Wall clock time and date at job start Tue Mar 31 2020 22:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38640 * 120.46694 * 2 1 4 4 C 1.38586 * 118.48383 * 180.02562 * 3 2 1 5 5 C 1.38596 * 119.35399 * 0.02562 * 4 3 2 6 6 N 1.31494 * 120.90077 * 359.73974 * 5 4 3 7 7 C 1.32742 * 121.64443 * 0.52660 * 6 5 4 8 8 C 1.48175 * 119.72597 * 179.74990 * 7 6 5 9 9 O 1.21512 * 120.00098 * 173.93701 * 8 7 6 10 10 N 1.34775 * 119.99528 * 353.94244 * 8 7 6 11 11 C 1.46497 * 119.99540 * 179.72114 * 10 8 7 12 12 C 1.50704 * 109.47203 * 180.27615 * 11 10 8 13 13 C 1.38235 * 119.99933 * 269.72710 * 12 11 10 14 14 C 1.38232 * 119.99827 * 179.80471 * 13 12 11 15 15 C 1.38243 * 120.00043 * 0.42684 * 14 13 12 16 16 C 1.50700 * 119.99865 * 179.78907 * 15 14 13 17 17 H 1.08997 * 109.46790 * 160.02019 * 16 15 14 18 18 C 1.52998 * 109.46771 * 280.01572 * 16 15 14 19 19 N 1.46503 * 109.47304 * 40.01895 * 16 15 14 20 20 C 1.36940 * 119.99700 * 155.00157 * 19 16 15 21 21 H 1.08000 * 119.99833 * 359.97438 * 20 19 16 22 22 C 1.38812 * 119.99388 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00606 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99542 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47134 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46631 * 119.99962 * 24 22 20 27 27 H 1.48494 * 109.47072 * 240.00132 * 24 22 20 28 28 C 1.38234 * 119.99636 * 359.80368 * 15 14 13 29 29 C 1.38228 * 120.00469 * 0.02562 * 28 15 14 30 30 H 1.09003 * 109.47338 * 263.26434 * 1 2 3 31 31 H 1.09008 * 109.47317 * 23.26271 * 1 2 3 32 32 H 1.08999 * 109.46969 * 143.25935 * 1 2 3 33 33 H 1.07993 * 120.75190 * 0.04394 * 3 2 1 34 34 H 1.07997 * 120.31991 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.55099 * 179.97438 * 5 4 3 36 36 H 0.96999 * 120.00077 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47671 * 300.27862 * 11 10 8 38 38 H 1.08999 * 109.47346 * 60.27726 * 11 10 8 39 39 H 1.07995 * 119.99836 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.00249 * 180.20602 * 14 13 12 41 41 H 1.09006 * 109.47079 * 179.97438 * 18 16 15 42 42 H 1.09001 * 109.47421 * 300.00213 * 18 16 15 43 43 H 1.08997 * 109.47099 * 60.00636 * 18 16 15 44 44 H 0.96995 * 119.99809 * 335.00086 * 19 16 15 45 45 H 0.96996 * 120.00635 * 179.97438 * 23 22 20 46 46 H 1.08007 * 119.99725 * 179.97438 * 28 15 14 47 47 H 1.07998 * 120.00368 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1950 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0838 -0.0016 6 7 3.5407 -1.2022 0.0030 7 6 2.2133 -1.2003 -0.0015 8 6 1.4767 -2.4860 -0.0016 9 8 0.2663 -2.4928 0.1054 10 7 2.1493 -3.6479 -0.1203 11 6 1.4217 -4.9193 -0.1143 12 6 2.3989 -6.0581 -0.2532 13 6 2.7372 -6.5293 -1.5080 14 6 3.6366 -7.5712 -1.6356 15 6 4.1911 -8.1477 -0.5081 16 6 5.1681 -9.2867 -0.6471 17 1 5.7549 -9.3756 0.2671 18 6 4.4021 -10.5887 -0.8900 19 7 6.0623 -9.0278 -1.7783 20 6 7.3062 -9.5995 -1.8125 21 1 7.6281 -10.2409 -1.0053 22 6 8.1533 -9.3546 -2.8846 23 7 7.7612 -8.5726 -3.8679 24 14 9.8504 -10.1339 -2.9309 25 1 10.0476 -10.9632 -1.7150 26 1 9.9689 -10.9903 -4.1382 27 1 10.8833 -9.0681 -2.9766 28 6 3.8491 -7.6796 0.7468 29 6 2.9524 -6.6354 0.8743 30 1 -0.3634 -0.1205 1.0206 31 1 -0.3634 0.9442 -0.4059 32 1 -0.3633 -0.8235 -0.6147 33 1 1.6900 2.1415 0.0007 34 1 4.1721 2.0598 -0.0010 35 1 5.3114 -0.1249 -0.0025 36 1 3.1156 -3.6424 -0.2053 37 1 0.8759 -5.0213 0.8238 38 1 0.7190 -4.9398 -0.9473 39 1 2.3008 -6.0817 -2.3886 40 1 3.9035 -7.9372 -2.6160 41 1 5.1088 -11.4126 -0.9910 42 1 3.7368 -10.7813 -0.0483 43 1 3.8153 -10.4999 -1.8042 44 1 5.7733 -8.4515 -2.5029 45 1 8.3532 -8.4011 -4.6169 46 1 4.2820 -8.1303 1.6277 47 1 2.6849 -6.2700 1.8547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272690496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:27 Heat of formation + Delta-G solvation = 14.413841 kcal Electronic energy + Delta-G solvation = -27622.263197 eV Core-core repulsion = 23769.120457 eV Total energy + Delta-G solvation = -3853.142740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78995 -40.67156 -39.82556 -37.46569 -35.96458 -34.53140 -34.03258 -33.09406 -31.92781 -31.61717 -30.06383 -28.54207 -27.17420 -25.92715 -25.22062 -23.82093 -23.26392 -22.82773 -21.84071 -21.10800 -19.41715 -19.23087 -17.87955 -17.30323 -16.94562 -16.64589 -16.62207 -16.38699 -16.08204 -15.92394 -15.53946 -15.15512 -14.99822 -14.79016 -14.55385 -14.40562 -14.24857 -14.03874 -13.77490 -13.69833 -13.52580 -13.45425 -13.25050 -13.01556 -12.91184 -12.85922 -12.70726 -12.43638 -12.09257 -12.01397 -11.60727 -11.53638 -11.14941 -11.01371 -10.78240 -10.46764 -10.28073 -9.88495 -9.79418 -9.54994 -9.02346 -7.93825 -5.22312 -0.35228 0.23340 0.29982 0.52763 1.47478 1.47958 1.57953 1.68954 2.12091 2.56205 2.83367 2.89948 3.20018 3.40616 3.64132 3.77053 3.85855 3.86879 3.96435 3.98593 4.03978 4.04864 4.14473 4.34923 4.48169 4.53636 4.55900 4.58682 4.66768 4.77162 4.78590 4.78899 4.80416 5.00846 5.05999 5.09508 5.11531 5.15088 5.21708 5.26337 5.41423 5.43320 5.51036 5.55130 5.62521 5.68603 5.83180 6.09119 6.28448 6.35914 6.78764 7.09078 7.34497 8.09049 8.33297 9.29987 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.002241 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.347152 B =12493.867955 C =14041.964541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.131 4.131 5 C 0.077 3.923 6 N -0.480 5.480 7 C 0.040 3.960 8 C 0.565 3.435 9 O -0.554 6.554 10 N -0.702 5.702 11 C 0.171 3.829 12 C -0.117 4.117 13 C -0.099 4.099 14 C -0.123 4.123 15 C -0.073 4.073 16 C 0.199 3.801 17 H 0.055 0.945 18 C -0.149 4.149 19 N -0.735 5.735 20 C -0.237 4.237 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.295 1.295 28 C -0.121 4.121 29 C -0.093 4.093 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.413 0.587 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.139 0.861 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.300 19.950 11.394 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.150 4.150 5 C -0.083 4.083 6 N -0.191 5.191 7 C -0.097 4.097 8 C 0.352 3.648 9 O -0.433 6.433 10 N -0.353 5.353 11 C 0.048 3.952 12 C -0.118 4.118 13 C -0.117 4.117 14 C -0.142 4.142 15 C -0.074 4.074 16 C 0.091 3.909 17 H 0.073 0.927 18 C -0.209 4.209 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.139 4.139 29 C -0.111 4.111 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.191 0.809 34 H 0.196 0.804 35 H 0.200 0.800 36 H 0.249 0.751 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.157 0.843 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.611 18.956 11.545 26.573 hybrid contribution 1.194 0.202 -0.936 1.531 sum -13.417 19.157 10.609 25.682 Atomic orbital electron populations 1.20987 0.88709 1.03768 1.03414 1.21181 0.98853 0.92786 0.96016 1.21984 0.94614 0.98383 0.96210 1.22814 0.95352 1.00539 0.96300 1.23339 1.01703 0.87448 0.95828 1.67493 1.07064 1.33845 1.10709 1.20926 0.90411 0.93542 1.04776 1.18181 0.86442 0.83740 0.76467 1.90712 1.13886 1.87204 1.51493 1.46013 1.11979 1.04963 1.72333 1.20176 0.92316 0.79312 1.03355 1.19753 1.00258 0.98406 0.93353 1.21121 0.97045 0.95933 0.97636 1.20963 0.97482 0.97422 0.98307 1.20336 0.96244 0.96763 0.94080 1.19418 0.89031 0.91390 0.91046 0.92664 1.22258 0.99656 0.98003 1.00949 1.42734 1.14296 1.57851 1.22717 1.19676 0.91907 1.21610 1.03641 0.90442 1.25542 1.02444 1.01685 0.97247 1.69823 1.37762 1.43106 1.11418 0.85093 0.79942 0.77412 0.77455 1.18926 1.22227 1.22185 1.21191 0.98637 0.97524 0.96568 1.21213 0.95783 0.95287 0.98836 0.90739 0.89636 0.90561 0.80882 0.80436 0.79960 0.75074 0.89667 0.90445 0.85171 0.87772 0.93780 0.91164 0.94131 0.79257 0.94117 0.84318 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 8.74 71.24 0.62 -1.26 16 2 C -0.09 -1.56 5.93 -19.52 -0.12 -1.68 16 3 C -0.09 -1.00 9.83 22.45 0.22 -0.78 16 4 C -0.13 -1.32 10.11 22.44 0.23 -1.10 16 5 C 0.08 1.19 11.18 84.83 0.95 2.13 16 6 N -0.48 -10.67 9.56 -184.91 -1.77 -12.44 16 7 C 0.04 0.93 6.75 41.90 0.28 1.21 16 8 C 0.57 14.59 7.75 86.88 0.67 15.26 16 9 O -0.55 -15.88 13.31 -3.75 -0.05 -15.93 16 10 N -0.70 -16.86 5.54 -469.39 -2.60 -19.46 16 11 C 0.17 3.82 5.80 85.63 0.50 4.31 16 12 C -0.12 -2.92 5.25 -19.86 -0.10 -3.02 16 13 C -0.10 -2.85 9.70 22.27 0.22 -2.63 16 14 C -0.12 -4.30 9.06 22.27 0.20 -4.10 16 15 C -0.07 -2.54 4.95 -19.86 -0.10 -2.64 16 16 C 0.20 7.97 3.09 44.24 0.14 8.10 16 17 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 18 C -0.15 -5.35 9.47 71.98 0.68 -4.67 16 19 N -0.73 -37.36 5.07 -326.50 -1.66 -39.02 16 20 C -0.24 -13.15 9.93 84.03 0.83 -12.32 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 23 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 24 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 25 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 C -0.12 -3.41 9.67 22.27 0.22 -3.19 16 29 C -0.09 -2.25 9.70 22.27 0.22 -2.03 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 0.93 8.05 -2.38 -0.02 0.91 16 32 H 0.08 1.66 5.85 -2.39 -0.01 1.65 16 33 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 34 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 35 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.41 10.15 7.81 -92.71 -0.72 9.43 16 37 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 38 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 39 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 40 H 0.10 4.07 6.92 -2.91 -0.02 4.05 16 41 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.37 20.42 6.07 -92.71 -0.56 19.86 16 45 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.14 3.35 8.04 -2.91 -0.02 3.33 16 47 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -71.68 395.66 2.07 -69.61 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -0.29 Total: 40.74 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 6.12 Total: -12.37 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -5.74 Total: -130.46 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.05 Total: -15.93 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.68 2.07 -69.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.021 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds