Wall clock time and date at job start Tue Mar 31 2020 22:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46148 * 2 1 4 4 C 1.36940 * 119.99802 * 60.00336 * 3 2 1 5 5 H 1.07997 * 119.99551 * 0.02562 * 4 3 2 6 6 C 1.38812 * 119.99552 * 179.97438 * 4 3 2 7 7 N 1.31611 * 120.00431 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99379 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47023 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47305 * 299.99968 * 8 6 4 11 11 H 1.48503 * 109.47097 * 60.00247 * 8 6 4 12 12 C 1.53038 * 109.46197 * 119.97640 * 2 1 3 13 13 C 1.53167 * 109.32971 * 181.38293 * 12 2 1 14 14 N 1.46928 * 108.76412 * 305.35421 * 13 12 2 15 15 C 1.34772 * 120.62896 * 233.58082 * 14 13 12 16 16 O 1.21508 * 120.00255 * 359.86432 * 15 14 13 17 17 C 1.48277 * 120.00093 * 179.86167 * 15 14 13 18 18 C 1.40278 * 119.23899 * 203.13761 * 17 15 14 19 19 C 1.36502 * 119.81262 * 179.97438 * 18 17 15 20 20 C 1.40756 * 118.24472 * 359.97438 * 19 18 17 21 21 C 1.40419 * 121.27313 * 180.02562 * 20 19 18 22 22 C 1.36133 * 119.65118 * 179.97438 * 21 20 19 23 23 C 1.39430 * 120.90959 * 0.02562 * 22 21 20 24 24 C 1.35993 * 121.08960 * 359.97438 * 23 22 21 25 25 C 1.40827 * 119.73571 * 359.97438 * 24 23 22 26 26 N 1.31878 * 119.24048 * 22.85912 * 17 15 14 27 27 C 1.46925 * 118.73741 * 53.61365 * 14 13 12 28 28 C 1.53045 * 109.45716 * 240.02952 * 2 1 3 29 29 H 1.08997 * 109.47017 * 59.99549 * 1 2 3 30 30 H 1.08995 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46502 * 299.99935 * 1 2 3 32 32 H 0.97001 * 119.99838 * 240.00090 * 3 2 1 33 33 H 0.97003 * 120.00292 * 359.97438 * 7 6 4 34 34 H 1.08996 * 109.49602 * 301.32486 * 12 2 1 35 35 H 1.09006 * 109.49959 * 61.41488 * 12 2 1 36 36 H 1.08998 * 109.59110 * 185.57090 * 13 12 2 37 37 H 1.08996 * 109.58844 * 65.13810 * 13 12 2 38 38 H 1.08003 * 120.09617 * 359.94360 * 18 17 15 39 39 H 1.08000 * 120.87843 * 179.97438 * 19 18 17 40 40 H 1.08004 * 120.17604 * 359.95906 * 21 20 19 41 41 H 1.08001 * 119.54655 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.45845 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.13700 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.58340 * 186.59814 * 27 14 13 45 45 H 1.08994 * 109.59035 * 66.17424 * 27 14 13 46 46 H 1.08996 * 109.49551 * 298.58041 * 28 2 1 47 47 H 1.08995 * 109.50075 * 58.64719 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6872 2.2244 1.0271 5 1 1.0667 1.8708 1.8373 6 6 2.1501 3.5330 1.0273 7 7 2.9067 3.9637 0.0402 8 14 1.6981 4.6832 2.4281 9 1 2.3135 6.0142 2.1938 10 1 0.2215 4.8250 2.4953 11 1 2.2006 4.1247 3.7090 12 6 2.0399 -0.7210 1.2499 13 6 3.5712 -0.6890 1.2644 14 7 4.0676 -1.2495 0.0002 15 6 4.9616 -2.2580 0.0002 16 8 5.3667 -2.7107 1.0525 17 6 5.4509 -2.8151 -1.2838 18 6 5.9649 -4.1200 -1.3130 19 6 6.4180 -4.6447 -2.4889 20 6 6.3510 -3.8447 -3.6450 21 6 6.7988 -4.3207 -4.8878 22 6 6.7180 -3.5189 -5.9850 23 6 6.1965 -2.2291 -5.8926 24 6 5.7533 -1.7341 -4.7061 25 6 5.8188 -2.5327 -3.5479 26 7 5.3878 -2.0744 -2.3731 27 6 3.5714 -0.6890 -1.2641 28 6 2.0398 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 2.5757 1.6986 -0.7275 33 1 3.1411 3.3665 -0.6874 34 1 1.6575 -0.2210 2.1397 35 1 1.6976 -1.7558 1.2382 36 1 3.9413 -1.2851 2.0986 37 1 3.9143 0.3404 1.3675 38 1 6.0024 -4.7077 -0.4077 39 1 6.8175 -5.6472 -2.5310 40 1 7.2054 -5.3177 -4.9729 41 1 7.0632 -3.8866 -6.9400 42 1 6.1438 -1.6128 -6.7780 43 1 5.3518 -0.7329 -4.6522 44 1 3.9416 -1.2850 -2.0983 45 1 3.9145 0.3404 -1.3672 46 1 1.6975 -1.7556 -1.2383 47 1 1.6570 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281527036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:34 Heat of formation + Delta-G solvation = 34.787636 kcal Electronic energy + Delta-G solvation = -29781.127974 eV Core-core repulsion = 25928.868708 eV Total energy + Delta-G solvation = -3852.259266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.30692 -41.05446 -39.43901 -37.91558 -36.34532 -34.77501 -34.28762 -32.42982 -31.62341 -31.03796 -30.55035 -29.24602 -26.43342 -25.76535 -24.88091 -24.25197 -23.91869 -23.07540 -21.65420 -20.21468 -19.08433 -19.00206 -18.74058 -18.06165 -17.37847 -16.81645 -16.55182 -16.28438 -15.97648 -15.62704 -15.46516 -15.32088 -15.23035 -15.13905 -14.80255 -14.50599 -14.35996 -14.21973 -14.04816 -13.58219 -13.33078 -12.85434 -12.74102 -12.70452 -12.62647 -12.58055 -12.46013 -12.29950 -12.17646 -11.92131 -11.85155 -11.59429 -11.48166 -11.45367 -11.05740 -10.85763 -10.12388 -9.93407 -9.69352 -9.26569 -9.00434 -8.27386 -5.20251 -0.87473 -0.36158 0.89062 1.32645 1.57957 1.67234 1.81324 1.82516 2.08949 2.74350 2.83021 3.03571 3.44724 3.49357 3.56876 3.66889 3.79698 3.81081 3.87342 3.96768 4.07708 4.16372 4.20053 4.24141 4.36366 4.37851 4.47859 4.51617 4.62303 4.74951 4.76436 4.88364 4.88880 4.92730 4.95155 4.96357 5.02896 5.05834 5.12150 5.21591 5.26929 5.37795 5.44628 5.49028 5.49444 5.59294 5.72984 5.86209 6.27592 6.53326 6.59588 6.92674 7.19327 8.10353 8.22861 9.24195 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.003124 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.514276 B = 8961.748296 C = 9643.815828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.192 3.808 3 N -0.735 5.735 4 C -0.302 4.302 5 H 0.066 0.934 6 C -0.108 4.108 7 N -0.981 5.981 8 Si 1.118 2.882 9 H -0.298 1.298 10 H -0.280 1.280 11 H -0.283 1.283 12 C -0.123 4.123 13 C 0.126 3.874 14 N -0.577 5.577 15 C 0.557 3.443 16 O -0.572 6.572 17 C 0.101 3.899 18 C -0.141 4.141 19 C -0.040 4.040 20 C -0.100 4.100 21 C -0.097 4.097 22 C -0.104 4.104 23 C -0.090 4.090 24 C -0.114 4.114 25 C 0.094 3.906 26 N -0.455 5.455 27 C 0.090 3.910 28 C -0.124 4.124 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.358 0.642 33 H 0.242 0.758 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.153 0.847 39 H 0.189 0.811 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 -22.348 -14.353 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.102 3.898 3 N -0.377 5.377 4 C -0.433 4.433 5 H 0.084 0.916 6 C -0.299 4.299 7 N -0.630 5.630 8 Si 0.945 3.055 9 H -0.225 1.225 10 H -0.206 1.206 11 H -0.210 1.210 12 C -0.163 4.163 13 C 0.004 3.996 14 N -0.307 5.307 15 C 0.345 3.655 16 O -0.452 6.452 17 C -0.050 4.050 18 C -0.162 4.162 19 C -0.065 4.065 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.110 4.110 24 C -0.133 4.133 25 C -0.029 4.029 26 N -0.168 5.168 27 C -0.032 4.032 28 C -0.162 4.162 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.191 0.809 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.171 0.829 39 H 0.206 0.794 40 H 0.185 0.815 41 H 0.182 0.818 42 H 0.175 0.825 43 H 0.150 0.850 44 H 0.164 0.836 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.174 -20.235 -13.029 24.846 hybrid contribution 0.132 -1.248 -0.281 1.286 sum 6.305 -21.484 -13.310 26.047 Atomic orbital electron populations 1.22096 0.96318 1.00683 1.00913 1.19799 0.92878 0.83843 0.93253 1.42661 1.61098 1.08201 1.25746 1.20160 1.27242 0.94449 1.01498 0.91634 1.26843 0.99743 0.98219 1.05092 1.70980 1.41663 1.38058 1.12334 0.82714 0.75886 0.74190 0.72661 1.22492 1.20614 1.21000 1.22175 0.93853 1.00026 1.00203 1.21388 0.95225 0.97537 0.85447 1.48036 1.41054 1.32945 1.08648 1.18456 0.79244 0.79516 0.88268 1.90713 1.59628 1.61971 1.32849 1.21134 0.99009 0.93560 0.91336 1.21772 0.98955 0.94232 1.01200 1.21905 0.93987 1.01050 0.89586 1.19285 0.99982 0.94107 0.96786 1.21417 0.98350 1.01722 0.90056 1.21478 0.97057 0.93281 1.00324 1.21346 0.95479 0.96612 0.97569 1.21059 1.01003 1.00109 0.91127 1.19389 0.98122 0.93427 0.91931 1.67725 1.14663 1.35500 0.98885 1.22750 0.93969 0.99532 0.86942 1.22098 0.95165 1.00983 0.97991 0.93820 0.91350 0.94257 0.80946 0.94772 0.91987 0.91064 0.90403 0.93362 0.82933 0.79354 0.81479 0.81754 0.82509 0.85027 0.83590 0.93907 0.89995 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.44 71.98 0.61 -4.45 16 2 C 0.19 7.44 0.74 3.63 0.00 7.44 16 3 N -0.73 -35.75 4.13 -303.22 -1.25 -37.01 16 4 C -0.30 -16.45 8.68 84.03 0.73 -15.72 16 5 H 0.07 3.51 6.70 -2.91 -0.02 3.50 16 6 C -0.11 -6.28 5.50 84.86 0.47 -5.81 16 7 N -0.98 -61.91 13.70 21.65 0.30 -61.61 16 8 Si 1.12 53.27 29.92 68.60 2.05 55.32 16 9 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 C -0.12 -4.62 4.70 30.66 0.14 -4.48 16 13 C 0.13 5.14 6.17 86.35 0.53 5.67 16 14 N -0.58 -21.71 2.97 -821.88 -2.44 -24.15 16 15 C 0.56 20.49 7.60 86.92 0.66 21.16 16 16 O -0.57 -23.39 15.93 -3.74 -0.06 -23.45 16 17 C 0.10 3.05 6.44 42.31 0.27 3.32 16 18 C -0.14 -3.22 9.53 22.36 0.21 -3.01 16 19 C -0.04 -0.63 9.88 22.48 0.22 -0.41 16 20 C -0.10 -1.77 5.75 -21.22 -0.12 -1.89 16 21 C -0.10 -1.01 9.77 22.31 0.22 -0.80 16 22 C -0.10 -0.94 9.96 22.07 0.22 -0.72 16 23 C -0.09 -1.14 9.94 22.04 0.22 -0.92 16 24 C -0.11 -2.27 9.99 22.38 0.22 -2.04 16 25 C 0.09 2.24 6.61 40.47 0.27 2.51 16 26 N -0.46 -13.39 6.33 -177.77 -1.13 -14.51 16 27 C 0.09 3.17 5.70 86.36 0.49 3.67 16 28 C -0.12 -4.10 4.96 30.67 0.15 -3.94 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.53 7.27 -2.39 -0.02 1.51 16 32 H 0.36 18.64 5.29 -92.71 -0.49 18.15 16 33 H 0.24 15.25 6.78 -92.71 -0.63 14.62 16 34 H 0.06 2.49 7.31 -2.39 -0.02 2.47 16 35 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.08 3.13 7.00 -2.39 -0.02 3.11 16 37 H 0.05 2.32 7.74 -2.39 -0.02 2.30 16 38 H 0.15 3.24 7.78 -2.91 -0.02 3.21 16 39 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 41 H 0.16 0.36 8.06 -2.91 -0.02 0.33 16 42 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.15 4.72 4.03 -53.26 -0.21 4.51 16 45 H 0.04 1.75 6.94 -2.39 -0.02 1.73 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 47 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -75.34 372.49 3.44 -71.90 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.44 Total: 33.92 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.52 Total: -0.41 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -4.52 Total: -137.28 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 2.05 Total: 55.32 kcal Total: -75.34 3.44 -71.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281527036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.688 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds