Wall clock time and date at job start Tue Mar 31 2020 23:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.35834 * 126.46188 * 2 1 4 4 H 0.97000 * 124.91430 * 359.97438 * 3 2 1 5 5 N 1.28455 * 110.16670 * 179.97438 * 3 2 1 6 6 C 1.31933 * 110.21190 * 0.02562 * 5 3 2 7 7 C 1.47523 * 126.45767 * 180.02562 * 6 5 3 8 8 O 1.21592 * 119.99409 * 179.97438 * 7 6 5 9 9 N 1.34769 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00180 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47243 * 175.18863 * 10 9 7 12 12 H 1.09004 * 109.47127 * 295.31583 * 11 10 9 13 13 C 1.53005 * 109.47376 * 175.32066 * 11 10 9 14 14 N 1.46896 * 109.47426 * 55.31898 * 11 10 9 15 15 C 1.46898 * 111.00404 * 192.49413 * 14 11 10 16 16 C 1.46901 * 111.00003 * 68.53923 * 14 11 10 17 17 C 1.50705 * 109.47165 * 190.00417 * 16 14 11 18 18 O 1.21294 * 119.99781 * 359.97438 * 17 16 14 19 19 N 1.34780 * 119.99760 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99689 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99852 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99873 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47122 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47199 * 120.00060 * 24 22 20 27 27 H 1.48498 * 109.47434 * 239.99851 * 24 22 20 28 28 C 1.35776 * 126.45692 * 179.69254 * 2 1 3 29 29 O 1.36084 * 127.26783 * 359.97438 * 28 2 1 30 30 H 1.08993 * 109.47156 * 90.01503 * 1 2 3 31 31 H 1.08998 * 109.46800 * 330.02031 * 1 2 3 32 32 H 1.08995 * 109.47442 * 210.02302 * 1 2 3 33 33 H 0.97008 * 119.99717 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47397 * 295.18629 * 10 9 7 35 35 H 1.09003 * 109.47044 * 55.19276 * 10 9 7 36 36 H 1.09001 * 109.47042 * 59.99364 * 13 11 10 37 37 H 1.08999 * 109.47520 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.46599 * 299.99841 * 13 11 10 39 39 H 1.09001 * 109.47049 * 53.76424 * 15 14 11 40 40 H 1.09003 * 109.46821 * 173.75932 * 15 14 11 41 41 H 1.08992 * 109.47330 * 293.76288 * 15 14 11 42 42 H 1.09000 * 109.47206 * 310.00483 * 16 14 11 43 43 H 1.09001 * 109.47186 * 70.00296 * 16 14 11 44 44 H 0.96997 * 119.99709 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99377 * 180.02562 * 23 22 20 46 46 H 0.96703 * 114.00212 * 90.00697 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0924 0.0000 4 1 2.0046 2.0116 -0.0004 5 7 3.5473 0.7320 0.0005 6 6 3.6374 -0.5842 0.0004 7 6 4.8810 -1.3778 0.0014 8 8 4.8270 -2.5925 0.0016 9 7 6.0769 -0.7564 0.0021 10 6 7.3119 -1.5444 0.0036 11 6 8.5151 -0.6071 -0.1168 12 1 8.4891 -0.1048 -1.0839 13 6 9.8072 -1.4180 0.0020 14 7 8.4652 0.3944 0.9567 15 6 9.4225 1.4806 0.7084 16 6 8.7014 -0.2262 2.2670 17 6 8.4024 0.7713 3.3565 18 8 8.0297 1.8893 3.0695 19 7 8.5502 0.4212 4.6496 20 6 8.2777 1.3285 5.6407 21 1 7.9451 2.3237 5.3852 22 6 8.4306 0.9679 6.9738 23 7 8.8359 -0.2430 7.2846 24 14 8.0600 2.2041 8.3242 25 1 7.6242 3.4865 7.7153 26 1 6.9792 1.6766 9.1953 27 1 9.2826 2.4323 9.1356 28 6 2.3139 -1.0920 0.0059 29 8 1.9325 -2.3983 0.0134 30 1 -0.3633 -0.0003 -1.0276 31 1 -0.3633 0.8902 0.5135 32 1 -0.3634 -0.8897 0.5142 33 1 6.1199 0.2127 0.0016 34 1 7.3821 -2.1080 0.9340 35 1 7.3033 -2.2349 -0.8398 36 1 9.8443 -2.1611 -0.7946 37 1 10.6645 -0.7502 -0.0834 38 1 9.8333 -1.9203 0.9690 39 1 9.2513 1.8958 -0.2848 40 1 9.2879 2.2616 1.4568 41 1 10.4384 1.0904 0.7689 42 1 8.0516 -1.0939 2.3806 43 1 9.7428 -0.5404 2.3378 44 1 8.8486 -0.4727 4.8790 45 1 8.9422 -0.4948 8.2153 46 1 1.8221 -2.7809 -0.8679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282373429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:25 Heat of formation + Delta-G solvation = -29.773584 kcal Electronic energy + Delta-G solvation = -29884.952611 eV Core-core repulsion = 25619.044497 eV Total energy + Delta-G solvation = -4265.908114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.80558 -39.55610 -38.64426 -37.33430 -37.07434 -34.23484 -33.74546 -32.84325 -31.31078 -31.19741 -30.66197 -28.01699 -27.18577 -26.62268 -24.97375 -24.11568 -23.21189 -21.46873 -20.40666 -19.84394 -18.83894 -18.37974 -17.76137 -17.28648 -16.90227 -16.58690 -16.01719 -15.82980 -15.23994 -14.74692 -14.55295 -14.48513 -14.31638 -14.03999 -13.94131 -13.82960 -13.49045 -13.37463 -13.28609 -12.83947 -12.68005 -12.62457 -12.22160 -12.00488 -11.78362 -11.75929 -11.44368 -11.20660 -11.11644 -10.84181 -10.72776 -10.49671 -10.31992 -10.18788 -9.92971 -9.49049 -9.44599 -8.88833 -8.80153 -8.41976 -7.93727 -7.80782 -6.37645 -3.78187 1.47284 1.74051 2.56344 3.18507 3.24487 3.28661 3.35613 3.48021 3.95125 4.00430 4.13625 4.27872 4.42658 4.52822 4.75662 4.83757 5.01535 5.12775 5.15430 5.25849 5.29360 5.32978 5.46904 5.52746 5.54365 5.56008 5.65400 5.81283 5.84000 5.92443 5.98256 5.99694 6.07422 6.19428 6.33172 6.55538 6.62390 6.73675 7.27767 7.38665 7.52894 7.58616 7.59061 7.85717 8.10790 8.39711 8.66392 9.22475 9.59432 10.11329 10.80327 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008822 B = 0.003269 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.269926 B = 8564.230120 C =10472.210248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.015 4.015 3 N -0.373 5.373 4 H 0.450 0.550 5 N -0.233 5.233 6 C -0.027 4.027 7 C 0.600 3.400 8 O -0.534 6.534 9 N -0.699 5.699 10 C 0.129 3.871 11 C 0.064 3.936 12 H 0.089 0.911 13 C -0.185 4.185 14 N -0.511 5.511 15 C 0.022 3.978 16 C 0.041 3.959 17 C 0.446 3.554 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.045 3.955 29 O -0.451 6.451 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.417 0.583 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 -1.552 -19.167 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 N -0.090 5.090 4 H 0.296 0.704 5 N -0.070 5.070 6 C -0.189 4.189 7 C 0.383 3.617 8 O -0.410 6.410 9 N -0.351 5.351 10 C 0.005 3.995 11 C -0.045 4.045 12 H 0.107 0.893 13 C -0.244 4.244 14 N -0.235 5.235 15 C -0.126 4.126 16 C -0.090 4.090 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.755 3.245 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.011 4.011 29 O -0.255 6.255 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.255 0.745 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.036 0.964 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.184 -0.605 -18.542 21.163 hybrid contribution 0.280 -0.201 0.534 0.635 sum -9.904 -0.806 -18.008 20.567 Atomic orbital electron populations 1.20300 0.86058 1.04317 1.03176 1.21554 0.95401 0.87476 1.09650 1.43090 1.02868 1.09302 1.53784 0.70450 1.73711 1.01514 1.14132 1.17658 1.22399 0.95410 0.90022 1.11048 1.16762 0.81706 0.86341 0.76844 1.90799 1.86814 1.12692 1.50653 1.45673 1.04326 1.11755 1.73374 1.21436 0.82448 0.93302 1.02335 1.22049 0.93415 0.92801 0.96223 0.89325 1.22406 0.98105 1.00920 1.02982 1.61775 1.51711 1.09741 1.00259 1.22544 0.91966 0.95385 1.02659 1.21942 1.00090 0.97557 0.89391 1.19738 0.84682 0.89068 0.83376 1.90470 1.51282 1.22118 1.82323 1.41869 1.59179 1.14999 1.04163 1.19727 1.41923 0.96078 0.84911 0.87930 1.25252 0.97374 0.96967 0.98422 1.69627 1.46993 1.18328 1.19364 0.85820 0.77932 0.80342 0.80357 1.19279 1.20781 1.20804 1.17776 0.89056 0.85025 1.09236 1.84917 1.88760 1.19170 1.32698 0.90397 0.90876 0.89274 0.74543 0.91348 0.90861 0.91864 0.91892 0.91604 0.92355 0.88455 0.96419 0.89433 0.93067 0.77552 0.91971 0.76149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.44 36.01 0.38 -0.09 16 2 C -0.02 -0.15 7.27 -81.70 -0.59 -0.74 16 3 N -0.37 -3.70 6.87 33.71 0.23 -3.46 16 4 H 0.45 2.70 8.96 -190.45 -1.71 0.99 16 5 N -0.23 -3.19 11.91 33.45 0.40 -2.79 16 6 C -0.03 -0.41 7.13 -82.69 -0.59 -1.00 16 7 C 0.60 9.95 7.82 -12.48 -0.10 9.85 16 8 O -0.53 -10.04 16.52 3.10 0.05 -9.99 16 9 N -0.70 -10.46 5.41 -61.36 -0.33 -10.80 16 10 C 0.13 1.72 4.94 -4.04 -0.02 1.70 16 11 C 0.06 0.79 2.47 -67.71 -0.17 0.62 16 12 H 0.09 0.97 7.93 -51.93 -0.41 0.56 16 13 C -0.18 -1.97 8.42 37.16 0.31 -1.66 16 14 N -0.51 -8.08 3.82 -236.33 -0.90 -8.98 16 15 C 0.02 0.34 8.90 60.06 0.53 0.88 16 16 C 0.04 0.74 4.31 -4.97 -0.02 0.72 16 17 C 0.45 10.60 7.52 -10.98 -0.08 10.52 16 18 O -0.58 -15.41 13.88 5.55 0.08 -15.33 16 19 N -0.57 -14.62 5.29 -10.96 -0.06 -14.67 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 24 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.04 0.59 7.28 -39.12 -0.28 0.31 16 29 O -0.45 -5.67 13.20 -22.19 -0.29 -5.96 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.42 6.36 7.79 -40.82 -0.32 6.04 16 34 H 0.07 1.01 6.65 -51.93 -0.35 0.66 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.67 6.92 -51.93 -0.36 0.31 16 38 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 39 H 0.06 0.76 7.98 -51.93 -0.41 0.34 16 40 H 0.10 1.86 5.92 -51.93 -0.31 1.55 16 41 H 0.02 0.25 6.96 -51.93 -0.36 -0.11 16 42 H 0.09 1.54 6.30 -51.93 -0.33 1.21 16 43 H 0.05 0.85 6.81 -51.93 -0.35 0.49 16 44 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.38 3.02 9.07 45.56 0.41 3.43 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -36.58 384.42 -6.99 -43.57 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -6.78 Total: 17.52 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.87 Total: 13.05 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: 0.06 Total: -65.04 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.16 Total: -31.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.58 -6.99 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282373429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.798 kcal (2) G-P(sol) polarization free energy of solvation -36.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds