Wall clock time and date at job start Tue Mar 31 2020 22:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38640 * 120.46694 * 2 1 4 4 C 1.38586 * 118.48383 * 180.02562 * 3 2 1 5 5 C 1.38596 * 119.35399 * 0.02562 * 4 3 2 6 6 N 1.31494 * 120.90077 * 359.73974 * 5 4 3 7 7 C 1.32742 * 121.64443 * 0.52660 * 6 5 4 8 8 C 1.48175 * 119.72597 * 179.74990 * 7 6 5 9 9 O 1.21512 * 120.00098 * 173.93701 * 8 7 6 10 10 N 1.34775 * 119.99528 * 353.94244 * 8 7 6 11 11 C 1.46497 * 119.99540 * 179.72114 * 10 8 7 12 12 C 1.50704 * 109.47203 * 180.27615 * 11 10 8 13 13 C 1.38235 * 119.99933 * 269.72710 * 12 11 10 14 14 C 1.38232 * 119.99827 * 179.80471 * 13 12 11 15 15 C 1.38243 * 120.00043 * 0.42684 * 14 13 12 16 16 C 1.50700 * 119.99865 * 179.78907 * 15 14 13 17 17 H 1.08997 * 109.46790 * 160.02019 * 16 15 14 18 18 C 1.52998 * 109.46771 * 280.01572 * 16 15 14 19 19 N 1.46503 * 109.47304 * 40.01895 * 16 15 14 20 20 C 1.36940 * 119.99700 * 155.00157 * 19 16 15 21 21 H 1.08000 * 119.99833 * 359.97438 * 20 19 16 22 22 C 1.38812 * 119.99388 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00606 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99542 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47134 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46631 * 119.99962 * 24 22 20 27 27 H 1.48494 * 109.47072 * 240.00132 * 24 22 20 28 28 C 1.38234 * 119.99636 * 359.80368 * 15 14 13 29 29 C 1.38228 * 120.00469 * 0.02562 * 28 15 14 30 30 H 1.09003 * 109.47338 * 263.26434 * 1 2 3 31 31 H 1.09008 * 109.47317 * 23.26271 * 1 2 3 32 32 H 1.08999 * 109.46969 * 143.25935 * 1 2 3 33 33 H 1.07993 * 120.75190 * 0.04394 * 3 2 1 34 34 H 1.07997 * 120.31991 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.55099 * 179.97438 * 5 4 3 36 36 H 0.96999 * 120.00077 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47671 * 300.27862 * 11 10 8 38 38 H 1.08999 * 109.47346 * 60.27726 * 11 10 8 39 39 H 1.07995 * 119.99836 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.00249 * 180.20602 * 14 13 12 41 41 H 1.09006 * 109.47079 * 179.97438 * 18 16 15 42 42 H 1.09001 * 109.47421 * 300.00213 * 18 16 15 43 43 H 1.08997 * 109.47099 * 60.00636 * 18 16 15 44 44 H 0.96995 * 119.99809 * 335.00086 * 19 16 15 45 45 H 0.96996 * 120.00635 * 179.97438 * 23 22 20 46 46 H 1.08007 * 119.99725 * 179.97438 * 28 15 14 47 47 H 1.07998 * 120.00368 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1950 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0838 -0.0016 6 7 3.5407 -1.2022 0.0030 7 6 2.2133 -1.2003 -0.0015 8 6 1.4767 -2.4860 -0.0016 9 8 0.2663 -2.4928 0.1054 10 7 2.1493 -3.6479 -0.1203 11 6 1.4217 -4.9193 -0.1143 12 6 2.3989 -6.0581 -0.2532 13 6 2.7372 -6.5293 -1.5080 14 6 3.6366 -7.5712 -1.6356 15 6 4.1911 -8.1477 -0.5081 16 6 5.1681 -9.2867 -0.6471 17 1 5.7549 -9.3756 0.2671 18 6 4.4021 -10.5887 -0.8900 19 7 6.0623 -9.0278 -1.7783 20 6 7.3062 -9.5995 -1.8125 21 1 7.6281 -10.2409 -1.0053 22 6 8.1533 -9.3546 -2.8846 23 7 7.7612 -8.5726 -3.8679 24 14 9.8504 -10.1339 -2.9309 25 1 10.0476 -10.9632 -1.7150 26 1 9.9689 -10.9903 -4.1382 27 1 10.8833 -9.0681 -2.9766 28 6 3.8491 -7.6796 0.7468 29 6 2.9524 -6.6354 0.8743 30 1 -0.3634 -0.1205 1.0206 31 1 -0.3634 0.9442 -0.4059 32 1 -0.3633 -0.8235 -0.6147 33 1 1.6900 2.1415 0.0007 34 1 4.1721 2.0598 -0.0010 35 1 5.3114 -0.1249 -0.0025 36 1 3.1156 -3.6424 -0.2053 37 1 0.8759 -5.0213 0.8238 38 1 0.7190 -4.9398 -0.9473 39 1 2.3008 -6.0817 -2.3886 40 1 3.9035 -7.9372 -2.6160 41 1 5.1088 -11.4126 -0.9910 42 1 3.7368 -10.7813 -0.0483 43 1 3.8153 -10.4999 -1.8042 44 1 5.7733 -8.4515 -2.5029 45 1 8.3532 -8.4011 -4.6169 46 1 4.2820 -8.1303 1.6277 47 1 2.6849 -6.2700 1.8547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272690496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:28 Heat of formation + Delta-G solvation = 33.650487 kcal Electronic energy + Delta-G solvation = -27621.429033 eV Core-core repulsion = 23769.120457 eV Total energy + Delta-G solvation = -3852.308577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02765 -39.56511 -38.84837 -36.03128 -34.76412 -33.68214 -32.56017 -32.16781 -30.69573 -30.26829 -28.40991 -27.74947 -26.13851 -24.58879 -23.82915 -22.64636 -22.44301 -21.61223 -20.95368 -19.71483 -18.42717 -17.42797 -17.10395 -16.21104 -15.89756 -15.71377 -15.58759 -15.18862 -14.99680 -14.54156 -14.38533 -14.02072 -13.72987 -13.49204 -13.44636 -13.33919 -13.09716 -12.99345 -12.90419 -12.64012 -12.41945 -12.30176 -12.23821 -11.90146 -11.62735 -11.14676 -10.90060 -10.85581 -10.60651 -10.32777 -10.26899 -10.17099 -9.97692 -9.72461 -9.66842 -9.43660 -9.06979 -8.98399 -8.61337 -8.29919 -6.99755 -5.78904 -3.07604 0.34041 0.84664 1.49028 1.71625 2.52679 3.04332 3.42127 3.47781 3.49939 3.54873 3.88110 4.12029 4.40358 4.44923 4.57282 4.57867 4.59881 4.74510 5.00770 5.01936 5.20407 5.23963 5.32571 5.34221 5.41182 5.48498 5.56078 5.59026 5.66342 5.73718 5.78845 5.80732 5.97336 5.98221 6.03622 6.23752 6.27093 6.31977 6.35956 6.37320 6.51490 6.63433 6.73908 6.79395 6.96195 7.17584 7.24767 7.30666 7.54655 7.68873 8.01790 8.39360 9.50845 10.06605 10.41890 11.43803 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.002241 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.347152 B =12493.867955 C =14041.964541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.146 4.146 5 C 0.092 3.908 6 N -0.452 5.452 7 C 0.071 3.929 8 C 0.569 3.431 9 O -0.533 6.533 10 N -0.703 5.703 11 C 0.166 3.834 12 C -0.131 4.131 13 C -0.098 4.098 14 C -0.106 4.106 15 C -0.053 4.053 16 C 0.204 3.796 17 H 0.056 0.944 18 C -0.159 4.159 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 C -0.101 4.101 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.057 0.943 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 18.018 9.517 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.114 4.114 4 C -0.166 4.166 5 C -0.068 4.068 6 N -0.163 5.163 7 C -0.067 4.067 8 C 0.354 3.646 9 O -0.411 6.411 10 N -0.354 5.354 11 C 0.044 3.956 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.054 4.054 16 C 0.094 3.906 17 H 0.074 0.926 18 C -0.220 4.220 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.140 4.140 29 C -0.119 4.119 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.251 0.749 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.311 17.054 9.621 24.253 hybrid contribution 1.182 0.688 -0.425 1.433 sum -13.128 17.742 9.196 23.910 Atomic orbital electron populations 1.21063 0.88957 1.03368 1.03994 1.20959 0.98439 0.92378 0.95929 1.21569 0.94189 0.98099 0.97586 1.22401 0.95287 0.99932 0.98933 1.22829 1.00667 0.87211 0.96114 1.67563 1.07011 1.32126 1.09599 1.21008 0.89936 0.93574 1.02146 1.17878 0.86531 0.83119 0.77028 1.90728 1.13109 1.86792 1.50438 1.46036 1.12113 1.04902 1.72325 1.20202 0.92784 0.79936 1.02717 1.19624 1.00927 0.98675 0.93915 1.21010 0.97644 0.96650 0.96330 1.21079 0.96004 0.96013 0.99307 1.20527 0.95489 0.96595 0.92789 1.19252 0.88933 0.89505 0.92925 0.92623 1.22419 0.99861 0.99667 1.00016 1.42531 1.14217 1.58145 1.21479 1.19288 0.91043 1.22579 1.04028 0.91020 1.24740 0.98671 1.00355 0.97147 1.69663 1.36593 1.41058 1.10696 0.86120 0.84405 0.78413 0.77276 1.20537 1.21883 1.21870 1.21006 0.98542 0.97311 0.97138 1.20916 0.97052 0.96390 0.97572 0.90354 0.92213 0.88211 0.84150 0.84161 0.81865 0.74907 0.90672 0.90603 0.86345 0.85388 0.92399 0.94303 0.93314 0.77993 0.93526 0.86131 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.74 36.01 0.31 -0.72 16 2 C -0.07 -0.72 5.93 -104.09 -0.62 -1.34 16 3 C -0.09 -0.65 9.83 -39.30 -0.39 -1.03 16 4 C -0.15 -0.98 10.11 -39.32 -0.40 -1.37 16 5 C 0.09 0.79 11.18 -17.56 -0.20 0.59 16 6 N -0.45 -5.16 9.56 -9.80 -0.09 -5.25 16 7 C 0.07 0.84 6.75 -83.01 -0.56 0.28 16 8 C 0.57 7.31 7.75 -12.18 -0.09 7.22 16 9 O -0.53 -7.56 13.31 5.36 0.07 -7.49 16 10 N -0.70 -8.55 5.54 -62.32 -0.35 -8.89 16 11 C 0.17 1.95 5.80 -5.19 -0.03 1.92 16 12 C -0.13 -1.71 5.25 -104.62 -0.55 -2.26 16 13 C -0.10 -1.41 9.70 -39.58 -0.38 -1.79 16 14 C -0.11 -1.79 9.06 -39.58 -0.36 -2.15 16 15 C -0.05 -0.92 4.95 -104.62 -0.52 -1.44 16 16 C 0.20 4.04 3.09 -69.08 -0.21 3.83 16 17 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 18 C -0.16 -2.88 9.47 37.16 0.35 -2.52 16 19 N -0.72 -17.85 5.07 -54.55 -0.28 -18.13 16 20 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 24 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 C -0.12 -1.81 9.67 -39.59 -0.38 -2.19 16 29 C -0.10 -1.33 9.70 -39.58 -0.38 -1.71 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.39 8.05 -51.92 -0.42 -0.03 16 32 H 0.10 1.07 5.85 -51.93 -0.30 0.77 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.41 5.12 7.81 -40.82 -0.32 4.80 16 37 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.13 2.33 6.92 -52.49 -0.36 1.97 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.38 10.04 6.07 -40.82 -0.25 9.79 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.12 1.60 8.04 -52.48 -0.42 1.18 16 47 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -32.12 395.66 -10.31 -42.43 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.68 Total: 13.17 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -4.65 Total: -11.85 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.01 Total: -59.43 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.12 -10.31 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.077 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds