Wall clock time and date at job start Tue Mar 31 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38352 * 119.46111 * 2 1 4 4 C 1.38363 * 119.30495 * 179.97438 * 3 2 1 5 5 C 1.40024 * 118.28660 * 0.02562 * 4 3 2 6 6 C 1.47834 * 120.56043 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99959 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00424 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00152 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47098 * 179.97438 * 9 8 6 11 11 C 1.38251 * 120.00303 * 255.37582 * 10 9 8 12 12 C 1.38221 * 120.00161 * 179.97438 * 11 10 9 13 13 C 1.38256 * 119.99708 * 359.78519 * 12 11 10 14 14 C 1.38220 * 119.99960 * 0.49305 * 13 12 11 15 15 C 1.38215 * 119.99616 * 75.39643 * 10 9 8 16 16 C 1.50700 * 120.00279 * 359.97438 * 15 10 9 17 17 N 1.46497 * 109.47049 * 178.00844 * 16 15 10 18 18 C 1.46495 * 120.00177 * 273.77523 * 17 16 15 19 19 C 1.36944 * 120.00013 * 93.77947 * 17 16 15 20 20 H 1.08001 * 120.00011 * 21.81777 * 19 17 16 21 21 C 1.38812 * 120.00053 * 201.81978 * 19 17 16 22 22 N 1.31616 * 119.99849 * 15.23091 * 21 19 17 23 23 Si 1.86801 * 119.99888 * 195.23809 * 21 19 17 24 24 H 1.48501 * 109.47268 * 89.99646 * 23 21 19 25 25 H 1.48499 * 109.46624 * 209.99482 * 23 21 19 26 26 H 1.48494 * 109.47263 * 329.99418 * 23 21 19 27 27 C 1.39522 * 118.88214 * 0.27384 * 5 4 3 28 28 N 1.31701 * 120.56598 * 359.41027 * 27 5 4 29 29 H 1.09002 * 109.46852 * 89.99955 * 1 2 3 30 30 H 1.08997 * 109.47398 * 209.99895 * 1 2 3 31 31 H 1.09000 * 109.46999 * 330.00347 * 1 2 3 32 32 H 1.08004 * 120.34802 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.85711 * 179.97438 * 4 3 2 34 34 H 0.96993 * 119.99534 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.47036 * 60.00068 * 9 8 6 36 36 H 1.08995 * 109.47353 * 300.00082 * 9 8 6 37 37 H 1.08004 * 120.00197 * 359.97438 * 11 10 9 38 38 H 1.07994 * 119.99605 * 180.02562 * 12 11 10 39 39 H 1.07996 * 119.99612 * 180.25954 * 13 12 11 40 40 H 1.07995 * 119.99425 * 179.76278 * 14 13 12 41 41 H 1.09003 * 109.46747 * 298.00395 * 16 15 10 42 42 H 1.08993 * 109.47260 * 58.00514 * 16 15 10 43 43 H 1.08999 * 109.46850 * 93.49983 * 18 17 16 44 44 H 1.09000 * 109.47243 * 213.50239 * 18 17 16 45 45 H 1.08995 * 109.46951 * 333.50646 * 18 17 16 46 46 H 0.97003 * 119.99972 * 180.02562 * 22 21 19 47 47 H 1.07998 * 119.71922 * 179.72417 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7082 -0.0967 0.0016 7 8 6.3601 0.9293 0.0021 8 7 6.3321 -1.2914 0.0011 9 6 7.7958 -1.3534 0.0016 10 6 8.2375 -2.7942 0.0015 11 6 8.7287 -3.3668 1.1600 12 6 9.1333 -4.6885 1.1600 13 6 9.0427 -5.4391 0.0024 14 6 8.5570 -4.8649 -1.1573 15 6 8.1520 -3.5430 -1.1571 16 6 7.6165 -2.9189 -2.4199 17 7 7.6719 -3.8967 -3.5094 18 6 8.8967 -4.0447 -4.2993 19 6 6.5787 -4.6725 -3.7895 20 1 5.5951 -4.3517 -3.4793 21 6 6.7346 -5.8711 -4.4721 22 7 7.9290 -6.4119 -4.5877 23 14 5.2494 -6.7163 -5.2265 24 1 5.0599 -6.2349 -6.6185 25 1 5.4679 -8.1852 -5.2362 26 1 4.0400 -6.4010 -4.4247 27 6 3.4716 -1.2043 -0.0059 28 7 2.1558 -1.1487 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6443 2.1382 0.0004 33 1 4.1275 2.1264 0.0001 34 1 5.8120 -2.1100 0.0003 35 1 8.1802 -0.8560 0.8922 36 1 8.1810 -0.8549 -0.8878 37 1 8.7963 -2.7815 2.0652 38 1 9.5166 -5.1358 2.0651 39 1 9.3549 -6.4729 0.0035 40 1 8.4898 -5.4502 -2.0624 41 1 6.5834 -2.6089 -2.2622 42 1 8.2208 -2.0501 -2.6804 43 1 9.5103 -4.8384 -3.8730 44 1 8.6378 -4.2979 -5.3273 45 1 9.4535 -3.1078 -4.2851 46 1 8.0380 -7.2493 -5.0650 47 1 3.9669 -2.1640 -0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272662791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:55 Heat of formation + Delta-G solvation = 32.875092 kcal Electronic energy + Delta-G solvation = -28846.746319 eV Core-core repulsion = 24994.404118 eV Total energy + Delta-G solvation = -3852.342200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.73163 -40.69849 -39.83245 -37.37175 -36.10752 -34.21020 -33.71582 -33.39891 -32.28076 -31.47535 -29.25207 -28.08578 -27.54598 -26.60909 -24.87371 -23.84695 -23.67916 -22.27916 -21.67677 -21.42476 -19.20939 -18.72163 -17.96596 -17.40059 -16.96366 -16.78400 -16.51110 -16.43726 -15.94202 -15.89255 -15.49455 -15.37984 -15.26274 -14.78429 -14.65665 -14.38200 -14.18489 -13.99998 -13.63006 -13.61451 -13.28870 -13.22017 -13.16891 -13.02244 -12.97664 -12.81283 -12.56229 -12.31534 -12.05856 -11.95471 -11.82343 -11.61316 -11.39150 -10.97956 -10.61721 -10.51229 -10.27102 -9.94728 -9.62021 -9.38825 -8.83055 -7.82251 -5.28471 -0.42648 0.18485 0.41100 0.67652 1.45765 1.48127 1.54985 1.75470 2.14073 2.51208 2.77415 3.03035 3.17807 3.32458 3.65101 3.68199 3.70936 3.78686 3.81364 4.00141 4.08439 4.20778 4.30340 4.38979 4.42425 4.58641 4.62663 4.71733 4.73090 4.76249 4.79942 4.81134 4.82432 5.03308 5.04234 5.07770 5.16036 5.22738 5.27934 5.29952 5.38870 5.59784 5.61632 5.65615 5.69086 5.87093 5.99119 6.27680 6.34782 6.39771 6.83857 7.05271 7.15794 7.85672 8.30617 9.21120 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.003730 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.244502 B = 7504.258800 C = 9545.162201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.139 3.861 3 C -0.172 4.172 4 C -0.021 4.021 5 C -0.207 4.207 6 C 0.567 3.433 7 O -0.571 6.571 8 N -0.708 5.708 9 C 0.173 3.827 10 C -0.118 4.118 11 C -0.103 4.103 12 C -0.129 4.129 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.089 4.089 16 C 0.184 3.816 17 N -0.608 5.608 18 C 0.175 3.825 19 C -0.256 4.256 20 H 0.067 0.933 21 C -0.041 4.041 22 N -0.929 5.929 23 Si 0.956 3.044 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.272 1.272 27 C 0.137 3.863 28 N -0.514 5.514 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.178 0.822 33 H 0.153 0.847 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.009 0.991 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.247 0.753 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 13.136 14.164 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.002 3.998 3 C -0.191 4.191 4 C -0.047 4.047 5 C -0.213 4.213 6 C 0.354 3.646 7 O -0.452 6.452 8 N -0.359 5.359 9 C 0.051 3.949 10 C -0.119 4.119 11 C -0.122 4.122 12 C -0.146 4.146 13 C -0.147 4.147 14 C -0.135 4.135 15 C -0.092 4.092 16 C 0.058 3.942 17 N -0.330 5.330 18 C 0.030 3.970 19 C -0.386 4.386 20 H 0.085 0.915 21 C -0.237 4.237 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.021 4.021 28 N -0.224 5.224 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.195 0.805 33 H 0.171 0.829 34 H 0.244 0.756 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.038 0.962 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.364 12.947 14.062 20.865 hybrid contribution 0.059 -0.874 -0.977 1.312 sum -8.306 12.073 13.086 19.646 Atomic orbital electron populations 1.20909 0.86165 1.04937 1.04345 1.22203 0.99001 0.88142 0.90460 1.22321 0.93804 1.00671 1.02318 1.21939 0.95000 0.97592 0.90190 1.20916 0.93476 0.96489 1.10370 1.18213 0.87316 0.83329 0.75702 1.90742 1.67663 1.34780 1.52031 1.45975 1.07751 1.08241 1.73903 1.20092 0.79240 0.92555 1.03034 1.19658 1.03570 0.95050 0.93598 1.21231 0.98283 0.95250 0.97404 1.21326 1.00755 0.94449 0.98103 1.21393 0.99700 1.00205 0.93373 1.21492 0.97196 0.95768 0.99053 1.20979 0.97535 0.94426 0.96251 1.19944 0.98708 0.90858 0.84694 1.44049 1.12336 1.42729 1.33909 1.20568 0.87097 0.95168 0.94147 1.19383 0.87127 0.99330 1.32773 0.91546 1.25539 0.98500 0.96953 1.02706 1.70185 1.22406 1.19153 1.45803 0.85429 0.80197 0.77217 0.78583 1.21723 1.22276 1.19666 1.23102 0.89612 0.97855 0.91570 1.67609 1.09687 1.30619 1.14441 0.89070 0.90602 0.87622 0.80483 0.82890 0.75582 0.89330 0.91345 0.83418 0.83586 0.86364 0.86593 0.91987 0.92397 0.97306 0.96218 0.95922 0.94338 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.16 71.23 0.72 -0.49 16 2 C 0.14 2.58 6.78 42.57 0.29 2.87 16 3 C -0.17 -2.70 9.72 22.33 0.22 -2.48 16 4 C -0.02 -0.43 9.72 22.73 0.22 -0.21 16 5 C -0.21 -5.01 5.89 -20.00 -0.12 -5.12 16 6 C 0.57 15.55 7.78 86.78 0.68 16.22 16 7 O -0.57 -18.77 16.42 -3.89 -0.06 -18.84 16 8 N -0.71 -17.92 4.98 -469.72 -2.34 -20.26 16 9 C 0.17 4.50 5.15 85.63 0.44 4.94 16 10 C -0.12 -3.40 5.25 -19.87 -0.10 -3.50 16 11 C -0.10 -2.58 9.67 22.27 0.22 -2.36 16 12 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 13 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 14 C -0.12 -4.80 9.14 22.27 0.20 -4.60 16 15 C -0.09 -3.26 5.88 -19.87 -0.12 -3.37 16 16 C 0.18 7.34 5.00 85.63 0.43 7.77 16 17 N -0.61 -29.61 1.73 -731.34 -1.27 -30.88 16 18 C 0.18 8.61 8.61 127.77 1.10 9.71 16 19 C -0.26 -13.62 9.17 84.03 0.77 -12.84 16 20 H 0.07 3.49 7.84 -2.91 -0.02 3.46 16 21 C -0.04 -2.24 5.04 84.86 0.43 -1.81 16 22 N -0.93 -53.03 10.78 21.65 0.23 -52.80 16 23 Si 0.96 44.64 29.58 68.60 2.03 46.67 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C 0.14 3.29 10.71 85.02 0.91 4.20 16 28 N -0.51 -12.48 10.25 -182.82 -1.87 -14.36 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 0.59 8.07 -2.39 -0.02 0.58 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.15 2.86 7.74 -2.91 -0.02 2.84 16 34 H 0.41 9.70 6.53 -92.71 -0.61 9.10 16 35 H 0.09 2.05 7.95 -2.38 -0.02 2.03 16 36 H 0.07 1.94 7.22 -2.39 -0.02 1.93 16 37 H 0.15 2.72 8.00 -2.91 -0.02 2.70 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.12 5.92 5.75 -2.91 -0.02 5.90 16 41 H 0.06 2.40 7.51 -2.39 -0.02 2.39 16 42 H 0.06 2.19 7.30 -2.39 -0.02 2.17 16 43 H 0.01 0.46 6.81 -2.39 -0.02 0.45 16 44 H 0.02 1.03 7.21 -2.39 -0.02 1.01 16 45 H 0.02 0.97 7.89 -2.39 -0.02 0.95 16 46 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 47 H 0.16 3.55 6.42 -2.91 -0.02 3.53 16 Total: -1.00 -68.29 389.86 3.84 -64.45 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.39 Total: 24.38 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 6.73 Total: 1.63 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -5.25 Total: -118.30 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.06 Total: -18.84 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.29 3.84 -64.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272662791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.324 kcal (2) G-P(sol) polarization free energy of solvation -68.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds