Wall clock time and date at job start Tue Mar 31 2020 22:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38172 * 119.55329 * 2 1 4 4 C 1.39790 * 119.00154 * 180.23179 * 3 2 1 5 5 C 1.48148 * 120.92665 * 179.77953 * 4 3 2 6 6 O 1.21520 * 119.99547 * 359.71755 * 5 4 3 7 7 N 1.34776 * 120.00175 * 179.71357 * 5 4 3 8 8 C 1.46503 * 119.99767 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46834 * 180.02562 * 8 7 5 10 10 C 1.38268 * 119.99776 * 255.37479 * 9 8 7 11 11 C 1.38213 * 119.99503 * 179.97438 * 10 9 8 12 12 C 1.38256 * 120.00325 * 359.78987 * 11 10 9 13 13 C 1.38213 * 119.99693 * 0.48897 * 12 11 10 14 14 C 1.38206 * 120.00209 * 75.39846 * 9 8 7 15 15 C 1.50700 * 120.00171 * 359.97438 * 14 9 8 16 16 N 1.46493 * 109.47392 * 178.00628 * 15 14 9 17 17 C 1.46495 * 120.00193 * 273.77735 * 16 15 14 18 18 C 1.36944 * 119.99997 * 93.77761 * 16 15 14 19 19 H 1.08001 * 120.00011 * 21.82175 * 18 16 15 20 20 C 1.38811 * 120.00015 * 201.81704 * 18 16 15 21 21 N 1.31622 * 119.99947 * 15.24069 * 20 18 16 22 22 Si 1.86801 * 120.00005 * 195.23815 * 20 18 16 23 23 H 1.48504 * 109.46817 * 60.00256 * 22 20 18 24 24 H 1.48500 * 109.47157 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47026 * 300.00300 * 22 20 18 26 26 C 1.39844 * 118.15406 * 359.50335 * 4 3 2 27 27 C 1.38126 * 119.00226 * 0.25319 * 26 4 3 28 28 N 1.31797 * 119.55206 * 179.72954 * 2 1 3 29 29 H 1.08999 * 109.46853 * 270.27273 * 1 2 3 30 30 H 1.09003 * 109.47293 * 30.27202 * 1 2 3 31 31 H 1.08994 * 109.47318 * 150.27878 * 1 2 3 32 32 H 1.08003 * 120.49976 * 0.02562 * 3 2 1 33 33 H 0.96993 * 119.99984 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.46676 * 60.00746 * 8 7 5 35 35 H 1.08995 * 109.47648 * 300.00800 * 8 7 5 36 36 H 1.07992 * 120.00007 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.99382 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00091 * 180.25497 * 12 11 10 39 39 H 1.08004 * 119.99892 * 179.76583 * 13 12 11 40 40 H 1.09000 * 109.46999 * 298.00942 * 15 14 9 41 41 H 1.09006 * 109.47199 * 58.00193 * 15 14 9 42 42 H 1.09001 * 109.47582 * 93.49524 * 17 16 15 43 43 H 1.09000 * 109.47243 * 213.49841 * 17 16 15 44 44 H 1.09001 * 109.47115 * 333.49555 * 17 16 15 45 45 H 0.96996 * 120.00019 * 179.97438 * 21 20 18 46 46 H 1.07991 * 120.50175 * 180.23131 * 26 4 3 47 47 H 1.07999 * 119.55246 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0049 5 6 4.3599 2.4520 -0.0100 6 8 3.7796 3.5196 -0.0151 7 7 5.7073 2.4173 -0.0089 8 6 6.4722 3.6667 -0.0145 9 6 7.9462 3.3533 -0.0126 10 6 8.6849 3.5107 1.1456 11 6 10.0367 3.2227 1.1474 12 6 10.6493 2.7731 -0.0076 13 6 9.9120 2.6213 -1.1667 14 6 8.5597 2.9090 -1.1686 15 6 7.7546 2.7374 -2.4309 16 7 8.6367 2.3056 -3.5178 17 6 9.3611 3.3006 -4.3125 18 6 8.7842 0.9719 -3.7911 19 1 8.0262 0.2694 -3.4776 20 6 9.9080 0.5228 -4.4710 21 7 10.9608 1.3038 -4.5902 22 14 9.9262 -1.1898 -5.2168 23 1 8.8326 -1.3067 -6.2146 24 1 11.2322 -1.4257 -5.8830 25 1 9.7284 -2.1984 -4.1451 26 6 4.2343 -0.0507 0.0010 27 6 3.4741 -1.2040 0.0061 28 7 2.1571 -1.1465 0.0054 29 1 -0.3633 0.0049 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6494 2.1378 0.0004 33 1 6.1704 1.5651 -0.0052 34 1 6.2230 4.2492 0.8726 35 1 6.2242 4.2406 -0.9074 36 1 8.2054 3.8578 2.0488 37 1 10.6135 3.3452 2.0522 38 1 11.7047 2.5441 -0.0050 39 1 10.3914 2.2737 -2.0700 40 1 6.9819 1.9858 -2.2696 41 1 7.2885 3.6864 -2.6964 42 1 10.3527 3.4539 -3.8867 43 1 9.4572 2.9460 -5.3387 44 1 8.8123 4.2423 -4.3035 45 1 11.7462 0.9899 -5.0650 46 1 5.3129 -0.1053 0.0012 47 1 3.9653 -2.1658 0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280334220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:59 Heat of formation + Delta-G solvation = 34.106190 kcal Electronic energy + Delta-G solvation = -28840.246779 eV Core-core repulsion = 24987.957963 eV Total energy + Delta-G solvation = -3852.288816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74345 -40.71550 -39.87478 -37.36989 -36.15209 -34.30568 -33.69267 -33.42088 -32.18370 -31.47574 -28.59613 -28.20040 -27.76628 -27.06713 -24.94012 -23.85323 -23.81135 -22.29280 -21.44610 -21.42905 -19.07069 -18.71503 -17.89726 -17.35259 -16.95775 -16.73792 -16.59936 -16.44759 -15.98989 -15.94871 -15.48594 -15.42561 -15.28192 -14.87656 -14.78025 -14.60422 -14.19283 -13.99999 -13.62770 -13.62218 -13.29005 -13.27469 -13.09811 -13.01094 -12.76757 -12.68947 -12.57883 -12.31036 -12.06547 -11.97732 -11.82639 -11.61591 -11.48335 -10.99254 -10.60222 -10.56713 -10.20255 -9.98943 -9.62987 -9.39442 -8.82664 -7.81599 -5.27931 -0.37244 0.04659 0.39980 0.67138 1.47169 1.50031 1.55134 1.76280 2.05674 2.52009 2.77562 3.01584 3.31831 3.33287 3.47944 3.65352 3.69880 3.78349 3.92739 4.01742 4.07343 4.20111 4.38013 4.40791 4.41564 4.54657 4.62721 4.71128 4.72515 4.76263 4.79364 4.80492 4.82263 4.93289 5.02941 5.03520 5.16828 5.21902 5.24251 5.29773 5.38420 5.61576 5.61782 5.65079 5.69073 5.86760 5.98635 6.27168 6.34576 6.36308 6.89062 6.98916 7.15978 7.86049 8.31289 9.21754 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.003577 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.571214 B = 7826.374941 C = 9723.375327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.116 3.884 3 C -0.125 4.125 4 C -0.095 4.095 5 C 0.559 3.441 6 O -0.566 6.566 7 N -0.703 5.703 8 C 0.172 3.828 9 C -0.118 4.118 10 C -0.103 4.103 11 C -0.129 4.129 12 C -0.128 4.128 13 C -0.117 4.117 14 C -0.088 4.088 15 C 0.184 3.816 16 N -0.608 5.608 17 C 0.175 3.825 18 C -0.258 4.258 19 H 0.069 0.931 20 C -0.042 4.042 21 N -0.930 5.930 22 Si 0.958 3.042 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.275 1.275 26 C -0.145 4.145 27 C 0.099 3.901 28 N -0.489 5.489 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.410 0.590 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.009 0.991 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.247 0.753 46 H 0.156 0.844 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.977 0.130 14.196 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.022 4.022 3 C -0.146 4.146 4 C -0.106 4.106 5 C 0.347 3.653 6 O -0.446 6.446 7 N -0.354 5.354 8 C 0.050 3.950 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.146 4.146 12 C -0.146 4.146 13 C -0.135 4.135 14 C -0.091 4.091 15 C 0.058 3.942 16 N -0.330 5.330 17 C 0.030 3.970 18 C -0.388 4.388 19 H 0.087 0.913 20 C -0.238 4.238 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.201 1.201 26 C -0.166 4.166 27 C -0.057 4.057 28 N -0.200 5.200 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.168 0.832 33 H 0.247 0.753 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.056 0.944 46 H 0.174 0.826 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.696 0.124 14.080 19.643 hybrid contribution 1.604 -0.462 -0.951 1.921 sum -12.092 -0.338 13.129 17.852 Atomic orbital electron populations 1.20821 0.86232 1.04533 1.04342 1.21771 0.98780 0.87328 0.94295 1.22233 0.93179 1.00604 0.98584 1.20381 0.94855 0.93366 1.02039 1.18370 0.82350 0.88528 0.76098 1.90749 1.70500 1.31945 1.51404 1.45946 1.05277 1.10746 1.73413 1.20114 0.86089 0.85739 1.03085 1.19637 0.94791 1.03796 0.93655 1.21229 0.94048 0.99466 0.97388 1.21325 0.95227 0.99939 0.98136 1.21394 1.00094 0.99743 0.93377 1.21496 0.94791 0.98178 0.99041 1.20975 0.94947 0.96969 0.96223 1.19948 0.91584 0.97961 0.84734 1.44038 1.52201 1.02821 1.33942 1.20568 0.93698 0.88627 0.94116 1.19371 1.01816 0.84594 1.33039 0.91291 1.25565 0.94870 1.00675 1.02681 1.70181 1.03793 1.37758 1.45890 0.85490 0.76154 0.81067 0.78610 1.21020 1.22376 1.20100 1.22564 1.02627 0.92127 0.99238 1.23201 0.88895 0.99570 0.94083 1.67485 1.11020 1.29934 1.11589 0.88887 0.89057 0.90070 0.83249 0.75284 0.89284 0.91327 0.83444 0.83604 0.86363 0.86563 0.91839 0.92529 0.97322 0.96226 0.95997 0.94352 0.82620 0.79508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.16 71.24 0.72 -0.65 16 2 C 0.12 2.35 6.78 42.55 0.29 2.64 16 3 C -0.13 -2.76 9.31 22.63 0.21 -2.55 16 4 C -0.10 -2.24 5.91 -19.88 -0.12 -2.36 16 5 C 0.56 14.93 7.80 86.88 0.68 15.60 16 6 O -0.57 -18.43 16.45 -3.78 -0.06 -18.49 16 7 N -0.70 -16.88 4.98 -469.41 -2.34 -19.22 16 8 C 0.17 4.31 5.15 85.63 0.44 4.75 16 9 C -0.12 -3.27 5.25 -19.87 -0.10 -3.37 16 10 C -0.10 -2.47 9.67 22.27 0.22 -2.25 16 11 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 12 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 13 C -0.12 -4.68 9.14 22.27 0.20 -4.48 16 14 C -0.09 -3.13 5.88 -19.87 -0.12 -3.25 16 15 C 0.18 7.14 5.00 85.63 0.43 7.56 16 16 N -0.61 -29.01 1.73 -731.32 -1.27 -30.28 16 17 C 0.17 8.49 8.61 127.77 1.10 9.59 16 18 C -0.26 -13.41 9.17 84.03 0.77 -12.64 16 19 H 0.07 3.48 7.84 -2.91 -0.02 3.46 16 20 C -0.04 -2.25 5.04 84.86 0.43 -1.82 16 21 N -0.93 -52.37 10.78 21.65 0.23 -52.13 16 22 Si 0.96 43.60 29.58 68.60 2.03 45.63 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 C -0.15 -2.88 9.62 22.63 0.22 -2.66 16 27 C 0.10 1.91 11.17 84.67 0.95 2.86 16 28 N -0.49 -10.80 10.25 -184.04 -1.89 -12.69 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.15 3.11 7.74 -2.91 -0.02 3.09 16 33 H 0.41 8.96 6.61 -92.71 -0.61 8.35 16 34 H 0.09 1.99 7.96 -2.38 -0.02 1.97 16 35 H 0.07 1.90 7.22 -2.39 -0.02 1.88 16 36 H 0.15 2.59 8.00 -2.91 -0.02 2.56 16 37 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.12 5.82 5.76 -2.91 -0.02 5.80 16 40 H 0.06 2.37 7.51 -2.39 -0.02 2.35 16 41 H 0.06 2.10 7.30 -2.38 -0.02 2.08 16 42 H 0.01 0.45 6.81 -2.39 -0.02 0.43 16 43 H 0.02 1.01 7.21 -2.39 -0.02 0.99 16 44 H 0.02 0.92 7.89 -2.39 -0.02 0.91 16 45 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 46 H 0.16 2.51 6.54 -2.92 -0.02 2.49 16 47 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.40 390.07 3.85 -62.55 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.38 Total: 24.66 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.76 Total: -0.05 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -5.26 Total: -114.32 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.40 3.85 -62.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280334220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.661 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds