Wall clock time and date at job start Tue Mar 31 2020 23:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.35566 * 125.82754 * 2 1 4 4 N 1.35395 * 107.16320 * 179.73406 * 3 2 1 5 5 H 0.97011 * 126.43983 * 179.97438 * 4 3 2 6 6 C 1.36664 * 107.12530 * 0.02562 * 4 3 2 7 7 C 1.47407 * 125.86801 * 179.97438 * 6 4 3 8 8 O 1.21609 * 119.99967 * 353.70510 * 7 6 4 9 9 N 1.34772 * 120.00221 * 173.69602 * 7 6 4 10 10 C 1.46507 * 119.99931 * 3.83058 * 9 7 6 11 11 C 1.53006 * 109.46965 * 83.42100 * 10 9 7 12 12 O 1.42907 * 109.46819 * 64.99990 * 11 10 9 13 13 C 1.46501 * 120.00462 * 183.82409 * 9 7 6 14 14 C 1.53004 * 109.46922 * 90.00216 * 13 9 7 15 15 N 1.46896 * 109.47320 * 180.02562 * 14 13 9 16 16 C 1.46895 * 111.00354 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47400 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99885 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00022 * 179.97438 * 17 16 15 20 20 C 1.37090 * 120.00122 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00400 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00053 * 180.02562 * 20 19 17 23 23 N 1.31400 * 120.00131 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99685 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47142 * 90.00229 * 24 22 20 26 26 H 1.48504 * 109.46919 * 210.00008 * 24 22 20 27 27 H 1.48501 * 109.47337 * 329.99878 * 24 22 20 28 28 N 1.31610 * 108.26986 * 0.02562 * 6 4 3 29 29 H 1.08996 * 109.47744 * 89.99866 * 1 2 3 30 30 H 1.09007 * 109.47127 * 209.99950 * 1 2 3 31 31 H 1.09001 * 109.47009 * 329.99772 * 1 2 3 32 32 H 1.08003 * 126.41305 * 359.69946 * 3 2 1 33 33 H 1.08993 * 109.46961 * 203.42275 * 10 9 7 34 34 H 1.08997 * 109.46853 * 323.42392 * 10 9 7 35 35 H 1.08998 * 109.47005 * 184.99601 * 11 10 9 36 36 H 1.08993 * 109.47054 * 305.00212 * 11 10 9 37 37 H 0.96701 * 113.99783 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47510 * 210.00488 * 13 9 7 39 39 H 1.09004 * 109.46824 * 330.00944 * 13 9 7 40 40 H 1.09000 * 109.47129 * 300.00928 * 14 13 9 41 41 H 1.09002 * 109.46847 * 59.99927 * 14 13 9 42 42 H 1.00899 * 111.00264 * 56.04674 * 15 14 13 43 43 H 1.08999 * 109.47342 * 300.00777 * 16 15 14 44 44 H 1.09006 * 109.47019 * 59.99681 * 16 15 14 45 45 H 0.97007 * 120.00052 * 0.02562 * 19 17 16 46 46 H 0.97003 * 120.00277 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5832 0.6659 0.0060 5 1 4.3788 1.2208 0.0071 6 6 3.5464 -0.7003 0.0090 7 6 4.7174 -1.5957 0.0151 8 8 5.8366 -1.1338 -0.0976 9 7 4.5475 -2.9263 0.1457 10 6 3.1965 -3.4908 0.1972 11 6 2.6666 -3.6761 -1.2261 12 8 3.4586 -4.6523 -1.9058 13 6 5.7137 -3.8084 0.2360 14 6 6.1155 -3.9740 1.7030 15 7 7.2852 -4.8579 1.7936 16 6 7.6999 -5.0409 3.1909 17 6 8.8992 -5.9518 3.2439 18 8 9.3632 -6.4038 2.2184 19 7 9.4569 -6.2635 4.4306 20 6 10.5482 -7.0917 4.4787 21 1 10.9615 -7.4942 3.5657 22 6 11.1228 -7.4135 5.7023 23 7 10.6198 -6.9243 6.8133 24 14 12.6104 -8.5415 5.7677 25 1 13.8511 -7.7303 5.6795 26 1 12.6029 -9.2970 7.0462 27 1 12.5598 -9.4941 4.6296 28 7 2.2861 -1.0792 0.0044 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9710 2.1277 -0.0046 33 1 3.2251 -4.4559 0.7029 34 1 2.5404 -2.8134 0.7438 35 1 1.6304 -4.0120 -1.1872 36 1 2.7214 -2.7278 -1.7606 37 1 3.1787 -4.8215 -2.8159 38 1 5.4659 -4.7827 -0.1851 39 1 6.5431 -3.3722 -0.3208 40 1 6.3632 -2.9996 2.1242 41 1 5.2860 -4.4101 2.2598 42 1 8.0474 -4.5077 1.2329 43 1 7.9581 -4.0741 3.6229 44 1 6.8814 -5.4850 3.7576 45 1 9.0860 -5.9018 5.2507 46 1 11.0207 -7.1492 7.6675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279846174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:23 Heat of formation + Delta-G solvation = -46.901815 kcal Electronic energy + Delta-G solvation = -28914.991009 eV Core-core repulsion = 24648.340159 eV Total energy + Delta-G solvation = -4266.650850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.76826 -39.90606 -38.21866 -37.36130 -36.07387 -34.91490 -33.79350 -33.62531 -31.90145 -31.17753 -30.19155 -28.70495 -27.50678 -26.00270 -24.37515 -23.53196 -22.89647 -21.89406 -20.80629 -20.12025 -19.16916 -18.25628 -17.82961 -17.62961 -16.77574 -16.57442 -16.22464 -15.97995 -15.45869 -15.09420 -14.67943 -14.53641 -14.45371 -14.35915 -13.88611 -13.72138 -13.64340 -13.38378 -13.34883 -13.17633 -12.91502 -12.81417 -12.59098 -12.17110 -11.98485 -11.64686 -11.46166 -11.41877 -11.04312 -10.88817 -10.68090 -10.55790 -10.35424 -10.23678 -10.16941 -10.11443 -9.46108 -9.04030 -8.77774 -8.38765 -8.00538 -7.90718 -6.36944 -3.77483 0.96251 2.10516 2.16487 3.00481 3.01050 3.21646 3.29788 3.36358 3.71604 3.96873 4.12842 4.19519 4.34923 4.52312 4.56492 4.74827 4.97635 5.02808 5.10193 5.21763 5.24726 5.25338 5.26914 5.28560 5.35027 5.42166 5.49986 5.53914 5.63777 5.77225 5.83685 5.94872 6.00875 6.06956 6.18393 6.29784 6.38759 6.67874 7.04828 7.25376 7.32025 7.47356 7.59954 7.71305 7.81413 8.11539 8.66728 9.22887 9.59689 10.11481 10.80939 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.001865 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.567558 B =15006.185940 C =15542.339720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.005 4.005 3 C -0.024 4.024 4 N -0.523 5.523 5 H 0.431 0.569 6 C 0.155 3.845 7 C 0.598 3.402 8 O -0.539 6.539 9 N -0.574 5.574 10 C 0.101 3.899 11 C 0.071 3.929 12 O -0.572 6.572 13 C 0.122 3.878 14 C 0.046 3.954 15 N -0.665 5.665 16 C 0.053 3.947 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.269 1.269 28 N -0.440 5.440 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.186 0.814 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.376 0.624 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.351 0.649 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.589 17.452 -13.385 32.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.138 4.138 3 C -0.163 4.163 4 N -0.124 5.124 5 H 0.271 0.729 6 C -0.107 4.107 7 C 0.383 3.617 8 O -0.415 6.415 9 N -0.305 5.305 10 C -0.022 4.022 11 C -0.008 4.008 12 O -0.377 6.377 13 C -0.001 4.001 14 C -0.085 4.085 15 N -0.298 5.298 16 C -0.080 4.080 17 C 0.228 3.772 18 O -0.466 6.466 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 N -0.164 5.164 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.203 0.797 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.222 0.778 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.170 0.830 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.891 15.900 -13.367 31.659 hybrid contribution 1.113 1.811 0.378 2.159 sum -22.778 17.711 -12.989 31.642 Atomic orbital electron populations 1.20064 0.86930 1.03100 1.02492 1.21014 0.97090 0.88181 1.07521 1.22753 0.82931 1.01137 1.09456 1.42894 1.09327 1.07545 1.52623 0.72896 1.22672 0.93776 0.82340 1.11869 1.16596 0.85474 0.82030 0.77550 1.90865 1.24062 1.75619 1.50997 1.47479 1.08401 1.04698 1.69922 1.22214 0.82750 1.00812 0.96402 1.22509 0.93607 0.91093 0.93556 1.86538 1.59147 1.61794 1.30233 1.21529 0.87395 0.94587 0.96552 1.22276 0.94751 0.94870 0.96559 1.59977 1.09153 1.50855 1.09805 1.21656 0.97965 0.98424 0.89975 1.19802 0.86516 0.86245 0.84679 1.90524 1.65130 1.57235 1.33678 1.41858 1.28045 1.43504 1.06757 1.19713 1.05330 1.23205 0.94515 0.87899 1.25264 0.99504 0.98536 0.94742 1.69612 1.41708 1.45138 0.97973 0.85850 0.80892 0.79834 0.77656 1.20470 1.20958 1.19394 1.70267 0.99180 1.29979 1.16983 0.91190 0.90811 0.91092 0.79734 0.89662 0.85603 0.92774 0.93487 0.77803 0.87996 0.89744 0.95416 0.90975 0.82974 0.93896 0.89583 0.77468 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.42 36.00 0.38 0.09 16 2 C 0.00 -0.03 7.07 -83.00 -0.59 -0.62 16 3 C -0.02 -0.14 11.91 -16.93 -0.20 -0.34 16 4 N -0.52 -3.98 6.15 -10.78 -0.07 -4.04 16 5 H 0.43 2.57 8.96 -40.82 -0.37 2.20 16 6 C 0.15 1.60 7.47 -154.53 -1.15 0.45 16 7 C 0.60 7.65 7.62 -12.53 -0.10 7.56 16 8 O -0.54 -8.37 16.65 5.27 0.09 -8.28 16 9 N -0.57 -6.83 2.44 -174.96 -0.43 -7.25 16 10 C 0.10 0.98 5.37 -4.03 -0.02 0.96 16 11 C 0.07 0.62 6.79 37.16 0.25 0.87 16 12 O -0.57 -5.59 13.30 -35.23 -0.47 -6.06 16 13 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 14 C 0.05 0.66 6.01 -3.82 -0.02 0.64 16 15 N -0.66 -11.73 6.12 -115.06 -0.70 -12.43 16 16 C 0.05 1.00 6.17 -4.98 -0.03 0.97 16 17 C 0.44 10.92 7.82 -10.99 -0.09 10.83 16 18 O -0.58 -16.41 15.78 5.55 0.09 -16.32 16 19 N -0.56 -14.83 5.29 -10.96 -0.06 -14.89 16 20 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 21 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 24 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 N -0.44 -4.04 6.51 -7.50 -0.05 -4.09 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.19 0.37 8.06 -52.48 -0.42 -0.05 16 33 H 0.09 0.81 8.02 -51.93 -0.42 0.39 16 34 H 0.13 1.17 5.36 -51.93 -0.28 0.89 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.45 7.17 -51.93 -0.37 0.08 16 37 H 0.38 2.12 9.12 45.56 0.42 2.53 16 38 H 0.10 1.39 7.76 -51.93 -0.40 0.99 16 39 H 0.08 1.23 7.37 -51.93 -0.38 0.85 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.35 6.44 8.43 -39.29 -0.33 6.11 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.39 9.83 7.90 -40.82 -0.32 9.50 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -36.39 392.41 -7.59 -43.98 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -5.77 Total: 16.56 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: -1.84 Total: 14.78 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.58 Total: -67.08 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.29 Total: -30.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.39 -7.59 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279846174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.923 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds