Wall clock time and date at job start Tue Mar 31 2020 22:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 110.88668 * 2 1 4 4 C 1.34768 * 120.00137 * 297.57715 * 3 2 1 5 5 O 1.21279 * 120.00332 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47315 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47340 * 180.02562 * 7 6 4 9 9 N 1.46502 * 109.46978 * 180.02562 * 8 7 6 10 10 C 1.36377 * 125.96385 * 269.68919 * 9 8 7 11 11 O 1.35628 * 125.98821 * 0.03729 * 10 9 8 12 12 N 1.30905 * 108.02120 * 179.88845 * 10 9 8 13 13 N 1.40115 * 107.94316 * 0.37162 * 12 10 9 14 14 C 1.30909 * 107.93616 * 359.76540 * 13 12 10 15 15 O 1.35636 * 125.98731 * 180.02562 * 14 13 12 16 16 C 1.55157 * 111.04029 * 123.91047 * 2 1 3 17 17 C 1.54334 * 103.02095 * 153.39138 * 16 2 1 18 18 N 1.47014 * 107.26782 * 338.14225 * 17 16 2 19 19 C 1.36945 * 125.64902 * 178.84833 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.68982 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.68887 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47428 * 108.70537 * 358.58102 * 18 17 16 28 28 H 1.09001 * 109.46863 * 182.42381 * 1 2 3 29 29 H 1.09006 * 109.46671 * 302.41970 * 1 2 3 30 30 H 1.08993 * 109.47559 * 62.42536 * 1 2 3 31 31 H 0.97003 * 119.99120 * 117.57764 * 3 2 1 32 32 H 1.08992 * 109.47480 * 300.00483 * 6 4 3 33 33 H 1.09003 * 109.47147 * 60.00371 * 6 4 3 34 34 H 1.09001 * 109.47382 * 300.00479 * 7 6 4 35 35 H 1.08996 * 109.47388 * 60.00257 * 7 6 4 36 36 H 1.08993 * 109.47204 * 299.99776 * 8 7 6 37 37 H 1.09000 * 109.46840 * 60.00209 * 8 7 6 38 38 H 0.96708 * 113.99710 * 90.00039 * 11 10 9 39 39 H 0.96700 * 113.99956 * 269.97455 * 15 14 13 40 40 H 1.08998 * 110.71770 * 271.95306 * 16 2 1 41 41 H 1.08998 * 110.71728 * 35.22660 * 16 2 1 42 42 H 1.08998 * 109.99457 * 218.65928 * 17 16 2 43 43 H 1.09007 * 109.77698 * 97.49747 * 17 16 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.36579 * 143.19056 * 27 18 17 46 46 H 1.08993 * 110.36917 * 265.41008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 -1.0345 5 8 1.1177 1.7977 -1.9658 6 6 2.3245 3.5991 -1.0342 7 6 1.8821 4.3139 -2.3125 8 6 2.4277 5.7434 -2.3125 9 7 2.0034 6.4280 -3.5363 10 6 2.6881 6.4585 -4.7153 11 8 3.8802 5.8599 -4.9604 12 7 1.9914 7.1640 -5.5700 13 7 0.8313 7.6062 -4.9205 14 6 0.8579 7.1509 -3.6935 15 8 -0.0885 7.3609 -2.7448 16 6 2.0870 -0.8079 1.2018 17 6 3.4666 -1.2786 0.6948 18 7 3.4274 -1.2420 -0.7743 19 6 4.4642 -1.5649 -1.6087 20 1 4.3329 -1.5102 -2.6792 21 6 5.6838 -1.9626 -1.0784 22 7 5.8437 -2.0297 0.2264 23 14 7.0978 -2.4038 -2.2166 24 1 8.2813 -2.7923 -1.4081 25 1 6.6975 -3.5389 -3.0863 26 1 7.4389 -1.2302 -3.0601 27 6 2.0852 -0.8062 -1.2008 28 1 -0.3633 -1.0268 0.0435 29 1 -0.3633 0.5510 0.8676 30 1 -0.3634 0.4757 -0.9108 31 1 2.5885 1.6831 0.7447 32 1 1.9390 4.1348 -0.1668 33 1 3.4134 3.5728 -0.9905 34 1 2.2673 3.7784 -3.1802 35 1 0.7933 4.3402 -2.3558 36 1 2.0427 6.2792 -1.4449 37 1 3.5165 5.7167 -2.2694 38 1 3.8049 4.9556 -5.2948 39 1 0.0613 8.1511 -2.2080 40 1 2.1930 -0.1700 2.0793 41 1 1.4482 -1.6635 1.4205 42 1 3.6617 -2.2955 1.0353 43 1 4.2431 -0.6073 1.0618 44 1 6.6959 -2.3080 0.5969 45 1 2.1553 -0.1712 -2.0840 46 1 1.4528 -1.6701 -1.4047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278410961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:37 Heat of formation + Delta-G solvation = 0.918877 kcal Electronic energy + Delta-G solvation = -29974.745605 eV Core-core repulsion = 25710.168416 eV Total energy + Delta-G solvation = -4264.577189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54983 -39.97466 -38.48354 -37.57679 -37.38336 -35.86566 -34.00030 -32.74430 -31.80619 -30.07981 -29.86670 -28.75192 -27.34505 -25.71495 -23.86359 -23.10885 -23.03938 -22.03541 -20.71605 -20.10940 -19.19805 -19.10891 -18.91331 -17.41326 -16.95537 -16.84789 -16.27462 -15.93815 -15.70694 -15.57101 -14.68902 -14.46151 -14.31791 -13.94973 -13.76210 -13.43097 -13.28170 -13.02221 -12.76700 -12.64037 -12.59892 -12.12832 -12.04857 -11.97628 -11.80349 -11.71337 -11.54037 -11.22974 -10.94459 -10.91481 -10.80004 -10.46194 -10.42259 -10.30645 -10.15425 -10.04454 -9.73300 -9.70450 -9.33988 -8.70023 -8.58948 -6.85042 -5.75692 -3.07772 1.22369 1.42713 1.93780 2.87356 2.92751 3.29879 3.36737 3.41678 3.42489 3.55803 4.07168 4.41351 4.46462 4.58808 4.78977 4.88826 4.90708 4.98846 5.00455 5.17533 5.30192 5.34809 5.38534 5.44375 5.56047 5.66788 5.71552 5.80860 5.88081 5.95193 6.08230 6.09663 6.29202 6.34155 6.48191 6.61688 6.69956 6.77298 7.00281 7.07768 7.49235 7.51086 7.59395 7.74522 7.83261 8.21462 8.50939 9.18848 9.78933 10.45039 11.36200 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.002842 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.677250 B = 9850.922468 C =11547.872076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 N -0.701 5.701 4 C 0.516 3.484 5 O -0.541 6.541 6 C -0.138 4.138 7 C -0.117 4.117 8 C 0.100 3.900 9 N -0.509 5.509 10 C 0.410 3.590 11 O -0.437 6.437 12 N -0.299 5.299 13 N -0.299 5.299 14 C 0.406 3.594 15 O -0.434 6.434 16 C -0.147 4.147 17 C 0.178 3.822 18 N -0.603 5.603 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.925 5.925 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.286 1.286 27 C 0.132 3.868 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.410 0.590 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.252 0.748 45 H 0.055 0.945 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 16.740 2.823 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.070 3.930 3 N -0.351 5.351 4 C 0.302 3.698 5 O -0.419 6.419 6 C -0.179 4.179 7 C -0.155 4.155 8 C -0.023 4.023 9 N -0.228 5.228 10 C 0.100 3.900 11 O -0.237 6.237 12 N -0.143 5.143 13 N -0.144 5.144 14 C 0.096 3.904 15 O -0.234 6.234 16 C -0.186 4.186 17 C 0.053 3.947 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.213 1.213 27 C 0.005 3.995 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.276 0.724 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.982 17.099 0.856 19.333 hybrid contribution 1.665 -1.031 1.353 2.380 sum -7.316 16.068 2.210 17.793 Atomic orbital electron populations 1.21982 0.94441 1.02009 1.02256 1.21473 0.92438 0.80911 0.98224 1.45803 1.54040 1.12764 1.22466 1.20277 0.80298 0.86967 0.82254 1.90670 1.39505 1.76830 1.34882 1.21538 1.03190 0.94017 0.99114 1.21639 1.02790 0.92433 0.98686 1.22058 1.02108 0.93778 0.84405 1.47155 1.17902 1.43851 1.13937 1.21366 0.87160 0.98160 0.83335 1.84922 1.18780 1.34380 1.85668 1.78376 0.99867 1.16039 1.20023 1.78351 1.12415 1.21462 1.02147 1.21305 0.83030 0.95297 0.90786 1.84993 1.40855 1.50577 1.46937 1.23233 1.00554 0.98891 0.95890 1.21144 0.89978 0.99833 0.83729 1.44435 1.07769 1.78937 1.01776 1.19007 0.89332 1.37874 0.88943 0.90701 1.24760 0.97754 1.01956 0.96010 1.69937 1.24219 1.53931 1.09201 0.86215 0.81837 0.78327 0.79487 1.21612 1.21180 1.21274 1.21876 0.87527 0.94877 0.95239 0.91897 0.93193 0.91128 0.76849 0.88854 0.88366 0.90464 0.90046 0.88449 0.87861 0.72426 0.73193 0.91791 0.90963 0.93927 0.93655 0.93796 0.92691 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.59 37.16 0.32 -1.82 16 2 C 0.16 2.59 0.83 -129.67 -0.11 2.48 16 3 N -0.70 -10.06 5.18 -45.62 -0.24 -10.30 16 4 C 0.52 7.26 7.22 -10.99 -0.08 7.19 16 5 O -0.54 -9.55 12.78 5.56 0.07 -9.48 16 6 C -0.14 -1.22 5.70 -27.89 -0.16 -1.38 16 7 C -0.12 -1.04 4.83 -26.73 -0.13 -1.17 16 8 C 0.10 0.64 6.02 -4.04 -0.02 0.61 16 9 N -0.51 -4.65 2.76 -120.05 -0.33 -4.99 16 10 C 0.41 4.45 9.15 -88.81 -0.81 3.64 16 11 O -0.44 -3.76 13.58 -18.58 -0.25 -4.01 16 12 N -0.30 -4.08 12.72 29.66 0.38 -3.71 16 13 N -0.30 -4.00 12.72 29.66 0.38 -3.63 16 14 C 0.41 4.14 9.15 -88.81 -0.81 3.32 16 15 O -0.43 -3.06 13.58 -18.61 -0.25 -3.32 16 16 C -0.15 -2.47 5.99 -24.89 -0.15 -2.62 16 17 C 0.18 4.04 5.37 -3.06 -0.02 4.02 16 18 N -0.60 -14.94 3.39 -170.06 -0.58 -15.51 16 19 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.28 10.31 55.49 0.57 -25.70 16 23 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 27 C 0.13 2.79 6.10 -2.52 -0.02 2.77 16 28 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.12 6.53 -51.93 -0.34 0.78 16 31 H 0.40 4.86 8.49 -40.82 -0.35 4.51 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.42 1.86 9.06 45.56 0.41 2.28 16 39 H 0.41 0.52 9.06 45.56 0.41 0.93 16 40 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 41 H 0.07 1.15 8.02 -51.93 -0.42 0.73 16 42 H 0.04 1.09 7.52 -51.93 -0.39 0.70 16 43 H 0.05 1.12 7.37 -51.93 -0.38 0.74 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.05 1.25 6.32 -51.93 -0.33 0.93 16 46 H 0.02 0.50 8.04 -51.93 -0.42 0.09 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -37.53 382.21 -6.89 -44.42 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.13 Total: 3.29 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -2.24 Total: 10.41 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.18 Total: -63.84 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.43 Total: -16.80 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.53 -6.89 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278410961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.335 kcal (2) G-P(sol) polarization free energy of solvation -37.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds