Wall clock time and date at job start Tue Mar 31 2020 22:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36543 * 120.08913 * 2 1 4 4 C 1.40717 * 118.24094 * 180.24260 * 3 2 1 5 5 C 1.40422 * 121.27312 * 179.80860 * 4 3 2 6 6 C 1.36127 * 119.64840 * 179.97438 * 5 4 3 7 7 C 1.39440 * 120.91889 * 359.97438 * 6 5 4 8 8 C 1.35996 * 121.08620 * 0.02819 * 7 6 5 9 9 C 1.40820 * 119.74056 * 359.95069 * 8 7 6 10 10 N 1.33249 * 121.00577 * 180.02562 * 9 8 7 11 11 C 1.31898 * 121.30215 * 179.97438 * 10 9 8 12 12 C 1.48274 * 119.23660 * 179.97438 * 11 10 9 13 13 O 1.21503 * 119.99751 * 174.44155 * 12 11 10 14 14 N 1.34776 * 119.99992 * 354.44294 * 12 11 10 15 15 C 1.46498 * 119.99805 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.47681 * 325.00092 * 15 14 12 17 17 C 1.52999 * 109.47075 * 204.99817 * 15 14 12 18 18 N 1.46496 * 109.47277 * 55.00190 * 17 15 14 19 19 C 1.36940 * 120.00185 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99614 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99912 * 179.97438 * 19 18 17 22 22 N 1.31611 * 119.99859 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47185 * 89.99920 * 23 21 19 25 25 H 1.48504 * 109.47045 * 209.99959 * 23 21 19 26 26 H 1.48505 * 109.47148 * 329.99952 * 23 21 19 27 27 C 1.53009 * 109.47262 * 84.99848 * 15 14 12 28 28 C 1.52994 * 117.49778 * 8.74442 * 27 15 14 29 29 C 1.53002 * 117.49562 * 300.08641 * 27 15 14 30 30 H 1.08996 * 109.47507 * 263.34678 * 1 2 3 31 31 H 1.09000 * 109.47664 * 23.34838 * 1 2 3 32 32 H 1.09005 * 109.46880 * 143.34482 * 1 2 3 33 33 H 1.08003 * 120.87962 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.17956 * 359.97438 * 5 4 3 35 35 H 1.08005 * 119.54370 * 179.97438 * 6 5 4 36 36 H 1.08000 * 119.45944 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.12481 * 180.02562 * 8 7 6 38 38 H 0.96996 * 120.00071 * 359.97438 * 14 12 11 39 39 H 1.09007 * 109.47098 * 175.00395 * 17 15 14 40 40 H 1.09006 * 109.47055 * 295.00147 * 17 15 14 41 41 H 0.97000 * 119.99812 * 359.97438 * 18 17 15 42 42 H 0.96996 * 120.00096 * 180.02562 * 22 21 19 43 43 H 1.08999 * 115.55072 * 154.41713 * 27 15 14 44 44 H 1.09004 * 117.50115 * 0.02562 * 28 27 15 45 45 H 1.09002 * 117.49834 * 145.01703 * 28 27 15 46 46 H 1.08997 * 117.49556 * 214.97539 * 29 27 15 47 47 H 1.08992 * 117.49789 * 359.97389 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1915 1.1814 0.0000 4 6 3.5980 1.1361 -0.0052 5 6 4.3652 2.3121 -0.0096 6 6 5.7240 2.2297 -0.0141 7 6 6.3667 0.9922 -0.0139 8 6 5.6568 -0.1677 -0.0098 9 6 4.2492 -0.1253 -0.0047 10 7 3.5287 -1.2462 -0.0001 11 6 2.2102 -1.2133 0.0053 12 6 1.4539 -2.4886 0.0097 13 8 0.2437 -2.4768 0.1165 14 7 2.1090 -3.6609 -0.1049 15 6 1.3618 -4.9210 -0.1000 16 1 0.5078 -4.8346 0.5719 17 6 2.2738 -6.0529 0.3774 18 7 2.8413 -5.7053 1.6825 19 6 3.6944 -6.5726 2.3111 20 1 3.9484 -7.5131 1.8450 21 6 4.2325 -6.2430 3.5476 22 7 5.0520 -7.0768 4.1520 23 14 3.7924 -4.6165 4.3541 24 1 2.5878 -4.7954 5.2039 25 1 4.9275 -4.1577 5.1945 26 1 3.5121 -3.6036 3.3049 27 6 0.8679 -5.2266 -1.5156 28 6 1.3867 -4.3422 -2.6511 29 6 -0.0617 -4.2059 -2.1751 30 1 -0.3634 -0.1191 1.0207 31 1 -0.3634 0.9435 -0.4073 32 1 -0.3633 -0.8245 -0.6135 33 1 1.6674 2.1258 -0.0004 34 1 3.8800 3.2770 -0.0093 35 1 6.3125 3.1353 -0.0178 36 1 7.4460 0.9543 -0.0180 37 1 6.1706 -1.1177 -0.0094 38 1 3.0751 -3.6703 -0.1906 39 1 1.6956 -6.9726 0.4659 40 1 3.0797 -6.1982 -0.3422 41 1 2.6134 -4.8604 2.1009 42 1 5.4277 -6.8466 5.0161 43 1 0.6963 -6.2801 -1.7364 44 1 2.0802 -3.5429 -2.3898 45 1 1.5562 -4.8138 -3.6191 46 1 -0.8446 -4.5880 -2.8302 47 1 -0.3218 -3.3171 -1.6005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276626290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:17 Heat of formation + Delta-G solvation = 48.701130 kcal Electronic energy + Delta-G solvation = -29574.233348 eV Core-core repulsion = 25722.577416 eV Total energy + Delta-G solvation = -3851.655932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28072 -41.07732 -38.84274 -37.77223 -36.72661 -35.50753 -34.64414 -33.37827 -32.65772 -31.46882 -30.11750 -28.02854 -26.53835 -25.66200 -23.65002 -23.43049 -23.06076 -22.97535 -22.43893 -20.97806 -20.01871 -19.17414 -18.97658 -17.72468 -17.46089 -17.12771 -16.66895 -16.46280 -16.03552 -15.78084 -15.51844 -15.36146 -15.15720 -14.88380 -14.83782 -14.60627 -14.29613 -14.00448 -13.93105 -13.84000 -13.48998 -13.25231 -12.97786 -12.86864 -12.75132 -12.66901 -12.60309 -12.51028 -12.28958 -12.18340 -11.89031 -11.42055 -11.32125 -11.10010 -11.05631 -10.84405 -10.47280 -10.10209 -9.73494 -9.35833 -9.25042 -8.08229 -5.40225 -0.88342 -0.38446 0.88047 1.29142 1.30020 1.33800 1.36530 1.97174 2.15311 2.39833 2.89563 2.93467 3.03651 3.24482 3.42229 3.50947 3.62519 3.69500 3.81170 3.87866 4.01253 4.04807 4.07028 4.18203 4.31795 4.34417 4.37150 4.41973 4.55661 4.60376 4.73477 4.77811 4.82270 4.85879 4.91152 5.02259 5.03125 5.05929 5.07795 5.22325 5.27394 5.34495 5.37104 5.43417 5.46202 5.58979 5.71734 5.83785 6.15940 6.31986 6.64877 7.01429 7.05384 7.77461 7.95170 9.13328 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.004677 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.594004 B = 5985.699914 C = 8056.142820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.059 4.059 4 C -0.094 4.094 5 C -0.102 4.102 6 C -0.102 4.102 7 C -0.095 4.095 8 C -0.114 4.114 9 C 0.089 3.911 10 N -0.464 5.464 11 C 0.088 3.912 12 C 0.565 3.435 13 O -0.536 6.536 14 N -0.693 5.693 15 C 0.172 3.828 16 H 0.080 0.920 17 C 0.152 3.848 18 N -0.757 5.757 19 C -0.228 4.228 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.977 5.977 23 Si 0.943 3.057 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.269 1.269 27 C -0.164 4.164 28 C -0.170 4.170 29 C -0.179 4.179 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.128 0.872 38 H 0.411 0.589 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.362 0.638 42 H 0.258 0.742 43 H 0.129 0.871 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 23.702 -15.169 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.096 4.096 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.133 4.133 9 C -0.034 4.034 10 N -0.175 5.175 11 C -0.065 4.065 12 C 0.351 3.649 13 O -0.415 6.415 14 N -0.343 5.343 15 C 0.068 3.932 16 H 0.098 0.902 17 C 0.026 3.974 18 N -0.403 5.403 19 C -0.359 4.359 20 H 0.085 0.915 21 C -0.244 4.244 22 N -0.628 5.628 23 Si 0.772 3.228 24 H -0.208 1.208 25 H -0.219 1.219 26 H -0.195 1.195 27 C -0.184 4.184 28 C -0.208 4.208 29 C -0.216 4.216 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.202 0.798 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.146 0.854 38 H 0.247 0.753 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.195 0.805 42 H 0.067 0.933 43 H 0.147 0.853 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.196 22.668 -15.078 27.716 hybrid contribution 0.276 0.789 1.037 1.332 sum -4.920 23.457 -14.041 27.777 Atomic orbital electron populations 1.20983 0.87887 1.04140 1.03348 1.20725 0.99255 0.91948 0.98738 1.21775 0.92167 0.99163 0.95356 1.19292 0.95037 0.94718 1.00585 1.21405 0.94440 0.97304 0.98847 1.21476 0.94858 0.98828 0.96747 1.21334 1.01923 0.91541 0.96711 1.21072 0.90854 1.00673 1.00701 1.19267 0.95011 0.88312 1.00857 1.67757 1.06931 1.32346 1.10459 1.21260 0.89878 0.94244 1.01107 1.18140 0.86758 0.83506 0.76537 1.90642 1.13281 1.86840 1.50712 1.45971 1.11785 1.05115 1.71477 1.20712 0.94163 0.82213 0.96159 0.90235 1.21046 0.95030 0.95447 0.85861 1.42715 1.56011 1.20731 1.20845 1.19061 1.17740 0.99099 0.99984 0.91467 1.25268 0.99932 1.00878 0.98273 1.69834 1.37176 1.38276 1.17523 0.85593 0.77199 0.81423 0.78581 1.20822 1.21870 1.19507 1.22605 1.05590 0.98369 0.91821 1.22922 0.97237 1.02295 0.98310 1.23305 0.93306 1.01624 1.03384 0.91328 0.89235 0.89953 0.79821 0.81496 0.81580 0.82487 0.85356 0.75286 0.93013 0.94217 0.80519 0.93270 0.85279 0.90453 0.87357 0.87498 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 8.68 71.24 0.62 -1.69 16 2 C -0.10 -2.60 5.89 -19.78 -0.12 -2.72 16 3 C -0.06 -1.14 9.50 22.48 0.21 -0.93 16 4 C -0.09 -2.03 5.75 -21.22 -0.12 -2.15 16 5 C -0.10 -1.40 9.77 22.31 0.22 -1.18 16 6 C -0.10 -1.24 9.96 22.07 0.22 -1.02 16 7 C -0.10 -1.54 9.94 22.04 0.22 -1.32 16 8 C -0.11 -2.76 9.99 22.38 0.22 -2.53 16 9 C 0.09 2.51 6.61 40.48 0.27 2.77 16 10 N -0.46 -15.20 9.48 -177.78 -1.69 -16.88 16 11 C 0.09 2.77 6.75 42.29 0.29 3.05 16 12 C 0.56 18.93 6.58 86.91 0.57 19.50 16 13 O -0.54 -18.36 10.25 -3.72 -0.04 -18.40 16 14 N -0.69 -23.37 3.04 -444.99 -1.35 -24.72 16 15 C 0.17 5.64 2.59 44.99 0.12 5.76 16 16 H 0.08 2.84 7.58 -2.39 -0.02 2.83 16 17 C 0.15 5.82 5.80 86.38 0.50 6.33 16 18 N -0.76 -36.63 5.24 -343.45 -1.80 -38.42 16 19 C -0.23 -13.22 10.47 84.03 0.88 -12.34 16 20 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 21 C -0.05 -3.11 5.50 84.86 0.47 -2.65 16 22 N -0.98 -63.48 13.97 21.65 0.30 -63.18 16 23 Si 0.94 48.64 27.74 68.60 1.90 50.55 16 24 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 26 H -0.27 -13.41 6.52 99.48 0.65 -12.76 16 27 C -0.16 -4.35 5.71 -10.79 -0.06 -4.41 16 28 C -0.17 -4.20 9.74 30.62 0.30 -3.90 16 29 C -0.18 -4.48 9.82 30.62 0.30 -4.18 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.29 8.04 -2.39 -0.02 1.27 16 32 H 0.08 2.09 5.81 -2.38 -0.01 2.08 16 33 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 36 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.41 14.56 7.92 -92.71 -0.73 13.83 16 39 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.36 17.65 5.19 -92.71 -0.48 17.17 16 42 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 43 H 0.13 3.00 8.11 -2.39 -0.02 2.98 16 44 H 0.08 2.15 6.67 -2.39 -0.02 2.13 16 45 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.10 2.85 5.01 -2.39 -0.01 2.84 16 Total: -1.00 -75.14 381.18 2.17 -72.97 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: -0.26 Total: 41.71 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.10 Total: -3.62 kcal Atomic # 7 Polarization: -138.67 SS G_CDS: -4.53 Total: -143.20 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.04 Total: -18.40 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.90 Total: 50.55 kcal Total: -75.14 2.17 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276626290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.669 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds