Wall clock time and date at job start Tue Mar 31 2020 22:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38172 * 119.55329 * 2 1 4 4 C 1.39790 * 119.00154 * 180.23179 * 3 2 1 5 5 C 1.48148 * 120.92665 * 179.77953 * 4 3 2 6 6 O 1.21520 * 119.99547 * 359.71755 * 5 4 3 7 7 N 1.34776 * 120.00175 * 179.71357 * 5 4 3 8 8 C 1.46503 * 119.99767 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46834 * 180.02562 * 8 7 5 10 10 C 1.38268 * 119.99776 * 255.37479 * 9 8 7 11 11 C 1.38213 * 119.99503 * 179.97438 * 10 9 8 12 12 C 1.38256 * 120.00325 * 359.78987 * 11 10 9 13 13 C 1.38213 * 119.99693 * 0.48897 * 12 11 10 14 14 C 1.38206 * 120.00209 * 75.39846 * 9 8 7 15 15 C 1.50700 * 120.00171 * 359.97438 * 14 9 8 16 16 N 1.46493 * 109.47392 * 178.00628 * 15 14 9 17 17 C 1.46495 * 120.00193 * 273.77735 * 16 15 14 18 18 C 1.36944 * 119.99997 * 93.77761 * 16 15 14 19 19 H 1.08001 * 120.00011 * 21.82175 * 18 16 15 20 20 C 1.38811 * 120.00015 * 201.81704 * 18 16 15 21 21 N 1.31622 * 119.99947 * 15.24069 * 20 18 16 22 22 Si 1.86801 * 120.00005 * 195.23815 * 20 18 16 23 23 H 1.48504 * 109.46817 * 60.00256 * 22 20 18 24 24 H 1.48500 * 109.47157 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47026 * 300.00300 * 22 20 18 26 26 C 1.39844 * 118.15406 * 359.50335 * 4 3 2 27 27 C 1.38126 * 119.00226 * 0.25319 * 26 4 3 28 28 N 1.31797 * 119.55206 * 179.72954 * 2 1 3 29 29 H 1.08999 * 109.46853 * 270.27273 * 1 2 3 30 30 H 1.09003 * 109.47293 * 30.27202 * 1 2 3 31 31 H 1.08994 * 109.47318 * 150.27878 * 1 2 3 32 32 H 1.08003 * 120.49976 * 0.02562 * 3 2 1 33 33 H 0.96993 * 119.99984 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.46676 * 60.00746 * 8 7 5 35 35 H 1.08995 * 109.47648 * 300.00800 * 8 7 5 36 36 H 1.07992 * 120.00007 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.99382 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00091 * 180.25497 * 12 11 10 39 39 H 1.08004 * 119.99892 * 179.76583 * 13 12 11 40 40 H 1.09000 * 109.46999 * 298.00942 * 15 14 9 41 41 H 1.09006 * 109.47199 * 58.00193 * 15 14 9 42 42 H 1.09001 * 109.47582 * 93.49524 * 17 16 15 43 43 H 1.09000 * 109.47243 * 213.49841 * 17 16 15 44 44 H 1.09001 * 109.47115 * 333.49555 * 17 16 15 45 45 H 0.96996 * 120.00019 * 179.97438 * 21 20 18 46 46 H 1.07991 * 120.50175 * 180.23131 * 26 4 3 47 47 H 1.07999 * 119.55246 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0049 5 6 4.3599 2.4520 -0.0100 6 8 3.7796 3.5196 -0.0151 7 7 5.7073 2.4173 -0.0089 8 6 6.4722 3.6667 -0.0145 9 6 7.9462 3.3533 -0.0126 10 6 8.6849 3.5107 1.1456 11 6 10.0367 3.2227 1.1474 12 6 10.6493 2.7731 -0.0076 13 6 9.9120 2.6213 -1.1667 14 6 8.5597 2.9090 -1.1686 15 6 7.7546 2.7374 -2.4309 16 7 8.6367 2.3056 -3.5178 17 6 9.3611 3.3006 -4.3125 18 6 8.7842 0.9719 -3.7911 19 1 8.0262 0.2694 -3.4776 20 6 9.9080 0.5228 -4.4710 21 7 10.9608 1.3038 -4.5902 22 14 9.9262 -1.1898 -5.2168 23 1 8.8326 -1.3067 -6.2146 24 1 11.2322 -1.4257 -5.8830 25 1 9.7284 -2.1984 -4.1451 26 6 4.2343 -0.0507 0.0010 27 6 3.4741 -1.2040 0.0061 28 7 2.1571 -1.1465 0.0054 29 1 -0.3633 0.0049 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6494 2.1378 0.0004 33 1 6.1704 1.5651 -0.0052 34 1 6.2230 4.2492 0.8726 35 1 6.2242 4.2406 -0.9074 36 1 8.2054 3.8578 2.0488 37 1 10.6135 3.3452 2.0522 38 1 11.7047 2.5441 -0.0050 39 1 10.3914 2.2737 -2.0700 40 1 6.9819 1.9858 -2.2696 41 1 7.2885 3.6864 -2.6964 42 1 10.3527 3.4539 -3.8867 43 1 9.4572 2.9460 -5.3387 44 1 8.8123 4.2423 -4.3035 45 1 11.7462 0.9899 -5.0650 46 1 5.3129 -0.1053 0.0012 47 1 3.9653 -2.1658 0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280334220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:00 Heat of formation + Delta-G solvation = 49.596794 kcal Electronic energy + Delta-G solvation = -28839.575056 eV Core-core repulsion = 24987.957963 eV Total energy + Delta-G solvation = -3851.617093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.80775 -39.57179 -38.70613 -35.61592 -35.00928 -33.43228 -32.59448 -31.97459 -30.93839 -29.92383 -27.88212 -26.77472 -26.05969 -25.54312 -23.95716 -22.98793 -22.20620 -20.92679 -20.42934 -20.01742 -18.09962 -16.93077 -16.79630 -16.12151 -15.78124 -15.63575 -15.61649 -15.08762 -14.93308 -14.61517 -14.32470 -14.17327 -13.88294 -13.69087 -13.36101 -13.23795 -13.00116 -12.76066 -12.60029 -12.51887 -12.41286 -12.19417 -11.89077 -11.60722 -11.37191 -10.92025 -10.82708 -10.57376 -10.51989 -10.38813 -10.32327 -10.10582 -10.06705 -9.90908 -9.68524 -9.20017 -9.11082 -8.62417 -8.36122 -8.07574 -6.90823 -5.83266 -3.28327 0.53858 0.86065 1.65632 1.95170 2.77608 3.11504 3.33066 3.39672 3.40686 3.64123 4.03653 4.27432 4.42736 4.45397 4.50368 4.75849 4.81921 4.90312 5.17416 5.20176 5.26206 5.27218 5.33260 5.39948 5.49014 5.50735 5.54566 5.65314 5.73824 5.76989 5.79185 5.86287 5.97176 6.19608 6.26629 6.33104 6.39837 6.40956 6.51475 6.69111 6.70091 6.87027 7.15608 7.29427 7.31697 7.42973 7.62642 7.65198 7.70825 7.74363 8.04960 8.29249 9.13554 9.75845 10.24947 11.21877 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.003577 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.571214 B = 7826.374941 C = 9723.375327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.116 4.116 4 C -0.080 4.080 5 C 0.557 3.443 6 O -0.534 6.534 7 N -0.710 5.710 8 C 0.168 3.832 9 C -0.130 4.130 10 C -0.114 4.114 11 C -0.140 4.140 12 C -0.119 4.119 13 C -0.086 4.086 14 C -0.076 4.076 15 C 0.181 3.819 16 N -0.597 5.597 17 C 0.159 3.841 18 C -0.257 4.257 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C -0.146 4.146 27 C 0.103 3.897 28 N -0.472 5.472 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.163 0.837 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.045 0.955 44 H -0.002 1.002 45 H 0.255 0.745 46 H 0.141 0.859 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.683 0.464 11.884 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.017 4.017 3 C -0.137 4.137 4 C -0.091 4.091 5 C 0.343 3.657 6 O -0.412 6.412 7 N -0.361 5.361 8 C 0.046 3.954 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.158 4.158 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.079 4.079 15 C 0.054 3.946 16 N -0.319 5.319 17 C 0.015 3.985 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 C -0.166 4.166 27 C -0.054 4.054 28 N -0.183 5.183 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.180 0.820 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.065 0.935 46 H 0.159 0.841 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.386 0.469 11.748 17.078 hybrid contribution 1.237 -0.602 -0.317 1.412 sum -11.149 -0.133 11.431 15.968 Atomic orbital electron populations 1.20728 0.88336 1.03768 1.03239 1.21313 0.97314 0.87845 0.95207 1.22100 0.93256 1.00070 0.98287 1.20390 0.94499 0.93579 1.00672 1.18157 0.82252 0.88380 0.76897 1.90769 1.69935 1.30734 1.49751 1.46027 1.05496 1.10646 1.73937 1.20159 0.87062 0.85460 1.02733 1.19616 0.94132 1.05004 0.94362 1.20829 0.94283 1.01316 0.96800 1.20984 0.94758 1.01981 0.98095 1.21301 0.99791 0.99352 0.93317 1.21813 0.93747 0.95436 0.99416 1.21304 0.95691 0.95078 0.95850 1.19916 0.92098 0.97688 0.84945 1.43932 1.51972 1.03466 1.32553 1.20845 0.94160 0.87708 0.95794 1.19119 1.02152 0.83530 1.33818 0.91526 1.24931 0.94932 0.97708 1.01693 1.70020 1.03525 1.36453 1.45018 0.86381 0.76811 0.84255 0.79377 1.21101 1.21623 1.20958 1.22406 1.01841 0.92655 0.99705 1.22750 0.89060 0.98571 0.94973 1.67403 1.10346 1.29473 1.11038 0.90259 0.90426 0.90250 0.83537 0.75961 0.90930 0.90303 0.87003 0.87051 0.86818 0.81981 0.92247 0.93146 0.95152 0.93600 0.98337 0.93531 0.84080 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.16 36.01 0.37 -0.42 16 2 C 0.12 1.31 6.78 -82.63 -0.56 0.75 16 3 C -0.12 -1.34 9.31 -39.03 -0.36 -1.70 16 4 C -0.08 -0.99 5.91 -104.65 -0.62 -1.61 16 5 C 0.56 7.77 7.80 -12.19 -0.10 7.68 16 6 O -0.53 -8.93 16.45 5.35 0.09 -8.84 16 7 N -0.71 -9.17 4.98 -62.33 -0.31 -9.48 16 8 C 0.17 2.29 5.15 -5.19 -0.03 2.26 16 9 C -0.13 -1.96 5.25 -104.62 -0.55 -2.51 16 10 C -0.11 -1.59 9.67 -39.58 -0.38 -1.97 16 11 C -0.14 -2.03 10.05 -39.58 -0.40 -2.42 16 12 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 13 C -0.09 -1.70 9.14 -39.58 -0.36 -2.07 16 14 C -0.08 -1.37 5.88 -104.63 -0.62 -1.98 16 15 C 0.18 3.52 5.00 -5.20 -0.03 3.49 16 16 N -0.60 -13.95 1.73 -182.51 -0.32 -14.26 16 17 C 0.16 3.73 8.61 59.84 0.52 4.25 16 18 C -0.26 -6.55 9.17 -15.06 -0.14 -6.69 16 19 H 0.07 1.68 7.84 -52.49 -0.41 1.26 16 20 C 0.01 0.16 5.04 -17.43 -0.09 0.07 16 21 N -0.91 -24.51 10.78 55.49 0.60 -23.91 16 22 Si 0.90 20.89 29.58 -169.99 -5.03 15.86 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.15 -1.56 9.62 -39.02 -0.38 -1.94 16 27 C 0.10 1.09 11.17 -17.59 -0.20 0.89 16 28 N -0.47 -5.57 10.25 -9.52 -0.10 -5.67 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.15 1.57 7.74 -52.48 -0.41 1.17 16 33 H 0.40 4.81 6.61 -40.82 -0.27 4.54 16 34 H 0.07 0.93 7.96 -51.93 -0.41 0.51 16 35 H 0.08 1.15 7.22 -51.93 -0.37 0.77 16 36 H 0.11 1.30 8.00 -52.49 -0.42 0.88 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.16 3.85 5.76 -52.48 -0.30 3.55 16 40 H 0.06 1.12 7.51 -51.93 -0.39 0.73 16 41 H 0.05 0.94 7.30 -51.93 -0.38 0.56 16 42 H 0.03 0.75 6.81 -51.93 -0.35 0.40 16 43 H 0.05 1.16 7.21 -51.93 -0.37 0.78 16 44 H 0.00 -0.04 7.89 -51.93 -0.41 -0.45 16 45 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.14 1.28 6.54 -52.49 -0.34 0.94 16 47 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -29.92 390.07 -10.01 -39.93 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.52 Total: 6.81 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -4.31 Total: -6.31 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.13 Total: -53.33 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.92 -10.01 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280334220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.530 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds