Wall clock time and date at job start Tue Mar 31 2020 23:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.35834 * 126.46188 * 2 1 4 4 H 0.97000 * 124.91430 * 359.97438 * 3 2 1 5 5 N 1.28455 * 110.16670 * 179.97438 * 3 2 1 6 6 C 1.31933 * 110.21190 * 0.02562 * 5 3 2 7 7 C 1.47523 * 126.45767 * 180.02562 * 6 5 3 8 8 O 1.21592 * 119.99409 * 179.97438 * 7 6 5 9 9 N 1.34769 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00180 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47243 * 175.18863 * 10 9 7 12 12 H 1.09004 * 109.47127 * 295.31583 * 11 10 9 13 13 C 1.53005 * 109.47376 * 175.32066 * 11 10 9 14 14 N 1.46896 * 109.47426 * 55.31898 * 11 10 9 15 15 C 1.46898 * 111.00404 * 192.49413 * 14 11 10 16 16 C 1.46901 * 111.00003 * 68.53923 * 14 11 10 17 17 C 1.50705 * 109.47165 * 190.00417 * 16 14 11 18 18 O 1.21294 * 119.99781 * 359.97438 * 17 16 14 19 19 N 1.34780 * 119.99760 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99689 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99852 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99873 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47122 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47199 * 120.00060 * 24 22 20 27 27 H 1.48498 * 109.47434 * 239.99851 * 24 22 20 28 28 C 1.35776 * 126.45692 * 179.69254 * 2 1 3 29 29 O 1.36084 * 127.26783 * 359.97438 * 28 2 1 30 30 H 1.08993 * 109.47156 * 90.01503 * 1 2 3 31 31 H 1.08998 * 109.46800 * 330.02031 * 1 2 3 32 32 H 1.08995 * 109.47442 * 210.02302 * 1 2 3 33 33 H 0.97008 * 119.99717 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47397 * 295.18629 * 10 9 7 35 35 H 1.09003 * 109.47044 * 55.19276 * 10 9 7 36 36 H 1.09001 * 109.47042 * 59.99364 * 13 11 10 37 37 H 1.08999 * 109.47520 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.46599 * 299.99841 * 13 11 10 39 39 H 1.09001 * 109.47049 * 53.76424 * 15 14 11 40 40 H 1.09003 * 109.46821 * 173.75932 * 15 14 11 41 41 H 1.08992 * 109.47330 * 293.76288 * 15 14 11 42 42 H 1.09000 * 109.47206 * 310.00483 * 16 14 11 43 43 H 1.09001 * 109.47186 * 70.00296 * 16 14 11 44 44 H 0.96997 * 119.99709 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99377 * 180.02562 * 23 22 20 46 46 H 0.96703 * 114.00212 * 90.00697 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0924 0.0000 4 1 2.0046 2.0116 -0.0004 5 7 3.5473 0.7320 0.0005 6 6 3.6374 -0.5842 0.0004 7 6 4.8810 -1.3778 0.0014 8 8 4.8270 -2.5925 0.0016 9 7 6.0769 -0.7564 0.0021 10 6 7.3119 -1.5444 0.0036 11 6 8.5151 -0.6071 -0.1168 12 1 8.4891 -0.1048 -1.0839 13 6 9.8072 -1.4180 0.0020 14 7 8.4652 0.3944 0.9567 15 6 9.4225 1.4806 0.7084 16 6 8.7014 -0.2262 2.2670 17 6 8.4024 0.7713 3.3565 18 8 8.0297 1.8893 3.0695 19 7 8.5502 0.4212 4.6496 20 6 8.2777 1.3285 5.6407 21 1 7.9451 2.3237 5.3852 22 6 8.4306 0.9679 6.9738 23 7 8.8359 -0.2430 7.2846 24 14 8.0600 2.2041 8.3242 25 1 7.6242 3.4865 7.7153 26 1 6.9792 1.6766 9.1953 27 1 9.2826 2.4323 9.1356 28 6 2.3139 -1.0920 0.0059 29 8 1.9325 -2.3983 0.0134 30 1 -0.3633 -0.0003 -1.0276 31 1 -0.3633 0.8902 0.5135 32 1 -0.3634 -0.8897 0.5142 33 1 6.1199 0.2127 0.0016 34 1 7.3821 -2.1080 0.9340 35 1 7.3033 -2.2349 -0.8398 36 1 9.8443 -2.1611 -0.7946 37 1 10.6645 -0.7502 -0.0834 38 1 9.8333 -1.9203 0.9690 39 1 9.2513 1.8958 -0.2848 40 1 9.2879 2.2616 1.4568 41 1 10.4384 1.0904 0.7689 42 1 8.0516 -1.0939 2.3806 43 1 9.7428 -0.5404 2.3378 44 1 8.8486 -0.4727 4.8790 45 1 8.9422 -0.4948 8.2153 46 1 1.8221 -2.7809 -0.8679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282373429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:24 Heat of formation + Delta-G solvation = -62.652714 kcal Electronic energy + Delta-G solvation = -29886.378357 eV Core-core repulsion = 25619.044497 eV Total energy + Delta-G solvation = -4267.333860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.72409 -40.87460 -40.17265 -38.69724 -38.16616 -35.98567 -35.28904 -33.67070 -33.27065 -32.27602 -31.70584 -29.55644 -27.98937 -27.56061 -26.75348 -25.47469 -24.35605 -22.36349 -21.84499 -21.04697 -20.45610 -19.72468 -19.27854 -18.24458 -18.11220 -17.94912 -17.01923 -17.00961 -16.76966 -16.47239 -16.00603 -15.89544 -15.53387 -15.39811 -15.19045 -14.97777 -14.78659 -14.65538 -14.05145 -13.90137 -13.77246 -13.62001 -13.47354 -13.31575 -13.05400 -13.01895 -12.83248 -12.68212 -12.45757 -12.39507 -12.15775 -12.12580 -11.78322 -11.54372 -11.45262 -11.08665 -10.48700 -10.26935 -9.99495 -9.98796 -9.73261 -9.16318 -8.46372 -5.94900 0.42231 0.86467 1.35319 1.39635 1.54157 1.77601 2.06560 2.16220 2.28044 2.31322 2.78913 3.16075 3.20460 3.40882 3.67962 3.73931 3.77018 3.98687 4.06456 4.22580 4.30269 4.36846 4.42259 4.51160 4.59392 4.65699 4.68519 4.76050 4.77009 4.84353 4.91051 5.00111 5.02295 5.20594 5.25173 5.29102 5.40745 5.44748 5.88835 6.00790 6.07982 6.22638 6.47900 6.60960 6.76745 6.82954 7.13549 7.17930 7.57297 8.13122 8.71589 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008822 B = 0.003269 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.269926 B = 8564.230120 C =10472.210248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.009 3.991 3 N -0.356 5.356 4 H 0.467 0.533 5 N -0.253 5.253 6 C -0.061 4.061 7 C 0.593 3.407 8 O -0.567 6.567 9 N -0.695 5.695 10 C 0.127 3.873 11 C 0.073 3.927 12 H 0.111 0.889 13 C -0.180 4.180 14 N -0.526 5.526 15 C 0.028 3.972 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.609 6.609 19 N -0.578 5.578 20 C -0.329 4.329 21 H 0.080 0.920 22 C -0.016 4.016 23 N -0.923 5.923 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.269 1.269 28 C 0.015 3.985 29 O -0.465 6.465 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.416 0.584 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.393 0.607 45 H 0.276 0.724 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 -1.200 -20.176 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 N -0.076 5.076 4 H 0.316 0.684 5 N -0.091 5.091 6 C -0.221 4.221 7 C 0.378 3.622 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.003 3.997 11 C -0.035 4.035 12 H 0.129 0.871 13 C -0.240 4.240 14 N -0.251 5.251 15 C -0.120 4.120 16 C -0.074 4.074 17 C 0.231 3.769 18 O -0.495 6.495 19 N -0.216 5.216 20 C -0.459 4.459 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.195 1.195 28 C -0.041 4.041 29 O -0.273 6.273 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.253 0.747 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.227 0.773 45 H 0.086 0.914 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.856 -0.245 -19.580 22.389 hybrid contribution 0.425 -0.279 0.750 0.907 sum -10.431 -0.525 -18.829 21.532 Atomic orbital electron populations 1.20493 0.82688 1.05304 1.05112 1.22083 0.97020 0.86154 1.06577 1.43229 1.01960 1.10405 1.52036 0.68389 1.73624 1.03330 1.13608 1.18587 1.22400 0.95711 0.90772 1.13223 1.17079 0.82584 0.86214 0.76320 1.90756 1.87384 1.13909 1.52429 1.45728 1.04578 1.11675 1.72635 1.21562 0.82326 0.93626 1.02172 1.22089 0.93690 0.92105 0.95609 0.87119 1.22368 0.96938 1.01228 1.03416 1.61687 1.52386 1.10919 1.00059 1.22422 0.92662 0.94241 1.02653 1.21729 1.01215 0.95657 0.88757 1.20768 0.82733 0.89605 0.83832 1.90451 1.52146 1.23949 1.82919 1.41964 1.60077 1.14786 1.04753 1.19688 1.43874 0.95942 0.86381 0.90248 1.26054 0.96634 0.98829 0.99999 1.69695 1.47038 1.19500 1.20202 0.84874 0.78263 0.77797 0.77422 1.19651 1.19834 1.19461 1.18068 0.89012 0.85956 1.11014 1.84857 1.88614 1.19350 1.34445 0.87848 0.88626 0.89469 0.74739 0.92983 0.89259 0.89540 0.91317 0.92520 0.89700 0.92644 0.94937 0.88989 0.91069 0.77336 0.91410 0.74295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.44 71.24 0.74 0.07 16 2 C 0.01 0.16 7.27 41.37 0.30 0.46 16 3 N -0.36 -6.61 6.87 -47.26 -0.32 -6.93 16 4 H 0.47 4.72 8.96 -220.00 -1.97 2.74 16 5 N -0.25 -6.91 11.91 -48.09 -0.57 -7.48 16 6 C -0.06 -1.88 7.13 42.45 0.30 -1.57 16 7 C 0.59 20.22 7.82 86.69 0.68 20.89 16 8 O -0.57 -21.96 16.52 -1.91 -0.03 -21.99 16 9 N -0.70 -20.96 5.41 -466.30 -2.52 -23.49 16 10 C 0.13 3.29 4.94 86.38 0.43 3.72 16 11 C 0.07 1.65 2.47 44.92 0.11 1.76 16 12 H 0.11 2.08 7.93 -2.38 -0.02 2.06 16 13 C -0.18 -3.37 8.42 71.98 0.61 -2.76 16 14 N -0.53 -16.19 3.82 -901.61 -3.45 -19.63 16 15 C 0.03 0.83 8.90 127.69 1.14 1.96 16 16 C 0.06 2.06 4.31 85.56 0.37 2.43 16 17 C 0.44 21.62 7.52 87.66 0.66 22.28 16 18 O -0.61 -33.59 13.88 -3.07 -0.04 -33.63 16 19 N -0.58 -30.79 5.29 -306.97 -1.62 -32.41 16 20 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.02 -0.87 5.50 84.92 0.47 -0.41 16 23 N -0.92 -51.48 13.05 21.66 0.28 -51.19 16 24 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 C 0.02 0.40 7.28 22.57 0.16 0.57 16 29 O -0.47 -11.79 13.20 -92.41 -1.22 -13.01 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.42 12.76 7.79 -92.70 -0.72 12.04 16 34 H 0.05 1.53 6.65 -2.39 -0.02 1.52 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.24 6.92 -2.39 -0.02 1.22 16 38 H 0.06 1.18 6.54 -2.38 -0.02 1.16 16 39 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 40 H 0.05 2.15 5.92 -2.39 -0.01 2.13 16 41 H 0.03 0.86 6.96 -2.39 -0.02 0.84 16 42 H 0.09 3.25 6.30 -2.39 -0.02 3.23 16 43 H 0.07 2.28 6.81 -2.39 -0.02 2.27 16 44 H 0.39 20.21 7.90 -92.71 -0.73 19.47 16 45 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.40 6.35 9.07 -74.06 -0.67 5.68 16 Total: -1.00 -82.10 384.42 -3.71 -85.81 By element: Atomic # 1 Polarization: 49.85 SS G_CDS: -3.01 Total: 46.84 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 6.78 Total: 31.03 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -8.21 Total: -141.13 kcal Atomic # 8 Polarization: -67.34 SS G_CDS: -1.29 Total: -68.63 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -82.10 -3.71 -85.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282373429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.156 kcal (2) G-P(sol) polarization free energy of solvation -82.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds