Wall clock time and date at job start Tue Mar 31 2020 22:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.45982 * 2 1 4 4 C 1.36942 * 120.00045 * 59.99424 * 3 2 1 5 5 H 1.07994 * 119.99791 * 0.02562 * 4 3 2 6 6 C 1.38811 * 119.99875 * 180.02562 * 4 3 2 7 7 N 1.31622 * 120.00044 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99908 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47002 * 269.99938 * 8 6 4 10 10 H 1.48501 * 109.46632 * 29.99983 * 8 6 4 11 11 H 1.48496 * 109.46917 * 149.99599 * 8 6 4 12 12 C 1.53045 * 109.46195 * 119.96728 * 2 1 3 13 13 C 1.53158 * 109.32981 * 181.38955 * 12 2 1 14 14 N 1.46932 * 108.76441 * 305.35643 * 13 12 2 15 15 C 1.34780 * 120.62884 * 233.62819 * 14 13 12 16 16 O 1.21565 * 119.99670 * 174.40573 * 15 14 13 17 17 C 1.47762 * 120.00078 * 354.40963 * 15 14 13 18 18 C 1.40631 * 119.80950 * 324.35319 * 17 15 14 19 19 C 1.35695 * 120.92310 * 179.77230 * 18 17 15 20 20 C 1.40757 * 120.11508 * 0.47735 * 19 18 17 21 21 N 1.33648 * 120.83106 * 179.78971 * 20 19 18 22 22 C 1.31121 * 121.38890 * 180.02562 * 21 20 19 23 23 C 1.39309 * 121.77336 * 359.97438 * 22 21 20 24 24 C 1.36575 * 119.90431 * 0.02562 * 23 22 21 25 25 C 1.40889 * 118.15841 * 359.97438 * 24 23 22 26 26 C 1.38558 * 119.80378 * 144.62158 * 17 15 14 27 27 C 1.46924 * 118.73942 * 53.61143 * 14 13 12 28 28 C 1.53042 * 109.46324 * 240.02553 * 2 1 3 29 29 H 1.09003 * 109.47112 * 60.00096 * 1 2 3 30 30 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47345 * 300.00005 * 1 2 3 32 32 H 0.96998 * 120.00110 * 240.00432 * 3 2 1 33 33 H 0.96999 * 120.00032 * 0.02562 * 7 6 4 34 34 H 1.09001 * 109.49874 * 301.32768 * 12 2 1 35 35 H 1.08998 * 109.49110 * 61.41993 * 12 2 1 36 36 H 1.09002 * 109.59152 * 185.57728 * 13 12 2 37 37 H 1.08996 * 109.71157 * 65.20768 * 13 12 2 38 38 H 1.07998 * 119.53135 * 359.97438 * 18 17 15 39 39 H 1.08001 * 119.94001 * 180.25617 * 19 18 17 40 40 H 1.08006 * 119.11029 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.04766 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.92340 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.29698 * 359.95859 * 26 17 15 44 44 H 1.09002 * 109.58687 * 186.59839 * 27 14 13 45 45 H 1.09000 * 109.70125 * 66.24599 * 27 14 13 46 46 H 1.08994 * 109.49171 * 298.58193 * 28 2 1 47 47 H 1.08999 * 109.49322 * 58.63986 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6870 2.2245 1.0270 5 1 1.0664 1.8711 1.8371 6 6 2.1490 3.5335 1.0267 7 7 2.9057 3.9641 0.0396 8 14 1.6980 4.6835 2.4280 9 1 0.4347 5.3917 2.1000 10 1 1.5153 3.8970 3.6744 11 1 2.7854 5.6756 2.6236 12 6 2.0399 -0.7208 1.2501 13 6 3.5711 -0.6887 1.2647 14 7 4.0676 -1.2492 0.0005 15 6 4.9611 -2.2583 0.0007 16 8 5.2874 -2.7814 -1.0470 17 6 5.5439 -2.7288 1.2744 18 6 5.8163 -1.8073 2.3012 19 6 6.3471 -2.2153 3.4815 20 6 6.6430 -3.5754 3.6903 21 7 7.1699 -3.9923 4.8456 22 6 7.4502 -5.2565 5.0516 23 6 7.2141 -6.2278 4.0812 24 6 6.6772 -5.8710 2.8772 25 6 6.3773 -4.5117 2.6596 26 6 5.8239 -4.0747 1.4480 27 6 3.5714 -0.6890 -1.2639 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.5756 1.6987 -0.7275 33 1 3.1402 3.3668 -0.6879 34 1 1.6574 -0.2207 2.1399 35 1 1.6976 -1.7556 1.2383 36 1 3.9412 -1.2847 2.0989 37 1 3.9163 0.3399 1.3688 38 1 5.5970 -0.7608 2.1492 39 1 6.5461 -1.4945 4.2608 40 1 7.8748 -5.5529 5.9994 41 1 7.4561 -7.2614 4.2805 42 1 6.4878 -6.6104 2.1130 43 1 5.6175 -4.7806 0.6572 44 1 3.9418 -1.2850 -2.0980 45 1 3.9145 0.3402 -1.3695 46 1 1.6976 -1.7557 -1.2381 47 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274368628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:28 Heat of formation + Delta-G solvation = 26.673728 kcal Electronic energy + Delta-G solvation = -29591.918061 eV Core-core repulsion = 25739.306949 eV Total energy + Delta-G solvation = -3852.611112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -42.15750 -41.23273 -39.44492 -37.84668 -36.28419 -34.58616 -34.39448 -32.68508 -31.39600 -31.19762 -30.54483 -29.19849 -26.25541 -25.58840 -25.21317 -24.18859 -23.94237 -23.14700 -21.54836 -20.21326 -19.48891 -18.95059 -18.38445 -17.94727 -17.35550 -16.82180 -16.53310 -16.30752 -15.94606 -15.63089 -15.43009 -15.34958 -15.20889 -15.07959 -14.98959 -14.40665 -14.37216 -14.16127 -14.00636 -13.59893 -13.26773 -13.19054 -12.82986 -12.78287 -12.73311 -12.61563 -12.52339 -12.21481 -12.16134 -11.87963 -11.78351 -11.58132 -11.47169 -11.07074 -10.95368 -10.80856 -10.52149 -9.87854 -9.72023 -9.36665 -8.98299 -8.23997 -5.18041 -0.80546 -0.38240 0.85623 1.33189 1.61543 1.70257 1.82641 1.83574 2.09243 2.76716 3.02479 3.20358 3.33773 3.51598 3.51899 3.66454 3.70549 3.84677 3.85575 3.96117 3.96752 4.02594 4.07532 4.19501 4.26054 4.32735 4.49911 4.53884 4.57493 4.68233 4.72291 4.77337 4.83661 4.90303 4.92064 4.95325 4.98683 4.99870 5.06730 5.15380 5.19449 5.24666 5.27731 5.44355 5.48518 5.57224 5.73040 5.76971 6.29877 6.62552 6.87953 6.94598 7.21286 8.12318 8.24986 9.27633 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.003187 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.279061 B = 8783.888623 C = 9937.558337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.193 3.807 3 N -0.735 5.735 4 C -0.297 4.297 5 H 0.068 0.932 6 C -0.106 4.106 7 N -0.984 5.984 8 Si 1.118 2.882 9 H -0.293 1.293 10 H -0.272 1.272 11 H -0.301 1.301 12 C -0.128 4.128 13 C 0.113 3.887 14 N -0.591 5.591 15 C 0.557 3.443 16 O -0.577 6.577 17 C -0.143 4.143 18 C -0.082 4.082 19 C -0.103 4.103 20 C 0.125 3.875 21 N -0.510 5.510 22 C 0.139 3.861 23 C -0.169 4.169 24 C -0.051 4.051 25 C -0.126 4.126 26 C -0.027 4.027 27 C 0.119 3.881 28 C -0.120 4.120 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.357 0.643 33 H 0.243 0.757 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.193 0.807 41 H 0.180 0.820 42 H 0.169 0.831 43 H 0.150 0.850 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -23.379 7.988 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.104 3.896 3 N -0.378 5.378 4 C -0.429 4.429 5 H 0.086 0.914 6 C -0.297 4.297 7 N -0.634 5.634 8 Si 0.946 3.054 9 H -0.221 1.221 10 H -0.197 1.197 11 H -0.228 1.228 12 C -0.168 4.168 13 C -0.009 4.009 14 N -0.321 5.321 15 C 0.347 3.653 16 O -0.459 6.459 17 C -0.146 4.146 18 C -0.102 4.102 19 C -0.122 4.122 20 C 0.004 3.996 21 N -0.219 5.219 22 C -0.033 4.033 23 C -0.188 4.188 24 C -0.077 4.077 25 C -0.128 4.128 26 C -0.046 4.046 27 C -0.004 4.004 28 C -0.159 4.159 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.190 0.810 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.210 0.790 41 H 0.197 0.803 42 H 0.187 0.813 43 H 0.168 0.832 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.896 -21.455 8.826 23.937 hybrid contribution -0.279 -1.142 -1.771 2.125 sum 5.617 -22.597 7.055 24.330 Atomic orbital electron populations 1.22114 0.96536 1.00662 1.00890 1.19772 0.92743 0.83863 0.93244 1.42683 1.61085 1.08190 1.25797 1.20165 1.27077 0.94302 1.01384 0.91392 1.26762 0.99827 0.98170 1.04983 1.70961 1.41767 1.38228 1.12397 0.82707 0.75170 0.74355 0.73195 1.22100 1.19696 1.22846 1.22220 0.94651 1.00045 0.99917 1.22078 0.95175 0.98667 0.84961 1.48006 1.41790 1.33991 1.08325 1.18585 0.78679 0.79068 0.88923 1.90719 1.62949 1.58106 1.34078 1.19798 1.05097 0.95374 0.94306 1.21162 0.96607 1.00182 0.92226 1.20818 0.99149 0.94351 0.97862 1.19168 0.96094 0.94269 0.90044 1.68115 1.13137 1.19807 1.20845 1.23767 0.91830 0.87277 1.00445 1.22343 0.99839 1.03146 0.93499 1.21945 0.93401 0.93584 0.98723 1.18963 1.02898 0.96068 0.94919 1.21475 0.92899 0.94268 0.95971 1.21488 0.94790 0.98040 0.86035 1.22025 0.94098 1.01366 0.98394 0.94115 0.91434 0.94058 0.80974 0.94641 0.91599 0.90999 0.87952 0.92251 0.84414 0.83409 0.79007 0.80261 0.81325 0.83235 0.89357 0.92815 0.89766 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 8.44 71.98 0.61 -4.19 16 2 C 0.19 6.85 0.74 3.63 0.00 6.85 16 3 N -0.74 -33.17 4.14 -303.21 -1.25 -34.43 16 4 C -0.30 -15.17 8.68 84.03 0.73 -14.44 16 5 H 0.07 3.40 6.70 -2.91 -0.02 3.38 16 6 C -0.11 -5.88 5.50 84.86 0.47 -5.41 16 7 N -0.98 -59.76 13.70 21.65 0.30 -59.47 16 8 Si 1.12 50.88 29.92 68.60 2.05 52.94 16 9 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 C -0.13 -4.16 4.70 30.66 0.14 -4.01 16 13 C 0.11 3.64 4.50 86.35 0.39 4.03 16 14 N -0.59 -19.25 2.97 -822.47 -2.44 -21.69 16 15 C 0.56 18.29 7.37 86.76 0.64 18.93 16 16 O -0.58 -21.73 16.22 -3.92 -0.06 -21.79 16 17 C -0.14 -3.97 5.28 -20.10 -0.11 -4.08 16 18 C -0.08 -2.16 7.23 22.26 0.16 -1.99 16 19 C -0.10 -2.56 9.95 22.30 0.22 -2.33 16 20 C 0.13 3.02 6.61 40.35 0.27 3.29 16 21 N -0.51 -11.24 10.33 -188.46 -1.95 -13.19 16 22 C 0.14 1.90 11.14 85.06 0.95 2.85 16 23 C -0.17 -1.69 10.03 22.14 0.22 -1.47 16 24 C -0.05 -0.69 9.89 22.53 0.22 -0.47 16 25 C -0.13 -2.68 5.74 -21.29 -0.12 -2.80 16 26 C -0.03 -0.62 9.35 22.82 0.21 -0.41 16 27 C 0.12 3.96 6.17 86.36 0.53 4.49 16 28 C -0.12 -3.73 4.96 30.67 0.15 -3.58 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.50 7.27 -2.39 -0.02 1.48 16 32 H 0.36 17.45 5.30 -92.71 -0.49 16.96 16 33 H 0.24 14.71 6.77 -92.71 -0.63 14.08 16 34 H 0.07 2.29 7.31 -2.39 -0.02 2.28 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.10 2.89 4.45 -2.39 -0.01 2.88 16 37 H 0.06 2.30 7.64 -2.39 -0.02 2.29 16 38 H 0.14 3.74 6.02 -2.91 -0.02 3.73 16 39 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 40 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.15 3.12 7.98 -2.91 -0.02 3.09 16 44 H 0.09 2.90 7.00 -2.39 -0.02 2.88 16 45 H 0.05 2.01 6.94 -2.39 -0.02 1.99 16 46 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -70.76 371.20 2.98 -67.78 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.65 Total: 34.59 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.69 Total: -4.74 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -5.35 Total: -128.78 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.06 Total: -21.79 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.94 kcal Total: -70.76 2.98 -67.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274368628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.454 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds