Wall clock time and date at job start Tue Mar 31 2020 22:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46148 * 2 1 4 4 C 1.36940 * 119.99802 * 60.00336 * 3 2 1 5 5 H 1.07997 * 119.99551 * 0.02562 * 4 3 2 6 6 C 1.38812 * 119.99552 * 179.97438 * 4 3 2 7 7 N 1.31611 * 120.00431 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99379 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47023 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47305 * 299.99968 * 8 6 4 11 11 H 1.48503 * 109.47097 * 60.00247 * 8 6 4 12 12 C 1.53038 * 109.46197 * 119.97640 * 2 1 3 13 13 C 1.53167 * 109.32971 * 181.38293 * 12 2 1 14 14 N 1.46928 * 108.76412 * 305.35421 * 13 12 2 15 15 C 1.34772 * 120.62896 * 233.58082 * 14 13 12 16 16 O 1.21508 * 120.00255 * 359.86432 * 15 14 13 17 17 C 1.48277 * 120.00093 * 179.86167 * 15 14 13 18 18 C 1.40278 * 119.23899 * 203.13761 * 17 15 14 19 19 C 1.36502 * 119.81262 * 179.97438 * 18 17 15 20 20 C 1.40756 * 118.24472 * 359.97438 * 19 18 17 21 21 C 1.40419 * 121.27313 * 180.02562 * 20 19 18 22 22 C 1.36133 * 119.65118 * 179.97438 * 21 20 19 23 23 C 1.39430 * 120.90959 * 0.02562 * 22 21 20 24 24 C 1.35993 * 121.08960 * 359.97438 * 23 22 21 25 25 C 1.40827 * 119.73571 * 359.97438 * 24 23 22 26 26 N 1.31878 * 119.24048 * 22.85912 * 17 15 14 27 27 C 1.46925 * 118.73741 * 53.61365 * 14 13 12 28 28 C 1.53045 * 109.45716 * 240.02952 * 2 1 3 29 29 H 1.08997 * 109.47017 * 59.99549 * 1 2 3 30 30 H 1.08995 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46502 * 299.99935 * 1 2 3 32 32 H 0.97001 * 119.99838 * 240.00090 * 3 2 1 33 33 H 0.97003 * 120.00292 * 359.97438 * 7 6 4 34 34 H 1.08996 * 109.49602 * 301.32486 * 12 2 1 35 35 H 1.09006 * 109.49959 * 61.41488 * 12 2 1 36 36 H 1.08998 * 109.59110 * 185.57090 * 13 12 2 37 37 H 1.08996 * 109.58844 * 65.13810 * 13 12 2 38 38 H 1.08003 * 120.09617 * 359.94360 * 18 17 15 39 39 H 1.08000 * 120.87843 * 179.97438 * 19 18 17 40 40 H 1.08004 * 120.17604 * 359.95906 * 21 20 19 41 41 H 1.08001 * 119.54655 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.45845 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.13700 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.58340 * 186.59814 * 27 14 13 45 45 H 1.08994 * 109.59035 * 66.17424 * 27 14 13 46 46 H 1.08996 * 109.49551 * 298.58041 * 28 2 1 47 47 H 1.08995 * 109.50075 * 58.64719 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6872 2.2244 1.0271 5 1 1.0667 1.8708 1.8373 6 6 2.1501 3.5330 1.0273 7 7 2.9067 3.9637 0.0402 8 14 1.6981 4.6832 2.4281 9 1 2.3135 6.0142 2.1938 10 1 0.2215 4.8250 2.4953 11 1 2.2006 4.1247 3.7090 12 6 2.0399 -0.7210 1.2499 13 6 3.5712 -0.6890 1.2644 14 7 4.0676 -1.2495 0.0002 15 6 4.9616 -2.2580 0.0002 16 8 5.3667 -2.7107 1.0525 17 6 5.4509 -2.8151 -1.2838 18 6 5.9649 -4.1200 -1.3130 19 6 6.4180 -4.6447 -2.4889 20 6 6.3510 -3.8447 -3.6450 21 6 6.7988 -4.3207 -4.8878 22 6 6.7180 -3.5189 -5.9850 23 6 6.1965 -2.2291 -5.8926 24 6 5.7533 -1.7341 -4.7061 25 6 5.8188 -2.5327 -3.5479 26 7 5.3878 -2.0744 -2.3731 27 6 3.5714 -0.6890 -1.2641 28 6 2.0398 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 2.5757 1.6986 -0.7275 33 1 3.1411 3.3665 -0.6874 34 1 1.6575 -0.2210 2.1397 35 1 1.6976 -1.7558 1.2382 36 1 3.9413 -1.2851 2.0986 37 1 3.9143 0.3404 1.3675 38 1 6.0024 -4.7077 -0.4077 39 1 6.8175 -5.6472 -2.5310 40 1 7.2054 -5.3177 -4.9729 41 1 7.0632 -3.8866 -6.9400 42 1 6.1438 -1.6128 -6.7780 43 1 5.3518 -0.7329 -4.6522 44 1 3.9416 -1.2850 -2.0983 45 1 3.9145 0.3404 -1.3672 46 1 1.6975 -1.7556 -1.2383 47 1 1.6570 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281527036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:35 Heat of formation + Delta-G solvation = 53.571765 kcal Electronic energy + Delta-G solvation = -29780.313434 eV Core-core repulsion = 25928.868708 eV Total energy + Delta-G solvation = -3851.444725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35031 -39.79021 -37.99210 -37.02706 -34.76100 -33.79614 -32.50818 -31.23232 -30.57833 -30.17947 -28.70904 -27.76579 -25.39690 -24.03742 -23.76757 -22.81887 -22.60435 -22.27690 -20.32414 -18.69245 -18.22385 -17.71875 -17.14009 -16.91469 -16.04578 -15.47810 -15.34374 -14.98644 -14.79001 -14.60049 -14.27906 -14.11608 -13.82965 -13.61449 -13.53397 -13.37123 -13.22355 -12.97101 -12.61085 -12.28877 -11.96110 -11.84971 -11.73276 -11.53430 -11.32517 -11.19679 -10.90470 -10.75218 -10.65038 -10.48284 -10.33881 -10.12619 -9.98207 -9.83539 -9.17674 -9.08114 -8.93550 -8.88528 -8.53612 -8.21191 -6.98159 -6.04327 -3.04236 -0.05019 0.41746 1.65023 2.29166 3.11341 3.13837 3.54158 3.57057 3.74275 3.77562 3.95210 4.24370 4.42119 4.50161 4.57318 4.70147 4.78550 4.84245 5.02907 5.12139 5.31269 5.37790 5.40979 5.45476 5.59708 5.62486 5.66106 5.72522 5.75363 5.80159 5.86531 6.01650 6.04823 6.07714 6.11638 6.17701 6.29851 6.36493 6.40393 6.44778 6.49483 6.57787 6.63553 6.75017 6.87400 7.03631 7.06507 7.43203 7.71440 7.86607 8.29305 8.80426 9.27275 10.13893 10.29809 11.43573 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.003124 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.514276 B = 8961.748296 C = 9643.815828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.202 3.798 3 N -0.727 5.727 4 C -0.321 4.321 5 H 0.064 0.936 6 C -0.045 4.045 7 N -0.945 5.945 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.131 4.131 13 C 0.119 3.881 14 N -0.572 5.572 15 C 0.560 3.440 16 O -0.544 6.544 17 C 0.126 3.874 18 C -0.125 4.125 19 C -0.063 4.063 20 C -0.090 4.090 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.105 4.105 24 C -0.083 4.083 25 C 0.118 3.882 26 N -0.430 5.430 27 C 0.083 3.917 28 C -0.133 4.133 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.129 0.871 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -18.970 -11.978 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.110 3.890 3 N -0.371 5.371 4 C -0.452 4.452 5 H 0.082 0.918 6 C -0.242 4.242 7 N -0.591 5.591 8 Si 0.907 3.093 9 H -0.212 1.212 10 H -0.225 1.225 11 H -0.224 1.224 12 C -0.172 4.172 13 C -0.003 4.003 14 N -0.302 5.302 15 C 0.346 3.654 16 O -0.422 6.422 17 C -0.027 4.027 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.092 4.092 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.005 4.005 26 N -0.142 5.142 27 C -0.040 4.040 28 C -0.172 4.172 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.146 0.854 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.933 -16.805 -10.655 20.764 hybrid contribution 0.114 -2.160 -0.814 2.311 sum 6.047 -18.966 -11.469 22.974 Atomic orbital electron populations 1.22195 0.97625 0.98887 1.02062 1.19484 0.92067 0.85751 0.91664 1.42497 1.61180 1.06662 1.26733 1.19913 1.29430 0.94394 1.01453 0.91790 1.25631 0.99128 0.95968 1.03507 1.70881 1.38991 1.37911 1.11276 0.83300 0.75276 0.76359 0.74411 1.21211 1.22469 1.22375 1.22273 0.94671 0.98984 1.01227 1.21673 0.94582 0.99725 0.84275 1.48012 1.40553 1.32509 1.09091 1.17923 0.80195 0.80172 0.87134 1.90756 1.58920 1.61113 1.31408 1.21502 0.96521 0.92117 0.92511 1.21715 0.97802 0.95278 0.99742 1.21449 0.96462 0.99757 0.91191 1.18961 1.00216 0.94906 0.95093 1.20987 0.99558 1.00129 0.91399 1.21000 0.98686 0.94172 0.98858 1.20950 0.97833 0.95814 0.97890 1.20960 0.98791 1.00033 0.90393 1.19047 0.97180 0.91801 0.92448 1.68034 1.13296 1.34722 0.98112 1.22758 0.93678 1.00914 0.86618 1.22156 0.95662 1.00158 0.99189 0.93341 0.94635 0.92488 0.79931 0.93485 0.90591 0.93427 0.90328 0.89418 0.83332 0.83710 0.85117 0.85407 0.85013 0.84115 0.85421 0.90873 0.92214 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.44 37.16 0.31 -2.42 16 2 C 0.20 3.88 0.74 -131.77 -0.10 3.79 16 3 N -0.73 -17.06 4.13 -47.19 -0.19 -17.25 16 4 C -0.32 -8.52 8.68 -15.06 -0.13 -8.65 16 5 H 0.06 1.69 6.70 -52.49 -0.35 1.34 16 6 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 7 N -0.94 -28.60 13.70 55.49 0.76 -27.84 16 8 Si 1.07 25.81 29.92 -169.99 -5.09 20.72 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.30 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.30 -6.85 7.11 56.52 0.40 -6.44 16 12 C -0.13 -2.45 4.70 -26.62 -0.13 -2.58 16 13 C 0.12 2.29 6.17 -3.72 -0.02 2.27 16 14 N -0.57 -10.27 2.97 -173.74 -0.52 -10.79 16 15 C 0.56 9.88 7.60 -12.13 -0.09 9.79 16 16 O -0.54 -10.70 15.93 5.36 0.09 -10.62 16 17 C 0.13 1.87 6.44 -82.95 -0.53 1.34 16 18 C -0.12 -1.48 9.53 -39.44 -0.38 -1.86 16 19 C -0.06 -0.59 9.88 -39.26 -0.39 -0.98 16 20 C -0.09 -0.92 5.75 -106.72 -0.61 -1.54 16 21 C -0.10 -0.78 9.77 -39.52 -0.39 -1.17 16 22 C -0.11 -0.76 9.96 -39.89 -0.40 -1.15 16 23 C -0.10 -0.82 9.94 -39.94 -0.40 -1.22 16 24 C -0.08 -0.86 9.99 -39.41 -0.39 -1.25 16 25 C 0.12 1.44 6.61 -84.86 -0.56 0.88 16 26 N -0.43 -6.16 6.33 -7.54 -0.05 -6.21 16 27 C 0.08 1.39 5.70 -3.71 -0.02 1.37 16 28 C -0.13 -2.21 4.96 -26.61 -0.13 -2.34 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.13 7.27 -51.93 -0.38 0.75 16 32 H 0.37 9.03 5.29 -40.82 -0.22 8.81 16 33 H 0.25 7.57 6.78 -40.82 -0.28 7.29 16 34 H 0.08 1.50 7.31 -51.93 -0.38 1.12 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.50 7.00 -51.93 -0.36 1.13 16 37 H 0.09 1.95 7.74 -51.93 -0.40 1.55 16 38 H 0.15 1.62 7.78 -52.48 -0.41 1.21 16 39 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.13 1.99 4.03 -77.69 -0.31 1.67 16 45 H 0.07 1.38 6.94 -51.93 -0.36 1.02 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -32.54 372.49 -10.31 -42.85 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.47 Total: 10.59 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -4.45 Total: -7.06 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.00 Total: -62.09 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.09 Total: 20.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.54 -10.31 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281527036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.418 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds