Wall clock time and date at job start Tue Mar 31 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31695 * 119.72315 * 2 1 4 4 C 1.31922 * 121.88401 * 179.97438 * 3 2 1 5 5 C 1.38358 * 121.07729 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.30604 * 0.28299 * 5 4 3 7 7 C 1.39524 * 119.71307 * 179.97438 * 2 1 3 8 8 C 1.47835 * 120.56268 * 0.02562 * 7 2 1 9 9 O 1.21562 * 119.99854 * 5.97229 * 8 7 2 10 10 N 1.34774 * 120.00617 * 185.97763 * 8 7 2 11 11 C 1.46493 * 120.00513 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47672 * 179.97438 * 11 10 8 13 13 C 1.38240 * 119.99354 * 269.72553 * 12 11 10 14 14 C 1.38241 * 119.99807 * 179.80388 * 13 12 11 15 15 C 1.38242 * 119.99828 * 0.42020 * 14 13 12 16 16 C 1.50696 * 119.99840 * 179.78694 * 15 14 13 17 17 H 1.08998 * 109.46932 * 160.01691 * 16 15 14 18 18 C 1.53001 * 109.47279 * 280.02168 * 16 15 14 19 19 N 1.46499 * 109.47156 * 40.01996 * 16 15 14 20 20 C 1.36936 * 120.00107 * 154.99310 * 19 16 15 21 21 H 1.08001 * 119.99980 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00372 * 180.02562 * 20 19 16 23 23 N 1.31614 * 120.00007 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00199 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47134 * 60.00322 * 24 22 20 26 26 H 1.48498 * 109.47088 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47404 * 300.00383 * 24 22 20 28 28 C 1.38232 * 119.99843 * 359.81171 * 15 14 13 29 29 C 1.38228 * 120.00771 * 89.98885 * 12 11 10 30 30 H 1.09000 * 109.47095 * 96.57245 * 1 2 3 31 31 H 1.08998 * 109.47378 * 216.57512 * 1 2 3 32 32 H 1.09005 * 109.46517 * 336.57723 * 1 2 3 33 33 H 1.07996 * 119.46190 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.34304 * 180.02562 * 5 4 3 35 35 H 1.08005 * 120.85857 * 179.69508 * 6 5 4 36 36 H 0.97006 * 119.99653 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46809 * 299.99393 * 11 10 8 38 38 H 1.09000 * 109.47529 * 59.99299 * 11 10 8 39 39 H 1.08001 * 120.00264 * 359.97438 * 13 12 11 40 40 H 1.07996 * 120.00147 * 180.20502 * 14 13 12 41 41 H 1.09002 * 109.47042 * 300.00271 * 18 16 15 42 42 H 1.08996 * 109.46846 * 60.00181 * 18 16 15 43 43 H 1.08993 * 109.47091 * 180.02562 * 18 16 15 44 44 H 0.96994 * 120.00267 * 335.00693 * 19 16 15 45 45 H 0.97003 * 120.00936 * 179.97438 * 23 22 20 46 46 H 1.08008 * 119.99922 * 179.97438 * 28 15 14 47 47 H 1.08007 * 119.99901 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2366 0.0362 0.0016 6 6 3.5987 -1.1915 -0.0038 7 6 2.1985 -1.2118 0.0005 8 6 1.4655 -2.4956 0.0005 9 8 0.2549 -2.5043 -0.1095 10 7 2.1393 -3.6564 0.1226 11 6 1.4130 -4.9286 0.1221 12 6 2.3909 -6.0656 0.2701 13 6 2.9438 -6.6523 -0.8529 14 6 3.8440 -7.6926 -0.7170 15 6 4.1847 -8.1519 0.5416 16 6 5.1623 -9.2892 0.6895 17 1 5.5765 -9.2834 1.6977 18 6 4.4424 -10.6162 0.4414 19 7 6.2455 -9.1318 -0.2843 20 6 7.4714 -9.6914 -0.0412 21 1 7.6396 -10.2491 0.8682 22 6 8.4979 -9.5418 -0.9635 23 7 8.2931 -8.8617 -2.0715 24 14 10.1700 -10.3059 -0.6322 25 1 10.0234 -11.7771 -0.4941 26 1 11.0852 -10.0030 -1.7617 27 1 10.7309 -9.7444 0.6230 28 6 3.6281 -7.5684 1.6643 29 6 2.7310 -6.5255 1.5285 30 1 -0.3633 -0.1176 -1.0209 31 1 -0.3634 -0.8253 0.6123 32 1 -0.3632 0.9431 0.4085 33 1 3.9735 2.1531 0.0009 34 1 5.3152 0.0907 0.0024 35 1 4.1660 -2.1105 -0.0080 36 1 3.1054 -3.6496 0.2101 37 1 0.7080 -4.9448 0.9532 38 1 0.8701 -5.0368 -0.8169 39 1 2.6746 -6.2961 -1.8363 40 1 4.2785 -8.1488 -1.5942 41 1 3.6364 -10.7333 1.1658 42 1 4.0283 -10.6219 -0.5669 43 1 5.1494 -11.4387 0.5488 44 1 6.0944 -8.6310 -1.1011 45 1 9.0104 -8.7568 -2.7160 46 1 3.8939 -7.9275 2.6476 47 1 2.2961 -6.0696 2.4058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280354052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:29 Heat of formation + Delta-G solvation = 15.354147 kcal Electronic energy + Delta-G solvation = -27635.113279 eV Core-core repulsion = 23782.011314 eV Total energy + Delta-G solvation = -3853.101966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81583 -40.67563 -39.87100 -37.45521 -35.95679 -34.34248 -33.78639 -33.47862 -31.91693 -31.61119 -30.06901 -28.80860 -27.15703 -25.90488 -25.25515 -23.82418 -23.27833 -22.79829 -21.83001 -21.09534 -19.39779 -19.04876 -17.90611 -17.34567 -17.07329 -16.82154 -16.58727 -16.41357 -16.10808 -15.88842 -15.49901 -15.23525 -14.99113 -14.91122 -14.49898 -14.39708 -14.24761 -14.13106 -13.76057 -13.61916 -13.41559 -13.37299 -13.32361 -13.02921 -12.88890 -12.81622 -12.69935 -12.42375 -12.18237 -12.00897 -11.59756 -11.53313 -11.08625 -10.98720 -10.97265 -10.49370 -10.28257 -9.91657 -9.78513 -9.54394 -9.01897 -7.93496 -5.21734 -0.38941 0.16745 0.30538 0.53774 1.48055 1.50296 1.56243 1.78469 2.10693 2.56637 2.77128 2.92303 3.30394 3.40753 3.58441 3.63086 3.73726 3.84398 3.88238 3.99764 4.04238 4.06412 4.16060 4.36647 4.44796 4.54646 4.58890 4.60075 4.67704 4.71288 4.76014 4.77541 4.80546 5.00306 5.01101 5.07118 5.09869 5.12477 5.14162 5.22726 5.38268 5.42148 5.51053 5.56039 5.62661 5.63712 5.84697 6.10182 6.28702 6.40134 6.87772 7.07771 7.35115 8.09756 8.33974 9.29764 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002233 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.172800 B =12537.087977 C =14128.874572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.169 3.831 3 N -0.515 5.515 4 C 0.123 3.877 5 C -0.181 4.181 6 C -0.040 4.040 7 C -0.207 4.207 8 C 0.563 3.437 9 O -0.558 6.558 10 N -0.710 5.710 11 C 0.173 3.827 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.124 4.124 15 C -0.073 4.073 16 C 0.199 3.801 17 H 0.055 0.945 18 C -0.150 4.150 19 N -0.734 5.734 20 C -0.239 4.239 21 H 0.076 0.924 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.970 3.030 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.278 1.278 28 C -0.121 4.121 29 C -0.092 4.092 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.191 0.809 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.409 0.591 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.375 0.625 45 H 0.250 0.750 46 H 0.137 0.863 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 16.224 7.282 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.031 3.969 3 N -0.225 5.225 4 C -0.034 4.034 5 C -0.200 4.200 6 C -0.066 4.066 7 C -0.212 4.212 8 C 0.351 3.649 9 O -0.438 6.438 10 N -0.362 5.362 11 C 0.050 3.950 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.142 4.142 15 C -0.074 4.074 16 C 0.091 3.909 17 H 0.073 0.927 18 C -0.210 4.210 19 N -0.375 5.375 20 C -0.371 4.371 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.800 3.200 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.204 1.204 28 C -0.140 4.140 29 C -0.110 4.110 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.208 0.792 34 H 0.191 0.809 35 H 0.176 0.824 36 H 0.246 0.754 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.208 0.792 45 H 0.059 0.941 46 H 0.155 0.845 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.510 16.862 7.298 23.412 hybrid contribution 2.137 -1.312 -0.651 2.590 sum -12.373 15.551 6.648 20.955 Atomic orbital electron populations 1.20959 0.87686 1.03677 1.03784 1.21673 0.97966 0.87117 0.90176 1.67689 1.11458 1.28638 1.14743 1.23616 0.88736 1.00661 0.90340 1.22494 1.03554 0.92161 1.01798 1.22125 0.92385 1.00622 0.91433 1.20752 0.95340 0.94233 1.10915 1.18169 0.86760 0.83877 0.76140 1.90725 1.14583 1.87452 1.51060 1.45966 1.11572 1.05006 1.73646 1.20123 0.92328 0.79213 1.03299 1.19734 1.00050 0.98491 0.93407 1.21133 0.95980 0.95388 0.99112 1.20968 0.98183 0.97974 0.97085 1.20321 0.96305 0.96701 0.94055 1.19415 0.86652 0.91559 0.93297 0.92702 1.22267 0.99762 0.98053 1.00882 1.42703 1.08546 1.64117 1.22157 1.19587 0.89092 1.25413 1.02987 0.90572 1.25507 1.01832 1.02288 0.97059 1.69799 1.33347 1.47433 1.11412 0.85257 0.79856 0.78265 0.76665 1.20561 1.22370 1.20376 1.21193 0.97687 0.96863 0.98222 1.21222 0.96682 0.95840 0.97277 0.90318 0.88988 0.90648 0.79196 0.80913 0.82428 0.75369 0.89744 0.90633 0.85048 0.87887 0.91219 0.94141 0.93912 0.79194 0.94092 0.84468 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 8.88 71.23 0.63 -1.50 16 2 C 0.17 3.64 6.82 42.89 0.29 3.93 16 3 N -0.52 -10.47 10.26 -182.85 -1.88 -12.35 16 4 C 0.12 1.72 11.17 84.71 0.95 2.67 16 5 C -0.18 -2.14 10.10 22.32 0.23 -1.92 16 6 C -0.04 -0.58 9.63 22.73 0.22 -0.36 16 7 C -0.21 -4.10 5.89 -19.99 -0.12 -4.22 16 8 C 0.56 12.21 7.71 86.78 0.67 12.87 16 9 O -0.56 -14.92 13.37 -3.91 -0.05 -14.97 16 10 N -0.71 -12.77 5.50 -469.73 -2.58 -15.36 16 11 C 0.17 3.20 5.80 85.63 0.50 3.70 16 12 C -0.12 -2.45 5.25 -19.87 -0.10 -2.55 16 13 C -0.10 -2.47 9.70 22.27 0.22 -2.25 16 14 C -0.12 -3.96 9.06 22.27 0.20 -3.76 16 15 C -0.07 -2.34 4.95 -19.87 -0.10 -2.44 16 16 C 0.20 7.58 3.09 44.24 0.14 7.72 16 17 H 0.06 2.08 7.94 -2.39 -0.02 2.06 16 18 C -0.15 -5.19 9.47 71.98 0.68 -4.51 16 19 N -0.73 -35.93 5.07 -326.51 -1.66 -37.58 16 20 C -0.24 -12.92 9.93 84.03 0.83 -12.09 16 21 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 23 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 24 Si 0.97 45.22 29.55 68.60 2.03 47.24 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 C -0.12 -3.08 9.67 22.27 0.22 -2.86 16 29 C -0.09 -1.90 9.70 22.27 0.22 -1.68 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 2.07 5.84 -2.39 -0.01 2.05 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 35 H 0.16 1.65 6.57 -2.91 -0.02 1.63 16 36 H 0.41 6.19 6.61 -92.70 -0.61 5.58 16 37 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 38 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 39 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.10 3.78 6.92 -2.91 -0.02 3.76 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 44 H 0.37 19.64 6.07 -92.71 -0.56 19.08 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.14 2.99 8.04 -2.91 -0.02 2.97 16 47 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -69.83 393.69 2.10 -67.73 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.17 Total: 36.14 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 6.13 Total: -12.99 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -5.83 Total: -123.16 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.05 Total: -14.97 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -69.83 2.10 -67.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280354052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.086 kcal (2) G-P(sol) polarization free energy of solvation -69.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds