Wall clock time and date at job start Tue Mar 31 2020 23:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.35566 * 125.82754 * 2 1 4 4 N 1.35395 * 107.16320 * 179.73406 * 3 2 1 5 5 H 0.97011 * 126.43983 * 179.97438 * 4 3 2 6 6 C 1.36664 * 107.12530 * 0.02562 * 4 3 2 7 7 C 1.47407 * 125.86801 * 179.97438 * 6 4 3 8 8 O 1.21609 * 119.99967 * 353.70510 * 7 6 4 9 9 N 1.34772 * 120.00221 * 173.69602 * 7 6 4 10 10 C 1.46507 * 119.99931 * 3.83058 * 9 7 6 11 11 C 1.53006 * 109.46965 * 83.42100 * 10 9 7 12 12 O 1.42907 * 109.46819 * 64.99990 * 11 10 9 13 13 C 1.46501 * 120.00462 * 183.82409 * 9 7 6 14 14 C 1.53004 * 109.46922 * 90.00216 * 13 9 7 15 15 N 1.46896 * 109.47320 * 180.02562 * 14 13 9 16 16 C 1.46895 * 111.00354 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47400 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99885 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00022 * 179.97438 * 17 16 15 20 20 C 1.37090 * 120.00122 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00400 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00053 * 180.02562 * 20 19 17 23 23 N 1.31400 * 120.00131 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99685 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47142 * 90.00229 * 24 22 20 26 26 H 1.48504 * 109.46919 * 210.00008 * 24 22 20 27 27 H 1.48501 * 109.47337 * 329.99878 * 24 22 20 28 28 N 1.31610 * 108.26986 * 0.02562 * 6 4 3 29 29 H 1.08996 * 109.47744 * 89.99866 * 1 2 3 30 30 H 1.09007 * 109.47127 * 209.99950 * 1 2 3 31 31 H 1.09001 * 109.47009 * 329.99772 * 1 2 3 32 32 H 1.08003 * 126.41305 * 359.69946 * 3 2 1 33 33 H 1.08993 * 109.46961 * 203.42275 * 10 9 7 34 34 H 1.08997 * 109.46853 * 323.42392 * 10 9 7 35 35 H 1.08998 * 109.47005 * 184.99601 * 11 10 9 36 36 H 1.08993 * 109.47054 * 305.00212 * 11 10 9 37 37 H 0.96701 * 113.99783 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47510 * 210.00488 * 13 9 7 39 39 H 1.09004 * 109.46824 * 330.00944 * 13 9 7 40 40 H 1.09000 * 109.47129 * 300.00928 * 14 13 9 41 41 H 1.09002 * 109.46847 * 59.99927 * 14 13 9 42 42 H 1.00899 * 111.00264 * 56.04674 * 15 14 13 43 43 H 1.08999 * 109.47342 * 300.00777 * 16 15 14 44 44 H 1.09006 * 109.47019 * 59.99681 * 16 15 14 45 45 H 0.97007 * 120.00052 * 0.02562 * 19 17 16 46 46 H 0.97003 * 120.00277 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5832 0.6659 0.0060 5 1 4.3788 1.2208 0.0071 6 6 3.5464 -0.7003 0.0090 7 6 4.7174 -1.5957 0.0151 8 8 5.8366 -1.1338 -0.0976 9 7 4.5475 -2.9263 0.1457 10 6 3.1965 -3.4908 0.1972 11 6 2.6666 -3.6761 -1.2261 12 8 3.4586 -4.6523 -1.9058 13 6 5.7137 -3.8084 0.2360 14 6 6.1155 -3.9740 1.7030 15 7 7.2852 -4.8579 1.7936 16 6 7.6999 -5.0409 3.1909 17 6 8.8992 -5.9518 3.2439 18 8 9.3632 -6.4038 2.2184 19 7 9.4569 -6.2635 4.4306 20 6 10.5482 -7.0917 4.4787 21 1 10.9615 -7.4942 3.5657 22 6 11.1228 -7.4135 5.7023 23 7 10.6198 -6.9243 6.8133 24 14 12.6104 -8.5415 5.7677 25 1 13.8511 -7.7303 5.6795 26 1 12.6029 -9.2970 7.0462 27 1 12.5598 -9.4941 4.6296 28 7 2.2861 -1.0792 0.0044 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9710 2.1277 -0.0046 33 1 3.2251 -4.4559 0.7029 34 1 2.5404 -2.8134 0.7438 35 1 1.6304 -4.0120 -1.1872 36 1 2.7214 -2.7278 -1.7606 37 1 3.1787 -4.8215 -2.8159 38 1 5.4659 -4.7827 -0.1851 39 1 6.5431 -3.3722 -0.3208 40 1 6.3632 -2.9996 2.1242 41 1 5.2860 -4.4101 2.2598 42 1 8.0474 -4.5077 1.2329 43 1 7.9581 -4.0741 3.6229 44 1 6.8814 -5.4850 3.7576 45 1 9.0860 -5.9018 5.2507 46 1 11.0207 -7.1492 7.6675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279846174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:23 Heat of formation + Delta-G solvation = -77.615374 kcal Electronic energy + Delta-G solvation = -28916.322849 eV Core-core repulsion = 24648.340159 eV Total energy + Delta-G solvation = -4267.982690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.36476 -40.84748 -40.15591 -38.20978 -37.26961 -36.16188 -35.71721 -34.20137 -33.30208 -32.58549 -31.16319 -29.68288 -28.32295 -27.39765 -25.85405 -24.58163 -23.81628 -22.89092 -21.38272 -21.18042 -20.77677 -19.92379 -19.02014 -18.36397 -17.91954 -17.58856 -17.42376 -17.04955 -16.84484 -16.49142 -15.94088 -15.85144 -15.48454 -15.38634 -15.09121 -15.02361 -14.80603 -14.50495 -14.17986 -13.91593 -13.82638 -13.69588 -13.53077 -13.49397 -13.28250 -12.99621 -12.91216 -12.78263 -12.42699 -12.41896 -12.12015 -12.05407 -11.55406 -11.52050 -11.23417 -10.89928 -10.81696 -10.40834 -10.03313 -9.90129 -9.45358 -9.36687 -8.47545 -5.96587 0.25715 1.37750 1.39344 1.41635 1.53508 1.54840 2.02507 2.21422 2.26452 2.33249 2.92486 3.06364 3.19142 3.48523 3.55454 3.77892 3.98001 4.07307 4.13110 4.25431 4.29496 4.34798 4.39245 4.43528 4.46349 4.55804 4.58651 4.70607 4.80754 4.86791 4.94114 5.00502 5.01560 5.06249 5.22507 5.39360 5.40782 5.72026 5.81434 6.04229 6.13850 6.16460 6.26588 6.58373 6.66801 6.94443 6.94705 7.10948 7.53697 8.09022 8.69922 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.001865 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.567558 B =15006.185940 C =15542.339720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.026 4.026 3 C 0.001 3.999 4 N -0.519 5.519 5 H 0.437 0.563 6 C 0.114 3.886 7 C 0.594 3.406 8 O -0.579 6.579 9 N -0.573 5.573 10 C 0.100 3.900 11 C 0.078 3.922 12 O -0.593 6.593 13 C 0.132 3.868 14 C 0.057 3.943 15 N -0.675 5.675 16 C 0.066 3.934 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.273 1.273 28 N -0.441 5.441 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.228 0.772 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.392 0.608 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.086 0.914 42 H 0.344 0.656 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.601 18.609 -12.928 34.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 C -0.139 4.139 4 N -0.121 5.121 5 H 0.278 0.722 6 C -0.144 4.144 7 C 0.382 3.618 8 O -0.459 6.459 9 N -0.303 5.303 10 C -0.022 4.022 11 C -0.001 4.001 12 O -0.402 6.402 13 C 0.009 3.991 14 C -0.073 4.073 15 N -0.308 5.308 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.819 3.181 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.198 1.198 28 N -0.166 5.166 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.244 0.756 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.241 0.759 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.105 0.895 42 H 0.162 0.838 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.942 17.055 -12.901 33.620 hybrid contribution 1.606 1.543 0.196 2.236 sum -24.336 18.598 -12.705 33.160 Atomic orbital electron populations 1.20142 0.84878 1.03955 1.03238 1.21636 0.98488 0.88023 1.07814 1.23513 0.81682 1.02732 1.05949 1.42996 1.10434 1.06775 1.51866 0.72231 1.22161 0.93304 0.83138 1.15832 1.16935 0.85847 0.82370 0.76679 1.90826 1.25735 1.76303 1.53009 1.47507 1.08684 1.04531 1.69601 1.22365 0.81633 1.00823 0.97375 1.22449 0.94415 0.90590 0.92626 1.86491 1.59973 1.61972 1.31718 1.21272 0.87672 0.94564 0.95642 1.22239 0.93690 0.94036 0.97327 1.59988 1.09753 1.52121 1.08916 1.21530 0.95894 0.97926 0.91258 1.20781 0.87284 0.85877 0.83532 1.90492 1.66633 1.58791 1.34909 1.41915 1.27908 1.43579 1.07496 1.19689 1.07185 1.25255 0.94348 0.90271 1.26080 1.01881 0.99430 0.93971 1.69671 1.42581 1.45415 0.98415 0.84895 0.77425 0.77879 0.77920 1.19624 1.19382 1.19767 1.70178 0.98906 1.31176 1.16324 0.90437 0.91301 0.88936 0.75590 0.89452 0.85031 0.90611 0.94408 0.75893 0.88280 0.91524 0.95803 0.89535 0.83754 0.91953 0.87371 0.76938 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.42 71.23 0.74 0.38 16 2 C -0.03 -0.30 7.07 41.74 0.30 -0.01 16 3 C 0.00 0.01 11.91 83.52 0.99 1.00 16 4 N -0.52 -7.22 6.15 -188.03 -1.16 -8.38 16 5 H 0.44 4.84 8.96 -92.70 -0.83 4.01 16 6 C 0.11 2.32 7.47 136.28 1.02 3.34 16 7 C 0.59 15.59 7.62 86.66 0.66 16.25 16 8 O -0.58 -18.81 16.65 -4.06 -0.07 -18.88 16 9 N -0.57 -13.81 2.44 -825.69 -2.01 -15.82 16 10 C 0.10 1.88 5.37 86.38 0.46 2.34 16 11 C 0.08 1.29 6.79 71.98 0.49 1.78 16 12 O -0.59 -11.30 13.30 -148.98 -1.98 -13.28 16 13 C 0.13 3.59 5.67 86.38 0.49 4.08 16 14 C 0.06 1.62 6.01 86.31 0.52 2.14 16 15 N -0.68 -23.86 6.12 -517.94 -3.17 -27.04 16 16 C 0.07 2.48 6.17 85.56 0.53 3.00 16 17 C 0.44 21.96 7.82 87.66 0.69 22.65 16 18 O -0.62 -36.10 15.78 -3.07 -0.05 -36.15 16 19 N -0.57 -30.51 5.29 -306.99 -1.62 -32.13 16 20 C -0.34 -19.63 9.68 84.04 0.81 -18.81 16 21 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 24 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 28 N -0.44 -7.58 6.51 -177.64 -1.16 -8.74 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.23 -0.15 8.06 -2.91 -0.02 -0.18 16 33 H 0.09 1.59 8.02 -2.39 -0.02 1.57 16 34 H 0.13 2.34 5.36 -2.39 -0.01 2.33 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.04 0.70 7.17 -2.39 -0.02 0.69 16 37 H 0.39 4.17 9.12 -74.06 -0.68 3.49 16 38 H 0.10 2.75 7.76 -2.39 -0.02 2.73 16 39 H 0.07 2.06 7.37 -2.38 -0.02 2.04 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.34 12.97 8.43 -89.69 -0.76 12.21 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 45 H 0.40 20.04 7.90 -92.70 -0.73 19.31 16 46 H 0.28 14.29 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -80.14 392.41 -2.67 -82.81 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -1.93 Total: 44.18 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: 8.16 Total: 37.86 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -8.84 Total: -142.48 kcal Atomic # 8 Polarization: -66.21 SS G_CDS: -2.10 Total: -68.31 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.14 -2.67 -82.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279846174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.192 kcal (2) G-P(sol) polarization free energy of solvation -80.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds