Wall clock time and date at job start Tue Mar 31 2020 23:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33321 * 126.10664 * 2 1 4 4 C 1.30857 * 109.68594 * 180.27178 * 3 2 1 5 5 N 1.34497 * 109.16203 * 359.76824 * 4 3 2 6 6 C 1.46502 * 126.47072 * 180.02562 * 5 4 3 7 7 C 1.36658 * 126.10830 * 179.87498 * 2 1 3 8 8 C 1.46761 * 126.84360 * 0.02562 * 7 2 1 9 9 O 1.21676 * 120.00561 * 279.11554 * 8 7 2 10 10 N 1.34778 * 119.99866 * 99.12029 * 8 7 2 11 11 C 1.46504 * 120.00179 * 174.85578 * 10 8 7 12 12 C 1.52998 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47195 * 294.99567 * 12 11 10 14 14 C 1.53002 * 109.46812 * 174.99645 * 12 11 10 15 15 O 1.42894 * 109.47295 * 304.99887 * 14 12 11 16 16 N 1.46898 * 109.47415 * 55.00015 * 12 11 10 17 17 C 1.46904 * 111.00114 * 204.99866 * 16 12 11 18 18 C 1.50694 * 109.47225 * 179.97438 * 17 16 12 19 19 O 1.21298 * 120.00209 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00057 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00253 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99895 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00067 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00005 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47057 * 90.00058 * 25 23 21 27 27 H 1.48499 * 109.47424 * 210.00190 * 25 23 21 28 28 H 1.48503 * 109.47118 * 330.00342 * 25 23 21 29 29 H 1.08998 * 109.47006 * 270.12422 * 1 2 3 30 30 H 1.08996 * 109.46963 * 30.12561 * 1 2 3 31 31 H 1.08998 * 109.47050 * 150.12493 * 1 2 3 32 32 H 1.08003 * 125.42002 * 179.78341 * 4 3 2 33 33 H 1.09001 * 109.46794 * 274.89151 * 6 5 4 34 34 H 1.09000 * 109.47326 * 34.89301 * 6 5 4 35 35 H 1.09003 * 109.47194 * 154.90058 * 6 5 4 36 36 H 0.96998 * 120.00164 * 355.12361 * 10 8 7 37 37 H 1.09004 * 109.46931 * 299.99727 * 11 10 8 38 38 H 1.08994 * 109.47416 * 59.99406 * 11 10 8 39 39 H 1.09004 * 109.47244 * 65.00163 * 14 12 11 40 40 H 1.09003 * 109.46888 * 184.99772 * 14 12 11 41 41 H 0.96708 * 113.99769 * 180.02562 * 15 14 12 42 42 H 1.00904 * 110.99562 * 328.94983 * 16 12 11 43 43 H 1.08999 * 109.46689 * 299.99844 * 17 16 12 44 44 H 1.09000 * 109.46835 * 59.99759 * 17 16 12 45 45 H 0.97002 * 120.00285 * 0.02562 * 20 18 17 46 46 H 0.96998 * 120.00023 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7072 -0.0058 5 7 3.6122 -0.6362 -0.0047 6 6 4.8306 -1.4497 -0.0094 7 6 2.3124 -1.1041 0.0024 8 6 1.8821 -2.5072 0.0049 9 8 1.5437 -3.0380 1.0462 10 7 1.8618 -3.2079 -1.1462 11 6 1.5414 -4.6373 -1.1281 12 6 1.5864 -5.1881 -2.5548 13 1 0.7990 -4.7237 -3.1486 14 6 1.3750 -6.7032 -2.5234 15 8 2.3369 -7.3003 -1.6516 16 7 2.8934 -4.8884 -3.1545 17 6 2.8023 -4.8426 -4.6200 18 6 4.1589 -4.5329 -5.1983 19 8 5.1086 -4.3671 -4.4621 20 7 4.3173 -4.4411 -6.5335 21 6 5.5517 -4.1598 -7.0597 22 1 6.3972 -4.0122 -6.4042 23 6 5.7148 -4.0647 -8.4363 24 7 4.6859 -4.2438 -9.2339 25 14 7.3968 -3.6821 -9.1532 26 1 8.1281 -4.9501 -9.4040 27 1 7.2340 -2.9435 -10.4312 28 1 8.1657 -2.8486 -8.1943 29 1 -0.3633 0.0022 1.0276 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3633 -0.8911 -0.5119 32 1 4.3971 1.3745 -0.0106 33 1 5.1767 -1.5796 -1.0348 34 1 5.6035 -0.9498 0.5745 35 1 4.6180 -2.4250 0.4286 36 1 2.0632 -2.7666 -1.9862 37 1 2.2690 -5.1650 -0.5115 38 1 0.5431 -4.7807 -0.7150 39 1 0.3706 -6.9225 -2.1612 40 1 1.4951 -7.1076 -3.5285 41 1 2.2622 -8.2621 -1.5833 42 1 3.2701 -4.0268 -2.7885 43 1 2.4596 -5.8078 -4.9930 44 1 2.0958 -4.0671 -4.9160 45 1 3.5580 -4.5741 -7.1224 46 1 4.7998 -4.1770 -10.1949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283771964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:47 Heat of formation + Delta-G solvation = -51.558957 kcal Electronic energy + Delta-G solvation = -29698.438257 eV Core-core repulsion = 25431.585459 eV Total energy + Delta-G solvation = -4266.852799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38096 -39.74013 -38.54144 -37.56995 -35.64009 -34.65584 -34.20017 -33.67960 -31.62403 -31.29593 -30.22206 -28.59859 -26.53320 -26.40157 -25.70963 -24.04934 -22.79243 -20.89764 -20.68440 -20.05637 -19.37917 -18.12653 -17.87632 -17.54817 -16.77476 -16.53554 -15.86777 -15.70306 -15.55506 -15.43033 -14.86614 -14.59357 -14.36878 -14.22662 -13.94144 -13.78095 -13.71070 -13.54190 -13.35313 -13.16213 -12.87022 -12.57067 -12.49500 -12.36007 -12.27361 -11.89721 -11.67025 -11.54163 -11.15603 -11.08515 -10.66176 -10.45232 -10.28936 -10.06829 -9.98003 -9.79063 -9.58031 -9.33206 -8.58982 -8.55465 -8.20127 -8.03738 -6.48752 -3.89864 1.48965 1.99887 2.64986 2.80496 3.05782 3.12594 3.21907 3.26976 3.80846 3.91603 4.16582 4.24533 4.29816 4.41999 4.50640 4.60642 4.85689 4.87169 4.93798 5.04381 5.10164 5.16595 5.20368 5.26637 5.29774 5.48936 5.52252 5.55089 5.62079 5.64308 5.74825 5.82571 5.89195 5.96732 6.10306 6.17116 6.38508 6.86236 7.03072 7.12637 7.43971 7.48348 7.67338 7.77691 7.86657 7.98379 8.53084 9.10489 9.46052 9.96980 10.68822 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.003011 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.933007 B = 9297.254158 C =11151.482831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.059 3.941 3 N -0.494 5.494 4 C 0.204 3.796 5 N -0.435 5.435 6 C 0.064 3.936 7 C -0.085 4.085 8 C 0.603 3.397 9 O -0.521 6.521 10 N -0.720 5.720 11 C 0.121 3.879 12 C 0.075 3.925 13 H 0.062 0.938 14 C 0.092 3.908 15 O -0.555 6.555 16 N -0.652 5.652 17 C 0.047 3.953 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.212 0.788 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.401 0.599 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.374 0.626 42 H 0.346 0.654 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 2.054 14.321 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 N -0.212 5.212 4 C -0.078 4.078 5 N -0.117 5.117 6 C -0.078 4.078 7 C -0.202 4.202 8 C 0.386 3.614 9 O -0.395 6.395 10 N -0.373 5.373 11 C -0.002 4.002 12 C -0.036 4.036 13 H 0.080 0.920 14 C 0.012 3.988 15 O -0.359 6.359 16 N -0.287 5.287 17 C -0.086 4.086 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.198 5.198 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.229 0.771 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.220 0.780 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.262 2.439 15.452 17.691 hybrid contribution 0.279 -0.285 -1.648 1.696 sum -7.982 2.154 13.804 16.090 Atomic orbital electron populations 1.20115 0.87134 1.02852 1.02830 1.20840 0.96380 0.86830 1.03357 1.70019 1.00399 1.30015 1.20790 1.25028 0.97205 0.81681 1.03888 1.45336 1.05934 1.07824 1.52616 1.22274 0.84286 0.96211 1.05037 1.20646 0.85069 0.94839 1.19608 1.16811 0.77747 0.83212 0.83642 1.90848 1.47284 1.69741 1.31673 1.46110 1.70953 1.10751 1.09470 1.21562 1.02456 0.79019 0.97164 1.21900 0.92044 0.95414 0.94194 0.92003 1.22065 0.90642 0.92152 0.93900 1.86592 1.57252 1.24665 1.67354 1.60039 1.22091 1.42204 1.04392 1.21799 0.96966 1.01447 0.88346 1.19726 0.89662 0.84877 0.83229 1.90524 1.41519 1.55521 1.59110 1.41858 1.11454 1.61729 1.04774 1.19692 0.87697 1.44908 0.90710 0.87927 1.25265 0.99246 0.97340 0.96000 1.69608 1.30298 1.49714 1.04567 0.85858 0.81541 0.78620 0.78277 1.20345 1.20886 1.19421 0.90723 0.90473 0.91466 0.77117 0.88948 0.88759 0.89351 0.76363 0.88965 0.90576 0.93560 0.92956 0.78029 0.83236 0.89486 0.93859 0.77481 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.24 36.01 0.37 -0.38 16 2 C 0.06 0.78 7.15 -82.52 -0.59 0.19 16 3 N -0.49 -6.55 11.20 -10.64 -0.12 -6.66 16 4 C 0.20 2.18 12.52 -90.57 -1.13 1.05 16 5 N -0.43 -4.83 3.17 -121.97 -0.39 -5.22 16 6 C 0.06 0.55 11.07 59.85 0.66 1.21 16 7 C -0.08 -1.10 6.66 -82.15 -0.55 -1.65 16 8 C 0.60 8.08 6.73 -12.82 -0.09 7.99 16 9 O -0.52 -8.56 17.12 5.21 0.09 -8.47 16 10 N -0.72 -8.27 4.99 -61.59 -0.31 -8.58 16 11 C 0.12 1.38 5.20 -4.04 -0.02 1.35 16 12 C 0.08 0.84 2.60 -67.71 -0.18 0.66 16 13 H 0.06 0.59 7.80 -51.93 -0.40 0.19 16 14 C 0.09 0.93 6.80 37.16 0.25 1.18 16 15 O -0.55 -6.41 12.64 -35.23 -0.45 -6.86 16 16 N -0.65 -9.72 5.87 -107.99 -0.63 -10.35 16 17 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 18 C 0.44 9.88 7.82 -10.99 -0.09 9.79 16 19 O -0.58 -15.14 15.78 5.54 0.09 -15.05 16 20 N -0.56 -13.68 5.29 -10.97 -0.06 -13.74 16 21 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 25 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.65 7.94 -51.93 -0.41 0.23 16 32 H 0.21 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.84 7.80 -51.93 -0.40 0.44 16 36 H 0.40 4.38 7.35 -40.82 -0.30 4.08 16 37 H 0.09 1.25 7.40 -51.93 -0.38 0.87 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.54 7.35 -51.93 -0.38 0.16 16 41 H 0.37 2.67 9.12 45.56 0.42 3.09 16 42 H 0.35 5.35 6.41 -39.29 -0.25 5.10 16 43 H 0.09 1.30 7.36 -51.93 -0.38 0.92 16 44 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 45 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 46 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -36.24 394.76 -7.47 -43.71 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -5.72 Total: 18.55 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: -1.63 Total: 14.36 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -0.78 Total: -67.73 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.27 Total: -30.37 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.24 -7.47 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283771964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.853 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds