Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31695 * 119.72315 * 2 1 4 4 C 1.31922 * 121.88401 * 179.97438 * 3 2 1 5 5 C 1.38358 * 121.07729 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.30604 * 0.28299 * 5 4 3 7 7 C 1.39524 * 119.71307 * 179.97438 * 2 1 3 8 8 C 1.47835 * 120.56268 * 0.02562 * 7 2 1 9 9 O 1.21562 * 119.99854 * 5.97229 * 8 7 2 10 10 N 1.34774 * 120.00617 * 185.97763 * 8 7 2 11 11 C 1.46493 * 120.00513 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47672 * 179.97438 * 11 10 8 13 13 C 1.38240 * 119.99354 * 269.72553 * 12 11 10 14 14 C 1.38233 * 119.99561 * 179.76243 * 13 12 11 15 15 C 1.38241 * 120.00440 * 0.50314 * 14 13 12 16 16 C 1.50693 * 120.00178 * 179.72310 * 15 14 13 17 17 H 1.08997 * 109.47001 * 200.02074 * 16 15 14 18 18 C 1.53005 * 109.47023 * 80.02649 * 16 15 14 19 19 N 1.46497 * 109.47243 * 320.02415 * 16 15 14 20 20 C 1.36940 * 119.99701 * 204.99958 * 19 16 15 21 21 H 1.08001 * 120.00340 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99732 * 180.02562 * 20 19 16 23 23 N 1.31625 * 120.00029 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00166 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46809 * 90.00305 * 24 22 20 26 26 H 1.48500 * 109.47222 * 210.00388 * 24 22 20 27 27 H 1.48500 * 109.47056 * 330.00297 * 24 22 20 28 28 C 1.38236 * 119.99707 * 359.74872 * 15 14 13 29 29 C 1.38228 * 120.00771 * 89.98885 * 12 11 10 30 30 H 1.09000 * 109.47095 * 96.57245 * 1 2 3 31 31 H 1.08998 * 109.47378 * 216.57512 * 1 2 3 32 32 H 1.09005 * 109.46517 * 336.57723 * 1 2 3 33 33 H 1.07996 * 119.46190 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.34304 * 180.02562 * 5 4 3 35 35 H 1.08005 * 120.85857 * 179.69508 * 6 5 4 36 36 H 0.97006 * 119.99653 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46809 * 299.99393 * 11 10 8 38 38 H 1.09000 * 109.47529 * 59.99299 * 11 10 8 39 39 H 1.08001 * 120.00264 * 359.97438 * 13 12 11 40 40 H 1.08007 * 120.00240 * 180.23132 * 14 13 12 41 41 H 1.08997 * 109.47098 * 59.99528 * 18 16 15 42 42 H 1.08997 * 109.46839 * 179.97438 * 18 16 15 43 43 H 1.08997 * 109.46763 * 299.99571 * 18 16 15 44 44 H 0.96992 * 120.00276 * 24.99989 * 19 16 15 45 45 H 0.97000 * 119.99737 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.00289 * 179.97438 * 28 15 14 47 47 H 1.08005 * 119.99628 * 0.02562 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2366 0.0362 0.0016 6 6 3.5987 -1.1915 -0.0038 7 6 2.1985 -1.2118 0.0005 8 6 1.4655 -2.4956 0.0005 9 8 0.2549 -2.5043 -0.1095 10 7 2.1393 -3.6564 0.1226 11 6 1.4130 -4.9286 0.1221 12 6 2.3909 -6.0656 0.2701 13 6 2.9438 -6.6523 -0.8529 14 6 3.8446 -7.6920 -0.7170 15 6 4.1847 -8.1519 0.5416 16 6 5.1619 -9.2895 0.6895 17 1 5.0443 -9.7439 1.6732 18 6 6.5891 -8.7584 0.5403 19 7 4.9036 -10.2930 -0.3461 20 6 5.2698 -11.5967 -0.1426 21 1 5.7494 -11.8851 0.7811 22 6 5.0255 -12.5475 -1.1241 23 7 5.3779 -13.8006 -0.9287 24 14 4.1965 -12.0487 -2.7220 25 1 5.2294 -11.6528 -3.7128 26 1 3.4148 -13.1943 -3.2528 27 1 3.2864 -10.9025 -2.4708 28 6 3.6278 -7.5687 1.6644 29 6 2.7310 -6.5255 1.5285 30 1 -0.3633 -0.1176 -1.0209 31 1 -0.3634 -0.8253 0.6123 32 1 -0.3632 0.9431 0.4085 33 1 3.9735 2.1531 0.0009 34 1 5.3152 0.0907 0.0024 35 1 4.1660 -2.1105 -0.0080 36 1 3.1054 -3.6496 0.2101 37 1 0.7080 -4.9448 0.9532 38 1 0.8701 -5.0368 -0.8169 39 1 2.6746 -6.2961 -1.8363 40 1 4.2794 -8.1480 -1.5942 41 1 6.7812 -8.0117 1.3108 42 1 7.2959 -9.5811 0.6478 43 1 6.7066 -8.3040 -0.4434 44 1 4.4732 -10.0340 -1.1758 45 1 5.2068 -14.4650 -1.6144 46 1 3.8931 -7.9282 2.6476 47 1 2.2955 -6.0702 2.4057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280354053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = 38.853403 kcal Electronic energy + Delta-G solvation = -27623.785039 eV Core-core repulsion = 23771.702078 eV Total energy + Delta-G solvation = -3852.082961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17869 -39.79562 -39.07305 -36.26935 -34.95160 -33.41429 -32.92901 -32.29314 -30.95274 -30.58726 -28.99098 -28.10930 -26.26851 -24.74388 -23.72058 -22.85475 -22.53872 -21.63578 -21.12400 -19.88334 -18.42546 -17.99214 -17.26328 -16.68249 -16.03096 -15.83598 -15.81993 -15.35184 -15.12257 -14.73428 -14.57088 -14.23054 -13.94677 -13.74355 -13.56768 -13.39481 -13.27202 -13.02880 -12.84289 -12.71922 -12.60952 -12.44828 -12.30915 -12.22099 -11.70224 -11.56351 -11.15105 -10.95673 -10.75820 -10.42150 -10.40781 -10.35005 -10.10763 -9.84511 -9.64616 -9.59966 -9.28733 -9.06230 -8.85258 -8.52502 -7.36112 -5.83108 -3.19225 0.19652 0.70327 1.25424 1.47494 2.48067 2.84300 3.32369 3.34503 3.36164 3.40831 3.81180 3.88590 4.18045 4.21864 4.29891 4.50713 4.53191 4.58831 4.80038 4.93442 5.02288 5.07971 5.09593 5.18682 5.26427 5.37756 5.43977 5.47163 5.47886 5.50011 5.55599 5.68662 5.73996 5.79812 5.85097 6.04538 6.06460 6.12137 6.14961 6.20613 6.27621 6.44453 6.52905 6.55368 6.79768 6.94846 7.05667 7.10022 7.45222 7.80340 7.91831 8.35445 9.12867 9.85264 10.04243 11.34889 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002020 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.758240 B =13857.680459 C =14249.589000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.190 3.810 3 N -0.492 5.492 4 C 0.128 3.872 5 C -0.188 4.188 6 C -0.038 4.038 7 C -0.192 4.192 8 C 0.562 3.438 9 O -0.528 6.528 10 N -0.718 5.718 11 C 0.167 3.833 12 C -0.131 4.131 13 C -0.098 4.098 14 C -0.113 4.113 15 C -0.054 4.054 16 C 0.209 3.791 17 H 0.065 0.935 18 C -0.159 4.159 19 N -0.745 5.745 20 C -0.245 4.245 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.931 5.931 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C -0.118 4.118 29 C -0.099 4.099 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.124 0.876 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 29.332 3.546 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.052 3.948 3 N -0.201 5.201 4 C -0.029 4.029 5 C -0.208 4.208 6 C -0.064 4.064 7 C -0.197 4.197 8 C 0.349 3.651 9 O -0.406 6.406 10 N -0.370 5.370 11 C 0.045 3.955 12 C -0.132 4.132 13 C -0.117 4.117 14 C -0.132 4.132 15 C -0.055 4.055 16 C 0.100 3.900 17 H 0.083 0.917 18 C -0.220 4.220 19 N -0.389 5.389 20 C -0.375 4.375 21 H 0.110 0.890 22 C -0.190 4.190 23 N -0.579 5.579 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.202 1.202 28 C -0.136 4.136 29 C -0.117 4.117 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.236 0.764 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.142 0.858 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.085 29.825 3.559 30.464 hybrid contribution 0.665 -0.696 -1.256 1.583 sum -4.420 29.129 2.303 29.552 Atomic orbital electron populations 1.21073 0.87437 1.03961 1.04328 1.21583 0.97714 0.86520 0.89006 1.67691 1.10011 1.28685 1.13728 1.23042 0.89431 0.98898 0.91536 1.22115 1.02005 0.93006 1.03690 1.21809 0.93115 0.99120 0.92379 1.20787 0.94403 0.95022 1.09520 1.18011 0.87077 0.83318 0.76743 1.90751 1.13405 1.87006 1.49442 1.46057 1.11113 1.05520 1.74315 1.20187 0.92706 0.79549 1.03087 1.19651 1.00740 0.98934 0.93852 1.21015 0.96592 0.96239 0.97851 1.21034 0.98003 0.96437 0.97709 1.20564 0.96133 0.95910 0.92930 1.19225 0.90509 0.86211 0.94089 0.91689 1.22388 0.98868 1.00445 1.00251 1.42866 1.73205 1.05893 1.16931 1.19057 1.32739 0.82637 1.03026 0.89044 1.24661 1.00914 0.95271 0.98122 1.69696 1.52505 1.00902 1.34762 0.86610 0.79658 0.77633 0.85049 1.21001 1.21592 1.20249 1.21050 0.97425 0.96583 0.98589 1.20975 0.97598 0.96833 0.96333 0.89800 0.87862 0.91184 0.82120 0.83945 0.84305 0.76389 0.90439 0.90476 0.86267 0.85938 0.94005 0.91841 0.93440 0.80440 0.92983 0.85760 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 8.88 36.00 0.32 -0.71 16 2 C 0.19 1.89 6.82 -82.17 -0.56 1.33 16 3 N -0.49 -4.72 10.26 -9.15 -0.09 -4.81 16 4 C 0.13 0.87 11.17 -17.47 -0.20 0.67 16 5 C -0.19 -1.07 10.10 -39.50 -0.40 -1.47 16 6 C -0.04 -0.25 9.63 -38.87 -0.37 -0.63 16 7 C -0.19 -1.75 5.89 -104.82 -0.62 -2.37 16 8 C 0.56 5.75 7.71 -12.33 -0.10 5.66 16 9 O -0.53 -6.76 13.37 5.31 0.07 -6.69 16 10 N -0.72 -6.19 5.50 -62.44 -0.34 -6.53 16 11 C 0.17 1.61 5.80 -5.20 -0.03 1.58 16 12 C -0.13 -1.42 5.25 -104.63 -0.55 -1.97 16 13 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 14 C -0.11 -1.67 9.06 -39.58 -0.36 -2.03 16 15 C -0.05 -0.83 4.95 -104.62 -0.52 -1.35 16 16 C 0.21 3.81 3.09 -69.08 -0.21 3.59 16 17 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 18 C -0.16 -2.61 9.47 37.16 0.35 -2.26 16 19 N -0.75 -16.96 4.87 -54.55 -0.27 -17.22 16 20 C -0.24 -6.70 10.41 -15.06 -0.16 -6.85 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 24 Si 0.88 21.69 27.74 -169.99 -4.71 16.98 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 28 C -0.12 -1.53 9.67 -39.58 -0.38 -1.91 16 29 C -0.10 -1.09 9.70 -39.59 -0.38 -1.48 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.06 5.84 -51.93 -0.30 0.76 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 35 H 0.14 0.60 6.57 -52.48 -0.34 0.26 16 36 H 0.40 2.73 6.61 -40.82 -0.27 2.46 16 37 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.90 6.92 -52.48 -0.36 1.53 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.36 8.10 3.93 -40.82 -0.16 7.94 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 47 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -33.24 390.57 -9.84 -43.08 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.51 Total: 8.97 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -4.64 Total: -11.69 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.07 Total: -56.54 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.07 Total: -6.69 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.24 -9.84 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280354053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.934 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds