Wall clock time and date at job start Tue Mar 31 2020 22:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31695 * 119.72315 * 2 1 4 4 C 1.31922 * 121.88401 * 179.97438 * 3 2 1 5 5 C 1.38358 * 121.07729 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.30604 * 0.28299 * 5 4 3 7 7 C 1.39524 * 119.71307 * 179.97438 * 2 1 3 8 8 C 1.47835 * 120.56268 * 0.02562 * 7 2 1 9 9 O 1.21562 * 119.99854 * 5.97229 * 8 7 2 10 10 N 1.34774 * 120.00617 * 185.97763 * 8 7 2 11 11 C 1.46493 * 120.00513 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47672 * 179.97438 * 11 10 8 13 13 C 1.38240 * 119.99354 * 269.72553 * 12 11 10 14 14 C 1.38233 * 119.99561 * 179.76243 * 13 12 11 15 15 C 1.38241 * 120.00440 * 0.50314 * 14 13 12 16 16 C 1.50693 * 120.00178 * 179.72310 * 15 14 13 17 17 H 1.08997 * 109.47001 * 200.02074 * 16 15 14 18 18 C 1.53005 * 109.47023 * 80.02649 * 16 15 14 19 19 N 1.46497 * 109.47243 * 320.02415 * 16 15 14 20 20 C 1.36940 * 119.99701 * 204.99958 * 19 16 15 21 21 H 1.08001 * 120.00340 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99732 * 180.02562 * 20 19 16 23 23 N 1.31625 * 120.00029 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00166 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46809 * 90.00305 * 24 22 20 26 26 H 1.48500 * 109.47222 * 210.00388 * 24 22 20 27 27 H 1.48500 * 109.47056 * 330.00297 * 24 22 20 28 28 C 1.38236 * 119.99707 * 359.74872 * 15 14 13 29 29 C 1.38228 * 120.00771 * 89.98885 * 12 11 10 30 30 H 1.09000 * 109.47095 * 96.57245 * 1 2 3 31 31 H 1.08998 * 109.47378 * 216.57512 * 1 2 3 32 32 H 1.09005 * 109.46517 * 336.57723 * 1 2 3 33 33 H 1.07996 * 119.46190 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.34304 * 180.02562 * 5 4 3 35 35 H 1.08005 * 120.85857 * 179.69508 * 6 5 4 36 36 H 0.97006 * 119.99653 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46809 * 299.99393 * 11 10 8 38 38 H 1.09000 * 109.47529 * 59.99299 * 11 10 8 39 39 H 1.08001 * 120.00264 * 359.97438 * 13 12 11 40 40 H 1.08007 * 120.00240 * 180.23132 * 14 13 12 41 41 H 1.08997 * 109.47098 * 59.99528 * 18 16 15 42 42 H 1.08997 * 109.46839 * 179.97438 * 18 16 15 43 43 H 1.08997 * 109.46763 * 299.99571 * 18 16 15 44 44 H 0.96992 * 120.00276 * 24.99989 * 19 16 15 45 45 H 0.97000 * 119.99737 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.00289 * 179.97438 * 28 15 14 47 47 H 1.08005 * 119.99628 * 0.02562 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2366 0.0362 0.0016 6 6 3.5987 -1.1915 -0.0038 7 6 2.1985 -1.2118 0.0005 8 6 1.4655 -2.4956 0.0005 9 8 0.2549 -2.5043 -0.1095 10 7 2.1393 -3.6564 0.1226 11 6 1.4130 -4.9286 0.1221 12 6 2.3909 -6.0656 0.2701 13 6 2.9438 -6.6523 -0.8529 14 6 3.8446 -7.6920 -0.7170 15 6 4.1847 -8.1519 0.5416 16 6 5.1619 -9.2895 0.6895 17 1 5.0443 -9.7439 1.6732 18 6 6.5891 -8.7584 0.5403 19 7 4.9036 -10.2930 -0.3461 20 6 5.2698 -11.5967 -0.1426 21 1 5.7494 -11.8851 0.7811 22 6 5.0255 -12.5475 -1.1241 23 7 5.3779 -13.8006 -0.9287 24 14 4.1965 -12.0487 -2.7220 25 1 5.2294 -11.6528 -3.7128 26 1 3.4148 -13.1943 -3.2528 27 1 3.2864 -10.9025 -2.4708 28 6 3.6278 -7.5687 1.6644 29 6 2.7310 -6.5255 1.5285 30 1 -0.3633 -0.1176 -1.0209 31 1 -0.3634 -0.8253 0.6123 32 1 -0.3632 0.9431 0.4085 33 1 3.9735 2.1531 0.0009 34 1 5.3152 0.0907 0.0024 35 1 4.1660 -2.1105 -0.0080 36 1 3.1054 -3.6496 0.2101 37 1 0.7080 -4.9448 0.9532 38 1 0.8701 -5.0368 -0.8169 39 1 2.6746 -6.2961 -1.8363 40 1 4.2794 -8.1480 -1.5942 41 1 6.7812 -8.0117 1.3108 42 1 7.2959 -9.5811 0.6478 43 1 6.7066 -8.3040 -0.4434 44 1 4.4732 -10.0340 -1.1758 45 1 5.2068 -14.4650 -1.6144 46 1 3.8931 -7.9282 2.6476 47 1 2.2955 -6.0702 2.4057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280354053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:32 Heat of formation + Delta-G solvation = 18.039650 kcal Electronic energy + Delta-G solvation = -27624.687591 eV Core-core repulsion = 23771.702078 eV Total energy + Delta-G solvation = -3852.985513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81523 -40.72354 -39.88860 -37.59464 -36.00125 -34.37375 -33.81939 -33.49652 -32.12267 -31.77425 -30.43109 -28.81910 -27.17208 -25.72789 -25.18508 -23.88112 -23.24851 -22.74907 -21.84524 -21.18784 -19.93964 -19.06882 -17.90264 -17.31954 -17.05564 -16.93381 -16.62226 -16.44322 -16.07874 -15.98504 -15.54698 -15.26807 -15.03821 -14.78339 -14.58135 -14.42357 -14.25941 -14.12706 -14.03620 -13.77778 -13.59500 -13.38154 -13.34224 -13.10462 -12.91430 -12.82225 -12.74734 -12.55600 -12.11121 -11.94191 -11.73054 -11.56340 -11.10171 -11.04230 -10.96651 -10.48442 -10.28663 -9.91505 -9.82269 -9.60661 -9.32696 -8.03058 -5.36149 -0.37999 0.18314 0.26221 0.49737 1.35087 1.38168 1.45348 1.79016 2.09002 2.46704 2.78009 2.86881 3.29098 3.30969 3.58346 3.61399 3.62841 3.73299 3.85089 3.90674 3.95521 4.06739 4.13313 4.31689 4.46182 4.51778 4.57531 4.59659 4.67482 4.70772 4.71377 4.74857 4.77311 4.96197 5.00602 5.04807 5.08553 5.09883 5.13795 5.20229 5.37682 5.39728 5.52493 5.60384 5.63569 5.72520 5.81029 6.05702 6.21553 6.41698 6.89341 7.06746 7.09293 7.82489 8.01268 9.18243 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002020 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.758240 B =13857.680459 C =14249.589000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.167 3.833 3 N -0.518 5.518 4 C 0.121 3.879 5 C -0.179 4.179 6 C -0.037 4.037 7 C -0.207 4.207 8 C 0.561 3.439 9 O -0.560 6.560 10 N -0.707 5.707 11 C 0.172 3.828 12 C -0.115 4.115 13 C -0.096 4.096 14 C -0.129 4.129 15 C -0.074 4.074 16 C 0.203 3.797 17 H 0.054 0.946 18 C -0.149 4.149 19 N -0.749 5.749 20 C -0.226 4.226 21 H 0.060 0.940 22 C -0.064 4.064 23 N -0.983 5.983 24 Si 0.948 3.052 25 H -0.277 1.277 26 H -0.297 1.297 27 H -0.254 1.254 28 C -0.120 4.120 29 C -0.090 4.090 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.190 0.810 34 H 0.177 0.823 35 H 0.164 0.836 36 H 0.412 0.588 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.050 0.950 44 H 0.365 0.635 45 H 0.257 0.743 46 H 0.136 0.864 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 32.437 3.419 32.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.029 3.971 3 N -0.228 5.228 4 C -0.036 4.036 5 C -0.198 4.198 6 C -0.063 4.063 7 C -0.212 4.212 8 C 0.349 3.651 9 O -0.441 6.441 10 N -0.359 5.359 11 C 0.049 3.951 12 C -0.116 4.116 13 C -0.114 4.114 14 C -0.147 4.147 15 C -0.075 4.075 16 C 0.095 3.905 17 H 0.072 0.928 18 C -0.209 4.209 19 N -0.394 5.394 20 C -0.357 4.357 21 H 0.078 0.922 22 C -0.256 4.256 23 N -0.633 5.633 24 Si 0.776 3.224 25 H -0.203 1.203 26 H -0.224 1.224 27 H -0.178 1.178 28 C -0.138 4.138 29 C -0.109 4.109 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.207 0.793 34 H 0.195 0.805 35 H 0.182 0.818 36 H 0.249 0.751 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.199 0.801 45 H 0.066 0.934 46 H 0.153 0.847 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.839 32.994 3.458 33.526 hybrid contribution 0.664 -1.519 -1.087 1.982 sum -4.175 31.475 2.371 31.839 Atomic orbital electron populations 1.20955 0.88010 1.03571 1.03700 1.21636 0.97831 0.87273 0.90327 1.67679 1.11633 1.28693 1.14767 1.23633 0.88687 1.00838 0.90405 1.22510 1.03624 0.92026 1.01630 1.22144 0.92096 1.00750 0.91291 1.20738 0.95564 0.93970 1.10951 1.18213 0.86751 0.83974 0.76127 1.90740 1.14845 1.87466 1.51017 1.45888 1.11583 1.04725 1.73704 1.20096 0.92389 0.79428 1.03161 1.19742 0.99811 0.98544 0.93468 1.21158 0.95721 0.95355 0.99174 1.21005 0.99192 0.97595 0.96949 1.20272 0.96940 0.95997 0.94281 1.19381 0.92553 0.86418 0.92131 0.92827 1.22231 0.96794 1.00245 1.01635 1.42887 1.73137 1.05003 1.18343 1.19028 1.30630 0.84679 1.01370 0.92210 1.25456 1.02774 0.95270 1.02080 1.69875 1.55055 1.02294 1.36098 0.85510 0.78895 0.77584 0.80460 1.20268 1.22392 1.17826 1.21187 0.97418 0.96869 0.98328 1.21226 0.96456 0.95808 0.97374 0.90420 0.89103 0.90801 0.79327 0.80542 0.81817 0.75095 0.90166 0.90753 0.84590 0.87169 0.90813 0.94324 0.93053 0.80069 0.93420 0.84652 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 8.88 71.23 0.63 -1.38 16 2 C 0.17 3.22 6.82 42.89 0.29 3.51 16 3 N -0.52 -9.29 10.26 -182.85 -1.88 -11.17 16 4 C 0.12 1.32 11.17 84.71 0.95 2.26 16 5 C -0.18 -1.35 10.10 22.32 0.23 -1.12 16 6 C -0.04 -0.37 9.63 22.73 0.22 -0.15 16 7 C -0.21 -3.43 5.89 -19.99 -0.12 -3.55 16 8 C 0.56 10.63 7.71 86.78 0.67 11.30 16 9 O -0.56 -14.06 13.37 -3.91 -0.05 -14.12 16 10 N -0.71 -10.17 5.50 -469.73 -2.58 -12.76 16 11 C 0.17 2.81 5.80 85.63 0.50 3.31 16 12 C -0.12 -2.10 5.25 -19.87 -0.10 -2.21 16 13 C -0.10 -2.04 9.70 22.27 0.22 -1.82 16 14 C -0.13 -3.52 9.06 22.27 0.20 -3.32 16 15 C -0.07 -2.14 4.95 -19.87 -0.10 -2.24 16 16 C 0.20 7.28 3.09 44.25 0.14 7.42 16 17 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 18 C -0.15 -4.76 9.47 71.98 0.68 -4.08 16 19 N -0.75 -34.00 4.87 -326.51 -1.59 -35.60 16 20 C -0.23 -12.66 10.41 84.03 0.87 -11.78 16 21 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 22 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 23 N -0.98 -62.67 13.97 21.65 0.30 -62.36 16 24 Si 0.95 45.19 27.74 68.60 1.90 47.09 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 28 C -0.12 -2.77 9.67 22.27 0.22 -2.56 16 29 C -0.09 -1.67 9.70 22.27 0.22 -1.45 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.94 5.84 -2.39 -0.01 1.92 16 32 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.16 0.71 6.57 -2.91 -0.02 0.69 16 36 H 0.41 4.08 6.61 -92.70 -0.61 3.47 16 37 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 38 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 39 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.11 3.24 6.92 -2.91 -0.02 3.22 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.36 15.98 3.93 -92.71 -0.36 15.62 16 45 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.14 2.78 8.04 -2.91 -0.02 2.75 16 47 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -74.95 390.57 2.24 -72.72 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.03 Total: 27.37 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 6.17 Total: -11.17 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.75 Total: -121.88 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.05 Total: -14.12 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -74.95 2.24 -72.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280354053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.755 kcal (2) G-P(sol) polarization free energy of solvation -74.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds