Wall clock time and date at job start Tue Mar 31 2020 22:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 110.88668 * 2 1 4 4 C 1.34768 * 120.00137 * 297.57715 * 3 2 1 5 5 O 1.21279 * 120.00332 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47315 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47340 * 180.02562 * 7 6 4 9 9 N 1.46502 * 109.46978 * 180.02562 * 8 7 6 10 10 C 1.36377 * 125.96385 * 269.68919 * 9 8 7 11 11 O 1.35628 * 125.98821 * 0.03729 * 10 9 8 12 12 N 1.30905 * 108.02120 * 179.88845 * 10 9 8 13 13 N 1.40115 * 107.94316 * 0.37162 * 12 10 9 14 14 C 1.30909 * 107.93616 * 359.76540 * 13 12 10 15 15 O 1.35636 * 125.98731 * 180.02562 * 14 13 12 16 16 C 1.55157 * 111.04029 * 123.91047 * 2 1 3 17 17 C 1.54334 * 103.02095 * 153.39138 * 16 2 1 18 18 N 1.47014 * 107.26782 * 338.14225 * 17 16 2 19 19 C 1.36945 * 125.64902 * 178.84833 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.68982 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.68887 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47428 * 108.70537 * 358.58102 * 18 17 16 28 28 H 1.09001 * 109.46863 * 182.42381 * 1 2 3 29 29 H 1.09006 * 109.46671 * 302.41970 * 1 2 3 30 30 H 1.08993 * 109.47559 * 62.42536 * 1 2 3 31 31 H 0.97003 * 119.99120 * 117.57764 * 3 2 1 32 32 H 1.08992 * 109.47480 * 300.00483 * 6 4 3 33 33 H 1.09003 * 109.47147 * 60.00371 * 6 4 3 34 34 H 1.09001 * 109.47382 * 300.00479 * 7 6 4 35 35 H 1.08996 * 109.47388 * 60.00257 * 7 6 4 36 36 H 1.08993 * 109.47204 * 299.99776 * 8 7 6 37 37 H 1.09000 * 109.46840 * 60.00209 * 8 7 6 38 38 H 0.96708 * 113.99710 * 90.00039 * 11 10 9 39 39 H 0.96700 * 113.99956 * 269.97455 * 15 14 13 40 40 H 1.08998 * 110.71770 * 271.95306 * 16 2 1 41 41 H 1.08998 * 110.71728 * 35.22660 * 16 2 1 42 42 H 1.08998 * 109.99457 * 218.65928 * 17 16 2 43 43 H 1.09007 * 109.77698 * 97.49747 * 17 16 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.36579 * 143.19056 * 27 18 17 46 46 H 1.08993 * 110.36917 * 265.41008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 -1.0345 5 8 1.1177 1.7977 -1.9658 6 6 2.3245 3.5991 -1.0342 7 6 1.8821 4.3139 -2.3125 8 6 2.4277 5.7434 -2.3125 9 7 2.0034 6.4280 -3.5363 10 6 2.6881 6.4585 -4.7153 11 8 3.8802 5.8599 -4.9604 12 7 1.9914 7.1640 -5.5700 13 7 0.8313 7.6062 -4.9205 14 6 0.8579 7.1509 -3.6935 15 8 -0.0885 7.3609 -2.7448 16 6 2.0870 -0.8079 1.2018 17 6 3.4666 -1.2786 0.6948 18 7 3.4274 -1.2420 -0.7743 19 6 4.4642 -1.5649 -1.6087 20 1 4.3329 -1.5102 -2.6792 21 6 5.6838 -1.9626 -1.0784 22 7 5.8437 -2.0297 0.2264 23 14 7.0978 -2.4038 -2.2166 24 1 8.2813 -2.7923 -1.4081 25 1 6.6975 -3.5389 -3.0863 26 1 7.4389 -1.2302 -3.0601 27 6 2.0852 -0.8062 -1.2008 28 1 -0.3633 -1.0268 0.0435 29 1 -0.3633 0.5510 0.8676 30 1 -0.3634 0.4757 -0.9108 31 1 2.5885 1.6831 0.7447 32 1 1.9390 4.1348 -0.1668 33 1 3.4134 3.5728 -0.9905 34 1 2.2673 3.7784 -3.1802 35 1 0.7933 4.3402 -2.3558 36 1 2.0427 6.2792 -1.4449 37 1 3.5165 5.7167 -2.2694 38 1 3.8049 4.9556 -5.2948 39 1 0.0613 8.1511 -2.2080 40 1 2.1930 -0.1700 2.0793 41 1 1.4482 -1.6635 1.4205 42 1 3.6617 -2.2955 1.0353 43 1 4.2431 -0.6073 1.0618 44 1 6.6959 -2.3080 0.5969 45 1 2.1553 -0.1712 -2.0840 46 1 1.4528 -1.6701 -1.4047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278410961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:37 Heat of formation + Delta-G solvation = -34.126893 kcal Electronic energy + Delta-G solvation = -29976.265304 eV Core-core repulsion = 25710.168416 eV Total energy + Delta-G solvation = -4266.096888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.30645 -41.20282 -39.12385 -38.98309 -38.03964 -36.65090 -35.63299 -33.82813 -33.21633 -31.62956 -30.68028 -30.34592 -28.09874 -27.51091 -25.44797 -24.02085 -23.82578 -22.77150 -22.21172 -21.43571 -20.41377 -19.80568 -19.66085 -18.96334 -18.07698 -17.68132 -17.17749 -17.06496 -16.76610 -16.63768 -16.37910 -15.71217 -15.43388 -15.16304 -15.04406 -14.63093 -14.23430 -13.96031 -13.88192 -13.59739 -13.56436 -13.46461 -13.35152 -13.16406 -12.96275 -12.88109 -12.78417 -12.74291 -12.34641 -12.12522 -12.05785 -11.98327 -11.91518 -11.68929 -11.52260 -11.51227 -11.06832 -10.70969 -10.55424 -10.54571 -9.90953 -8.86792 -7.86339 -5.20025 0.51003 0.74761 1.14464 1.43994 1.46064 1.52639 1.80393 2.22057 2.32350 2.47784 2.90616 3.31821 3.51014 3.55884 3.67847 3.76151 3.91395 4.04764 4.08922 4.17346 4.20245 4.30692 4.38923 4.45427 4.64892 4.65575 4.70885 4.71413 4.86473 4.90103 4.93836 5.03826 5.04312 5.09429 5.17214 5.33236 5.35875 5.42064 5.65928 5.73057 5.80948 6.19726 6.22594 6.46435 6.74554 6.80268 7.11468 7.44115 7.77406 8.41649 9.23084 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.002842 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.677250 B = 9850.922468 C =11547.872076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 N -0.700 5.700 4 C 0.506 3.494 5 O -0.583 6.583 6 C -0.126 4.126 7 C -0.109 4.109 8 C 0.103 3.897 9 N -0.504 5.504 10 C 0.414 3.586 11 O -0.438 6.438 12 N -0.343 5.343 13 N -0.345 5.345 14 C 0.421 3.579 15 O -0.433 6.433 16 C -0.129 4.129 17 C 0.185 3.815 18 N -0.620 5.620 19 C -0.243 4.243 20 H 0.067 0.933 21 C -0.056 4.056 22 N -0.945 5.945 23 Si 0.972 3.028 24 H -0.290 1.290 25 H -0.283 1.283 26 H -0.278 1.278 27 C 0.128 3.872 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.410 0.590 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.432 0.568 39 H 0.436 0.564 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.004 0.996 43 H 0.021 0.979 44 H 0.248 0.752 45 H 0.032 0.968 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 18.161 4.846 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.080 3.920 3 N -0.351 5.351 4 C 0.294 3.706 5 O -0.463 6.463 6 C -0.166 4.166 7 C -0.148 4.148 8 C -0.018 4.018 9 N -0.224 5.224 10 C 0.103 3.897 11 O -0.241 6.241 12 N -0.187 5.187 13 N -0.190 5.190 14 C 0.110 3.890 15 O -0.237 6.237 16 C -0.168 4.168 17 C 0.061 3.939 18 N -0.346 5.346 19 C -0.372 4.372 20 H 0.085 0.915 21 C -0.250 4.250 22 N -0.593 5.593 23 Si 0.801 3.199 24 H -0.216 1.216 25 H -0.210 1.210 26 H -0.204 1.204 27 C 0.002 3.998 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.247 0.753 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.295 0.705 39 H 0.299 0.701 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.195 18.544 2.913 20.903 hybrid contribution 1.704 -1.545 0.729 2.413 sum -7.491 16.999 3.642 18.930 Atomic orbital electron populations 1.21893 0.92299 1.02783 1.02704 1.21258 0.93791 0.81643 0.95263 1.45803 1.54232 1.11784 1.23291 1.21237 0.79418 0.88740 0.81181 1.90661 1.41370 1.78007 1.36282 1.21544 1.03822 0.90639 1.00564 1.21510 1.01514 0.93893 0.97879 1.22247 1.03084 0.92168 0.84347 1.47206 1.17340 1.43586 1.14217 1.21398 0.87230 0.97463 0.83597 1.84892 1.17824 1.35619 1.85781 1.78245 1.00896 1.17896 1.21701 1.78229 1.13136 1.23701 1.03891 1.21328 0.83074 0.93982 0.90652 1.84971 1.39916 1.52288 1.46479 1.23099 0.96764 0.99969 0.96919 1.20942 0.93052 0.97267 0.82675 1.44677 1.08429 1.78855 1.02625 1.19264 0.90624 1.38090 0.89251 0.91497 1.25488 0.99878 1.02181 0.97447 1.70133 1.24331 1.54435 1.10449 0.85256 0.78779 0.78132 0.77775 1.21570 1.20985 1.20365 1.21975 0.86177 0.94897 0.96764 0.91264 0.90310 0.92782 0.75335 0.84715 0.86933 0.93036 0.91934 0.84885 0.86287 0.70513 0.70092 0.88130 0.89647 0.97779 0.96038 0.94285 0.94926 0.96698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.59 71.98 0.62 -3.05 16 2 C 0.17 5.29 0.83 5.00 0.00 5.30 16 3 N -0.70 -18.55 5.18 -416.65 -2.16 -20.70 16 4 C 0.51 13.39 7.22 87.66 0.63 14.02 16 5 O -0.58 -20.49 12.78 -3.03 -0.04 -20.53 16 6 C -0.13 -1.81 5.70 29.85 0.17 -1.64 16 7 C -0.11 -1.72 4.83 30.59 0.15 -1.57 16 8 C 0.10 0.98 6.02 86.38 0.52 1.50 16 9 N -0.50 -8.35 2.76 -755.16 -2.08 -10.44 16 10 C 0.41 8.76 9.15 179.71 1.65 10.40 16 11 O -0.44 -7.16 13.58 -89.41 -1.21 -8.37 16 12 N -0.34 -9.54 12.72 -173.66 -2.21 -11.75 16 13 N -0.34 -9.27 12.72 -173.65 -2.21 -11.47 16 14 C 0.42 8.02 9.15 179.72 1.65 9.66 16 15 O -0.43 -5.05 13.58 -89.50 -1.22 -6.27 16 16 C -0.13 -4.06 5.99 31.79 0.19 -3.87 16 17 C 0.19 8.47 5.37 86.73 0.47 8.94 16 18 N -0.62 -31.29 3.39 -691.96 -2.35 -33.64 16 19 C -0.24 -13.69 10.28 84.03 0.86 -12.83 16 20 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16 22 N -0.94 -54.57 10.31 21.65 0.22 -54.34 16 23 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.13 5.49 6.10 86.86 0.53 6.02 16 28 H 0.07 1.74 8.11 -2.39 -0.02 1.72 16 29 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.05 1.65 6.53 -2.39 -0.02 1.63 16 31 H 0.41 8.72 8.49 -92.71 -0.79 7.93 16 32 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.43 3.64 9.06 -74.05 -0.67 2.97 16 39 H 0.44 -0.27 9.06 -74.06 -0.67 -0.95 16 40 H 0.10 2.47 8.05 -2.39 -0.02 2.45 16 41 H 0.08 2.50 8.02 -2.39 -0.02 2.48 16 42 H 0.00 0.21 7.52 -2.39 -0.02 0.19 16 43 H 0.02 1.07 7.37 -2.38 -0.02 1.05 16 44 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.03 1.53 6.32 -2.39 -0.02 1.52 16 46 H 0.02 0.67 8.04 -2.39 -0.02 0.65 16 Total: -1.00 -86.44 382.21 -4.41 -90.85 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -1.08 Total: 9.27 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 7.90 Total: 30.19 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -10.78 Total: -142.34 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -2.47 Total: -35.17 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -86.44 -4.41 -90.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278410961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.721 kcal (2) G-P(sol) polarization free energy of solvation -86.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds