * 21 19 17 23 23 Si 1.86801 * 119.99888 * 195.23809 * 21 19 17 24 24 H 1.48501 * 109.47268 * 89.99646 * 23 21 19 25 25 H 1.48499 * 109.46624 * 209.99482 * 23 21 19 26 26 H 1.48494 * 109.47263 * 329.99418 * 23 21 19 27 27 C 1.39522 * 118.88214 * 0.27384 * 5 4 3 28 28 N 1.31701 * 120.56598 * 359.41027 * 27 5 4 29 29 H 1.09002 * 109.46852 * 89.99955 * 1 2 3 30 30 H 1.08997 * 109.47398 * 209.99895 * 1 2 3 31 31 H 1.09000 * 109.46999 * 330.00347 * 1 2 3 32 32 H 1.08004 * 120.34802 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.85711 * 179.97438 * 4 3 2 34 34 H 0.96993 * 119.99534 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.47036 * 60.00068 * 9 8 6 36 36 H 1.08995 * 109.47353 * 300.00082 * 9 8 6 37 37 H 1.08004 * 120.00197 * 359.97438 * 11 10 9 38 38 H 1.07994 * 119.99605 * 180.02562 * 12 11 10 39 39 H 1.07996 * 119.99612 * 180.25954 * 13 12 11 40 40 H 1.07995 * 119.99425 * 179.76278 * 14 13 12 41 41 H 1.09003 * 109.46747 * 298.00395 * 16 15 10 42 42 H 1.08993 * 109.47260 * 58.00514 * 16 15 10 43 43 H 1.08999 * 109.46850 * 93.49983 * 18 17 16 44 44 H 1.09000 * 109.47243 * 213.50239 * 18 17 16 45 45 H 1.08995 * 109.46951 * 333.50646 * 18 17 16 46 46 H 0.97003 * 119.99972 * 180.02562 * 22 21 19 47 47 H 1.07998 * 119.71922 * 179.72417 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7082 -0.0967 0.0016 7 8 6.3601 0.9293 0.0021 8 7 6.3321 -1.2914 0.0011 9 6 7.7958 -1.3534 0.0016 10 6 8.2375 -2.7942 0.0015 11 6 8.7287 -3.3668 1.1600 12 6 9.1333 -4.6885 1.1600 13 6 9.0427 -5.4391 0.0024 14 6 8.5570 -4.8649 -1.1573 15 6 8.1520 -3.5430 -1.1571 16 6 7.6165 -2.9189 -2.4199 17 7 7.6719 -3.8967 -3.5094 18 6 8.8967 -4.0447 -4.2993 19 6 6.5787 -4.6725 -3.7895 20 1 5.5951 -4.3517 -3.4793 21 6 6.7346 -5.8711 -4.4721 22 7 7.9290 -6.4119 -4.5877 23 14 5.2494 -6.7163 -5.2265 24 1 5.0599 -6.2349 -6.6185 25 1 5.4679 -8.1852 -5.2362 26 1 4.0400 -6.4010 -4.4247 27 6 3.4716 -1.2043 -0.0059 28 7 2.1558 -1.1487 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6443 2.1382 0.0004 33 1 4.1275 2.1264 0.0001 34 1 5.8120 -2.1100 0.0003 35 1 8.1802 -0.8560 0.8922 36 1 8.1810 -0.8549 -0.8878 37 1 8.7963 -2.7815 2.0652 38 1 9.5166 -5.1358 2.0651 39 1 9.3549 -6.4729 0.0035 40 1 8.4898 -5.4502 -2.0624 41 1 6.5834 -2.6089 -2.2622 42 1 8.2208 -2.0501 -2.6804 43 1 9.5103 -4.8384 -3.8730 44 1 8.6378 -4.2979 -5.3273 45 1 9.4535 -3.1078 -4.2851 46 1 8.0380 -7.2493 -5.0650 47 1 3.9669 -2.1640 -0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272662791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:56 Heat of formation + Delta-G solvation = 49.013262 kcal Electronic energy + Delta-G solvation = -28846.046515 eV Core-core repulsion = 24994.404118 eV Total energy + Delta-G solvation = -3851.642397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.80083 -39.52724 -38.65322 -35.58552 -34.94781 -33.36238 -32.59176 -31.95734 -31.03116 -29.89059 -28.41812 -26.41636 -25.82340 -25.31668 -24.01016 -22.82118 -22.17316 -20.88814 -20.66782 -19.98462 -18.18654 -17.04042 -16.76338 -16.19095 -15.83166 -15.57741 -15.48053 -15.01628 -14.87599 -14.59763 -14.29681 -14.11227 -13.67186 -13.47484 -13.36754 -13.20689 -12.96843 -12.76733 -12.60156 -12.54105 -12.34360 -12.27513 -12.14638 -11.57712 -11.34220 -10.91365 -10.78252 -10.54328 -10.49700 -10.34186 -10.25799 -10.12712 -10.04517 -9.88049 -9.61147 -9.29081 -8.99596 -8.59807 -8.32299 -8.03900 -6.87980 -5.80319 -3.25314 0.44282 1.00331 1.69732 1.98758 2.76011 3.21276 3.35821 3.43345 3.43661 3.65607 3.94746 4.34294 4.42587 4.45982 4.60906 4.64166 4.77284 4.96389 5.06164 5.24058 5.25210 5.30348 5.30424 5.36234 5.43082 5.54526 5.57968 5.68877 5.75601 5.79798 5.83504 5.88874 6.00659 6.23843 6.30384 6.33557 6.40523 6.43800 6.55122 6.71760 6.73552 6.90715 7.19003 7.32258 7.35880 7.48477 7.65546 7.66810 7.68794 7.78076 8.12792 8.32210 9.16698 9.78880 10.27856 11.24821 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.003730 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.244502 B = 7504.258800 C = 9545.162201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.147 3.853 3 C -0.183 4.183 4 C -0.014 4.014 5 C -0.192 4.192 6 C 0.564 3.436 7 O -0.541 6.541 8 N -0.713 5.713 9 C 0.169 3.831 10 C -0.130 4.130 11 C -0.114 4.114 12 C -0.140 4.140 13 C -0.120 4.120 14 C -0.086 4.086 15 C -0.076 4.076 16 C 0.181 3.819 17 N -0.598 5.598 18 C 0.160 3.840 19 C -0.255 4.255 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.906 5.906 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.145 3.855 28 N -0.486 5.486 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.163 0.837 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.030 0.970 44 H 0.045 0.955 45 H -0.002 1.002 46 H 0.254 0.746 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 11.392 11.893 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.010 3.990 3 C -0.202 4.202 4 C -0.040 4.040 5 C -0.197 4.197 6 C 0.350 3.650 7 O -0.419 6.419 8 N -0.364 5.364 9 C 0.047 3.953 10 C -0.131 4.131 11 C -0.132 4.132 12 C -0.158 4.158 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.079 4.079 16 C 0.054 3.946 17 N -0.320 5.320 18 C 0.015 3.985 19 C -0.384 4.384 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.014 4.014 28 N -0.196 5.196 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.239 0.761 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.180 0.820 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.064 0.936 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.994 11.197 11.772 17.688 hybrid contribution -0.331 -0.404 -0.356 0.632 sum -7.325 10.793 11.416 17.334 Atomic orbital electron populations 1.20793 0.88493 1.03728 1.03519 1.21572 0.97379 0.88354 0.91690 1.21961 0.94513 0.99531 1.04243 1.21714 0.93995 0.97937 0.90349 1.20995 0.94524 0.95590 1.08607 1.17997 0.86670 0.83761 0.76539 1.90765 1.66908 1.33884 1.50347 1.46036 1.07941 1.08117 1.74321 1.20137 0.78888 0.93654 1.02659 1.19622 1.04370 0.94775 0.94306 1.20826 1.00382 0.95226 0.96805 1.20980 1.02316 0.94476 0.98054 1.21297 0.99644 0.99541 0.93309 1.21808 0.94058 0.95102 0.99431 1.21301 0.96099 0.94679 0.95851 1.19918 0.98231 0.91605 0.84895 1.43947 1.13011 1.42484 1.32513 1.20842 0.87010 0.94795 0.95853 1.19182 0.86496 0.99286 1.33473 0.91425 1.24924 0.96483 0.96136 1.01737 1.70033 1.20946 1.19090 1.44981 0.86303 0.82436 0.78576 0.79546 1.21541 1.21774 1.20482 1.23038 0.89386 0.97673 0.91254 1.67573 1.09578 1.29082 1.13323 0.89890 0.90119 0.90472 0.84115 0.83491 0.76093 0.91004 0.90360 0.87011 0.87079 0.86847 0.82005 0.92202 0.93143 0.95157 0.93617 0.98350 0.93624 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.16 36.00 0.37 -0.40 16 2 C 0.15 1.52 6.78 -82.51 -0.56 0.96 16 3 C -0.18 -1.68 9.72 -39.49 -0.38 -2.06 16 4 C -0.01 -0.15 9.72 -38.87 -0.38 -0.53 16 5 C -0.19 -2.39 5.89 -104.82 -0.62 -3.01 16 6 C 0.56 7.95 7.78 -12.33 -0.10 7.85 16 7 O -0.54 -9.08 16.42 5.32 0.09 -8.99 16 8 N -0.71 -9.40 4.98 -62.43 -0.31 -9.71 16 9 C 0.17 2.34 5.15 -5.20 -0.03 2.31 16 10 C -0.13 -1.99 5.25 -104.63 -0.55 -2.54 16 11 C -0.11 -1.62 9.67 -39.58 -0.38 -2.00 16 12 C -0.14 -2.07 10.05 -39.58 -0.40 -2.47 16 13 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 14 C -0.09 -1.73 9.14 -39.58 -0.36 -2.09 16 15 C -0.08 -1.39 5.88 -104.62 -0.62 -2.01 16 16 C 0.18 3.57 5.00 -5.19 -0.03 3.54 16 17 N -0.60 -14.12 1.73 -182.51 -0.32 -14.44 16 18 C 0.16 3.77 8.61 59.84 0.52 4.29 16 19 C -0.25 -6.60 9.17 -15.06 -0.14 -6.74 16 20 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 21 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 22 N -0.91 -24.77 10.78 55.49 0.60 -24.17 16 23 Si 0.90 21.23 29.58 -169.99 -5.03 16.21 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.15 1.78 10.71 -17.13 -0.18 1.59 16 28 N -0.49 -6.14 10.25 -9.14 -0.09 -6.23 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 32 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.15 1.48 7.74 -52.49 -0.41 1.07 16 34 H 0.40 4.95 6.53 -40.82 -0.27 4.69 16 35 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 36 H 0.08 1.15 7.22 -51.93 -0.37 0.78 16 37 H 0.11 1.33 8.00 -52.48 -0.42 0.91 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.16 3.90 5.75 -52.49 -0.30 3.60 16 41 H 0.06 1.15 7.51 -51.93 -0.39 0.76 16 42 H 0.05 0.95 7.30 -51.93 -0.38 0.57 16 43 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 44 H 0.05 1.16 7.21 -51.93 -0.37 0.79 16 45 H 0.00 -0.04 7.89 -51.93 -0.41 -0.45 16 46 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.16 1.74 6.42 -52.49 -0.34 1.40 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -30.41 389.86 -10.01 -40.42 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.51 Total: 6.70 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.32 Total: -5.66 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.12 Total: -54.55 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.41 -10.01 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272662791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.436 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds