Wall clock time and date at job start Tue Mar 31 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31695 * 119.72315 * 2 1 4 4 C 1.31922 * 121.88401 * 179.97438 * 3 2 1 5 5 C 1.38358 * 121.07729 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.30604 * 0.28299 * 5 4 3 7 7 C 1.39524 * 119.71307 * 179.97438 * 2 1 3 8 8 C 1.47835 * 120.56268 * 0.02562 * 7 2 1 9 9 O 1.21562 * 119.99854 * 5.97229 * 8 7 2 10 10 N 1.34774 * 120.00617 * 185.97763 * 8 7 2 11 11 C 1.46493 * 120.00513 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47672 * 179.97438 * 11 10 8 13 13 C 1.38240 * 119.99354 * 269.72553 * 12 11 10 14 14 C 1.38241 * 119.99807 * 179.80388 * 13 12 11 15 15 C 1.38242 * 119.99828 * 0.42020 * 14 13 12 16 16 C 1.50696 * 119.99840 * 179.78694 * 15 14 13 17 17 H 1.08998 * 109.46932 * 160.01691 * 16 15 14 18 18 C 1.53001 * 109.47279 * 280.02168 * 16 15 14 19 19 N 1.46499 * 109.47156 * 40.01996 * 16 15 14 20 20 C 1.36936 * 120.00107 * 154.99310 * 19 16 15 21 21 H 1.08001 * 119.99980 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00372 * 180.02562 * 20 19 16 23 23 N 1.31614 * 120.00007 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00199 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47134 * 60.00322 * 24 22 20 26 26 H 1.48498 * 109.47088 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47404 * 300.00383 * 24 22 20 28 28 C 1.38232 * 119.99843 * 359.81171 * 15 14 13 29 29 C 1.38228 * 120.00771 * 89.98885 * 12 11 10 30 30 H 1.09000 * 109.47095 * 96.57245 * 1 2 3 31 31 H 1.08998 * 109.47378 * 216.57512 * 1 2 3 32 32 H 1.09005 * 109.46517 * 336.57723 * 1 2 3 33 33 H 1.07996 * 119.46190 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.34304 * 180.02562 * 5 4 3 35 35 H 1.08005 * 120.85857 * 179.69508 * 6 5 4 36 36 H 0.97006 * 119.99653 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46809 * 299.99393 * 11 10 8 38 38 H 1.09000 * 109.47529 * 59.99299 * 11 10 8 39 39 H 1.08001 * 120.00264 * 359.97438 * 13 12 11 40 40 H 1.07996 * 120.00147 * 180.20502 * 14 13 12 41 41 H 1.09002 * 109.47042 * 300.00271 * 18 16 15 42 42 H 1.08996 * 109.46846 * 60.00181 * 18 16 15 43 43 H 1.08993 * 109.47091 * 180.02562 * 18 16 15 44 44 H 0.96994 * 120.00267 * 335.00693 * 19 16 15 45 45 H 0.97003 * 120.00936 * 179.97438 * 23 22 20 46 46 H 1.08008 * 119.99922 * 179.97438 * 28 15 14 47 47 H 1.08007 * 119.99901 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2366 0.0362 0.0016 6 6 3.5987 -1.1915 -0.0038 7 6 2.1985 -1.2118 0.0005 8 6 1.4655 -2.4956 0.0005 9 8 0.2549 -2.5043 -0.1095 10 7 2.1393 -3.6564 0.1226 11 6 1.4130 -4.9286 0.1221 12 6 2.3909 -6.0656 0.2701 13 6 2.9438 -6.6523 -0.8529 14 6 3.8440 -7.6926 -0.7170 15 6 4.1847 -8.1519 0.5416 16 6 5.1623 -9.2892 0.6895 17 1 5.5765 -9.2834 1.6977 18 6 4.4424 -10.6162 0.4414 19 7 6.2455 -9.1318 -0.2843 20 6 7.4714 -9.6914 -0.0412 21 1 7.6396 -10.2491 0.8682 22 6 8.4979 -9.5418 -0.9635 23 7 8.2931 -8.8617 -2.0715 24 14 10.1700 -10.3059 -0.6322 25 1 10.0234 -11.7771 -0.4941 26 1 11.0852 -10.0030 -1.7617 27 1 10.7309 -9.7444 0.6230 28 6 3.6281 -7.5684 1.6643 29 6 2.7310 -6.5255 1.5285 30 1 -0.3633 -0.1176 -1.0209 31 1 -0.3634 -0.8253 0.6123 32 1 -0.3632 0.9431 0.4085 33 1 3.9735 2.1531 0.0009 34 1 5.3152 0.0907 0.0024 35 1 4.1660 -2.1105 -0.0080 36 1 3.1054 -3.6496 0.2101 37 1 0.7080 -4.9448 0.9532 38 1 0.8701 -5.0368 -0.8169 39 1 2.6746 -6.2961 -1.8363 40 1 4.2785 -8.1488 -1.5942 41 1 3.6364 -10.7333 1.1658 42 1 4.0283 -10.6219 -0.5669 43 1 5.1494 -11.4387 0.5488 44 1 6.0944 -8.6310 -1.1011 45 1 9.0104 -8.7568 -2.7160 46 1 3.8939 -7.9275 2.6476 47 1 2.2961 -6.0696 2.4058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280354052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:29 Heat of formation + Delta-G solvation = 34.113766 kcal Electronic energy + Delta-G solvation = -27634.299801 eV Core-core repulsion = 23782.011314 eV Total energy + Delta-G solvation = -3852.288487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06523 -39.66049 -38.94621 -36.09629 -34.80779 -33.30379 -32.82610 -32.26740 -30.78342 -30.34259 -28.50053 -27.96756 -26.15504 -24.63496 -23.89792 -22.70947 -22.43394 -21.66869 -21.00468 -19.78543 -18.29177 -17.47947 -17.14752 -16.56799 -15.93214 -15.76215 -15.70258 -15.17917 -15.02743 -14.59649 -14.47963 -14.20516 -13.74241 -13.57044 -13.44188 -13.40811 -13.17828 -12.96160 -12.76648 -12.62707 -12.49737 -12.29603 -12.19566 -11.97470 -11.69592 -11.21274 -10.96905 -10.86959 -10.66874 -10.36450 -10.30183 -10.24520 -10.06650 -9.76346 -9.70755 -9.48994 -9.17547 -9.02656 -8.70851 -8.38943 -7.05588 -5.83932 -3.12888 0.30928 0.82470 1.39246 1.62116 2.58599 2.96616 3.39148 3.43908 3.44588 3.47409 3.92987 4.02115 4.31602 4.33550 4.42347 4.53229 4.62746 4.71088 4.92392 5.05121 5.15021 5.21182 5.24635 5.33467 5.37526 5.50474 5.52554 5.55355 5.62745 5.66421 5.72422 5.78575 5.89447 5.90321 5.96826 6.16703 6.19190 6.25720 6.29749 6.30589 6.44969 6.56538 6.65798 6.71103 6.90096 7.10290 7.19031 7.22680 7.55825 7.63002 7.90706 8.34346 9.45751 10.00923 10.36210 11.38593 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002233 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.172800 B =12537.087977 C =14128.874572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.189 3.811 3 N -0.493 5.493 4 C 0.128 3.872 5 C -0.187 4.187 6 C -0.037 4.037 7 C -0.192 4.192 8 C 0.562 3.438 9 O -0.530 6.530 10 N -0.718 5.718 11 C 0.168 3.832 12 C -0.133 4.133 13 C -0.099 4.099 14 C -0.106 4.106 15 C -0.052 4.052 16 C 0.203 3.797 17 H 0.056 0.944 18 C -0.160 4.160 19 N -0.721 5.721 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.121 4.121 29 C -0.102 4.102 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.402 0.598 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 15.302 5.617 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.050 3.950 3 N -0.202 5.202 4 C -0.030 4.030 5 C -0.207 4.207 6 C -0.063 4.063 7 C -0.198 4.198 8 C 0.349 3.651 9 O -0.409 6.409 10 N -0.370 5.370 11 C 0.046 3.954 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.053 4.053 16 C 0.094 3.906 17 H 0.074 0.926 18 C -0.220 4.220 19 N -0.364 5.364 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.140 4.140 29 C -0.120 4.120 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.238 0.762 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.557 15.964 5.586 22.315 hybrid contribution 2.233 -1.096 -0.184 2.494 sum -12.324 14.869 5.401 20.053 Atomic orbital electron populations 1.21059 0.87497 1.03862 1.04273 1.21563 0.97663 0.86542 0.89201 1.67681 1.10015 1.28678 1.13826 1.23031 0.89418 0.98883 0.91623 1.22134 1.02092 0.92986 1.03491 1.21848 0.93131 0.99243 0.92109 1.20785 0.94407 0.95013 1.09555 1.18006 0.87044 0.83338 0.76674 1.90736 1.13410 1.87059 1.49694 1.46080 1.11255 1.05501 1.74131 1.20172 0.92701 0.79675 1.02867 1.19639 1.00959 0.98880 0.93884 1.21030 0.96718 0.96208 0.97765 1.21098 0.96774 0.96566 0.97956 1.20545 0.95381 0.96484 0.92897 1.19256 0.87037 0.89590 0.94757 0.92609 1.22422 0.99477 0.99660 1.00440 1.42509 1.08024 1.64405 1.21414 1.19193 0.88077 1.26575 1.03328 0.91121 1.24735 0.98321 1.00876 0.96864 1.69640 1.32715 1.45337 1.10382 0.86263 0.83976 0.78914 0.76998 1.21215 1.21675 1.21251 1.21024 0.97756 0.96748 0.98471 1.20929 0.97905 0.96950 0.96253 0.89857 0.87907 0.91266 0.82140 0.83880 0.84174 0.76218 0.90618 0.90558 0.86298 0.85345 0.94298 0.93300 0.92360 0.78011 0.93392 0.86090 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 8.88 36.00 0.32 -0.79 16 2 C 0.19 2.08 6.82 -82.17 -0.56 1.52 16 3 N -0.49 -5.27 10.26 -9.15 -0.09 -5.36 16 4 C 0.13 1.04 11.17 -17.47 -0.20 0.84 16 5 C -0.19 -1.38 10.10 -39.50 -0.40 -1.78 16 6 C -0.04 -0.31 9.63 -38.87 -0.37 -0.69 16 7 C -0.19 -2.01 5.89 -104.82 -0.62 -2.62 16 8 C 0.56 6.40 7.71 -12.33 -0.10 6.30 16 9 O -0.53 -7.20 13.37 5.31 0.07 -7.13 16 10 N -0.72 -7.18 5.50 -62.44 -0.34 -7.52 16 11 C 0.17 1.75 5.80 -5.20 -0.03 1.72 16 12 C -0.13 -1.56 5.25 -104.63 -0.55 -2.11 16 13 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 14 C -0.11 -1.68 9.06 -39.58 -0.36 -2.04 16 15 C -0.05 -0.85 4.95 -104.62 -0.52 -1.37 16 16 C 0.20 3.89 3.09 -69.08 -0.21 3.67 16 17 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 18 C -0.16 -2.79 9.47 37.16 0.35 -2.44 16 19 N -0.72 -17.31 5.07 -54.56 -0.28 -17.59 16 20 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 24 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 C -0.12 -1.68 9.67 -39.59 -0.38 -2.07 16 29 C -0.10 -1.22 9.70 -39.59 -0.38 -1.60 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.13 5.84 -51.93 -0.30 0.82 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.14 0.92 6.57 -52.48 -0.34 0.58 16 36 H 0.40 3.53 6.61 -40.82 -0.27 3.26 16 37 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.13 2.22 6.92 -52.49 -0.36 1.86 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.38 9.72 6.07 -40.82 -0.25 9.47 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.12 1.50 8.04 -52.48 -0.42 1.07 16 47 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -31.76 393.69 -10.20 -41.96 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.55 Total: 11.67 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -4.64 Total: -12.16 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.01 Total: -57.06 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: 0.07 Total: -7.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.76 -10.20 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280354052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.073 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds