Wall clock time and date at job start Tue Mar 31 2020 22:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 110.64116 * 2 1 4 4 C 1.34780 * 119.99588 * 59.29937 * 3 2 1 5 5 O 1.21281 * 120.00434 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99575 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47094 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47210 * 179.97438 * 7 6 4 9 9 N 1.46506 * 109.46992 * 179.97438 * 8 7 6 10 10 C 1.36370 * 125.96582 * 269.68933 * 9 8 7 11 11 O 1.35627 * 125.98599 * 0.03646 * 10 9 8 12 12 N 1.30902 * 108.02387 * 179.89190 * 10 9 8 13 13 N 1.40109 * 107.94108 * 0.36863 * 12 10 9 14 14 C 1.30908 * 107.94040 * 359.76947 * 13 12 10 15 15 O 1.35631 * 125.98942 * 179.97438 * 14 13 12 16 16 C 1.55154 * 110.72384 * 236.85874 * 2 1 3 17 17 C 1.54903 * 101.58457 * 205.95949 * 16 2 1 18 18 N 1.47429 * 104.83500 * 37.00761 * 17 16 2 19 19 C 1.36935 * 125.64931 * 155.91471 * 18 17 16 20 20 H 1.08000 * 119.99634 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00036 * 359.97438 * 19 18 17 22 22 N 1.31618 * 119.99644 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99713 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47335 * 60.00434 * 23 21 19 25 25 H 1.48505 * 109.46945 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47433 * 299.99927 * 23 21 19 27 27 C 1.47493 * 108.75695 * 335.89395 * 18 17 16 28 28 H 1.08991 * 109.46930 * 60.69929 * 1 2 3 29 29 H 1.09001 * 109.46845 * 180.70021 * 1 2 3 30 30 H 1.09002 * 109.46996 * 300.70168 * 1 2 3 31 31 H 0.96992 * 119.99723 * 239.29947 * 3 2 1 32 32 H 1.08997 * 109.47561 * 59.99923 * 6 4 3 33 33 H 1.09000 * 109.46976 * 299.99617 * 6 4 3 34 34 H 1.09000 * 109.47531 * 59.99538 * 7 6 4 35 35 H 1.09008 * 109.47250 * 300.00113 * 7 6 4 36 36 H 1.09000 * 109.46884 * 60.00289 * 8 7 6 37 37 H 1.09000 * 109.46955 * 299.99604 * 8 7 6 38 38 H 0.96698 * 114.00049 * 90.00044 * 11 10 9 39 39 H 0.96700 * 113.99434 * 270.02085 * 15 14 13 40 40 H 1.09003 * 111.00279 * 324.03397 * 16 2 1 41 41 H 1.09001 * 111.00336 * 87.87757 * 16 2 1 42 42 H 1.09003 * 110.36931 * 155.84624 * 17 16 2 43 43 H 1.08999 * 110.36605 * 278.17281 * 17 16 2 44 44 H 0.97005 * 119.99123 * 180.02562 * 22 21 19 45 45 H 1.08996 * 110.02945 * 241.66717 * 27 18 17 46 46 H 1.08997 * 109.96287 * 120.34708 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7263 2.2116 1.0037 5 8 1.0104 1.8333 1.9066 6 6 2.2571 3.6221 1.0034 7 6 1.7483 4.3587 2.2441 8 6 2.2877 5.7905 2.2441 9 7 1.8000 6.4960 3.4319 10 6 0.6482 7.2212 3.5160 11 8 -0.2465 7.4150 2.5153 12 7 0.5558 7.6950 4.7328 13 7 1.6830 7.2698 5.4482 14 6 2.4216 6.5471 4.6446 15 8 3.5991 5.9536 4.9623 16 6 2.0791 -0.7933 -1.2151 17 6 3.4652 -1.2447 -0.6913 18 7 3.2495 -1.5470 0.7354 19 6 4.0126 -2.3918 1.4965 20 1 3.7714 -2.5467 2.5378 21 6 5.0961 -3.0488 0.9297 22 7 5.3901 -2.8594 -0.3392 23 14 6.1374 -4.2005 1.9681 24 1 5.2869 -5.2986 2.4936 25 1 7.2242 -4.7731 1.1336 26 1 6.7286 -3.4462 3.1023 27 6 2.0760 -0.7891 1.2087 28 1 -0.3633 0.5029 -0.8961 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 2.6188 1.6736 -0.7223 32 1 1.9142 4.1392 0.1073 33 1 3.3468 3.6002 1.0157 34 1 2.0916 3.8415 3.1400 35 1 0.6585 4.3806 2.2323 36 1 1.9447 6.3080 1.3482 37 1 3.3774 5.7682 2.2562 38 1 -0.9440 6.7463 2.4763 39 1 4.3749 6.5078 4.8011 40 1 1.4470 -1.6529 -1.4383 41 1 2.1821 -0.1489 -2.0882 42 1 3.7993 -2.1364 -1.2217 43 1 4.1930 -0.4409 -0.8028 44 1 6.1471 -3.3189 -0.7353 45 1 2.3712 -0.0991 1.9991 46 1 1.3140 -1.4754 1.5781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278410964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:41 Heat of formation + Delta-G solvation = 3.231964 kcal Electronic energy + Delta-G solvation = -29733.571518 eV Core-core repulsion = 25469.094632 eV Total energy + Delta-G solvation = -4264.476886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.59657 -40.06070 -38.53132 -37.60415 -37.43387 -35.92530 -34.06224 -32.80915 -31.80974 -30.05885 -29.91158 -28.74479 -27.40109 -25.72601 -23.87188 -23.12994 -23.08653 -22.08182 -20.68697 -20.26727 -19.20284 -19.13842 -18.97987 -17.44553 -17.01157 -16.88190 -16.38825 -15.99161 -15.76724 -15.60046 -14.73562 -14.53570 -14.29510 -13.95508 -13.76410 -13.45643 -13.24704 -12.93442 -12.85598 -12.70253 -12.66345 -12.26648 -12.18399 -11.96228 -11.79261 -11.61766 -11.58672 -11.30164 -10.97950 -10.87876 -10.84465 -10.48806 -10.41293 -10.35082 -10.15052 -10.00916 -9.77706 -9.70518 -9.35062 -8.73095 -8.67546 -6.86274 -5.69367 -3.09704 1.17350 1.38626 1.89410 2.78154 2.88115 3.22929 3.38651 3.42669 3.44130 3.49740 4.01845 4.34631 4.46631 4.51588 4.72147 4.82844 4.86341 4.93661 4.98200 5.13964 5.25252 5.32417 5.33605 5.44969 5.51147 5.63508 5.67712 5.76051 5.82883 5.97019 6.09511 6.16228 6.29280 6.38933 6.44454 6.63002 6.65540 6.76588 6.95375 7.06643 7.38533 7.55174 7.58496 7.72490 7.79909 8.30440 8.42568 9.19117 9.79359 10.44119 11.34966 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.002448 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.701330 B =11436.442030 C =12705.363689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 N -0.707 5.707 4 C 0.513 3.487 5 O -0.538 6.538 6 C -0.138 4.138 7 C -0.117 4.117 8 C 0.100 3.900 9 N -0.509 5.509 10 C 0.406 3.594 11 O -0.437 6.437 12 N -0.298 5.298 13 N -0.299 5.299 14 C 0.409 3.591 15 O -0.432 6.432 16 C -0.147 4.147 17 C 0.154 3.846 18 N -0.605 5.605 19 C -0.219 4.219 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.926 5.926 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.137 3.863 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.414 0.586 39 H 0.411 0.589 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 19.190 -2.599 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.073 3.927 3 N -0.358 5.358 4 C 0.299 3.701 5 O -0.416 6.416 6 C -0.179 4.179 7 C -0.156 4.156 8 C -0.023 4.023 9 N -0.229 5.229 10 C 0.096 3.904 11 O -0.238 6.238 12 N -0.142 5.142 13 N -0.143 5.143 14 C 0.099 3.901 15 O -0.232 6.232 16 C -0.186 4.186 17 C 0.029 3.971 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.575 5.575 23 Si 0.745 3.255 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.011 3.989 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.232 0.768 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.270 0.730 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.498 19.522 -0.678 20.923 hybrid contribution 1.528 -1.266 -1.249 2.345 sum -5.970 18.256 -1.927 19.303 Atomic orbital electron populations 1.22044 0.94300 1.02314 1.02180 1.21354 0.92949 0.80444 0.97978 1.46002 1.51704 1.12509 1.25573 1.20337 0.80827 0.86981 0.81939 1.90685 1.37567 1.77672 1.35637 1.21549 1.03023 0.93847 0.99454 1.21649 1.01971 0.92574 0.99438 1.22051 1.01176 0.93278 0.85827 1.47154 1.20878 1.42198 1.12671 1.21313 0.85784 0.93819 0.89461 1.84914 1.39101 1.53080 1.46665 1.78358 1.14105 1.22379 0.99390 1.78378 1.01635 1.13531 1.20767 1.21355 0.90840 0.95803 0.82086 1.85021 1.12157 1.41503 1.84517 1.23358 1.01303 0.98869 0.95037 1.21924 0.89293 1.00596 0.85314 1.44613 1.30570 1.50547 1.07355 1.19055 1.05987 1.16728 0.92953 0.90622 1.24758 0.98780 1.00747 0.96472 1.69764 1.30222 1.46601 1.10886 0.86142 0.79750 0.80617 0.78954 1.21139 1.21573 1.21250 1.21680 0.90246 0.93146 0.93873 0.93248 0.91801 0.90892 0.76845 0.88735 0.88422 0.89784 0.90668 0.88016 0.88275 0.72760 0.73022 0.90560 0.91926 0.87451 0.97252 0.93744 0.94976 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.41 37.16 0.31 -1.91 16 2 C 0.16 2.66 0.81 -129.98 -0.10 2.55 16 3 N -0.71 -9.77 5.15 -45.91 -0.24 -10.01 16 4 C 0.51 6.87 7.04 -10.98 -0.08 6.80 16 5 O -0.54 -9.24 12.93 5.56 0.07 -9.16 16 6 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 7 C -0.12 -0.96 4.83 -26.73 -0.13 -1.09 16 8 C 0.10 0.57 6.01 -4.04 -0.02 0.55 16 9 N -0.51 -4.39 2.76 -120.05 -0.33 -4.72 16 10 C 0.41 3.98 9.15 -88.82 -0.81 3.17 16 11 O -0.44 -2.95 13.57 -18.58 -0.25 -3.20 16 12 N -0.30 -3.87 12.72 29.65 0.38 -3.50 16 13 N -0.30 -3.95 12.72 29.66 0.38 -3.58 16 14 C 0.41 4.21 9.15 -88.81 -0.81 3.39 16 15 O -0.43 -3.40 13.58 -18.59 -0.25 -3.65 16 16 C -0.15 -2.52 6.08 -24.59 -0.15 -2.67 16 17 C 0.15 3.51 5.87 -2.53 -0.01 3.49 16 18 N -0.60 -15.29 3.41 -169.69 -0.58 -15.87 16 19 C -0.22 -6.12 10.28 -15.06 -0.15 -6.27 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 22 N -0.93 -26.33 10.09 55.49 0.56 -25.77 16 23 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.14 2.97 6.20 -2.80 -0.02 2.95 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 30 H 0.07 1.17 6.20 -51.93 -0.32 0.85 16 31 H 0.40 4.53 8.48 -40.82 -0.35 4.18 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.95 8.10 -51.93 -0.42 0.52 16 35 H 0.07 0.66 8.10 -51.92 -0.42 0.23 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.41 0.90 9.06 45.56 0.41 1.31 16 39 H 0.41 0.86 9.06 45.56 0.41 1.27 16 40 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 41 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 42 H 0.11 2.80 5.88 -51.93 -0.31 2.49 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.03 0.76 6.68 -51.93 -0.35 0.41 16 46 H 0.03 0.67 7.80 -51.93 -0.41 0.26 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -37.98 381.37 -6.86 -44.84 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.08 Total: 2.64 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -2.24 Total: 9.25 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.17 Total: -63.44 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.43 Total: -16.02 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.98 -6.86 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278410964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.074 kcal (2) G-P(sol) polarization free energy of solvation -37.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds