Wall clock time and date at job start Tue Mar 31 2020 23:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33321 * 126.10664 * 2 1 4 4 C 1.30857 * 109.68594 * 180.27178 * 3 2 1 5 5 N 1.34497 * 109.16203 * 359.76824 * 4 3 2 6 6 C 1.46502 * 126.47072 * 180.02562 * 5 4 3 7 7 C 1.36658 * 126.10830 * 179.87498 * 2 1 3 8 8 C 1.46761 * 126.84360 * 0.02562 * 7 2 1 9 9 O 1.21676 * 120.00561 * 279.11554 * 8 7 2 10 10 N 1.34778 * 119.99866 * 99.12029 * 8 7 2 11 11 C 1.46504 * 120.00179 * 174.85578 * 10 8 7 12 12 C 1.52998 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47195 * 294.99567 * 12 11 10 14 14 C 1.53002 * 109.46812 * 174.99645 * 12 11 10 15 15 O 1.42894 * 109.47295 * 304.99887 * 14 12 11 16 16 N 1.46898 * 109.47415 * 55.00015 * 12 11 10 17 17 C 1.46904 * 111.00114 * 204.99866 * 16 12 11 18 18 C 1.50694 * 109.47225 * 179.97438 * 17 16 12 19 19 O 1.21298 * 120.00209 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00057 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00253 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99895 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00067 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00005 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47057 * 90.00058 * 25 23 21 27 27 H 1.48499 * 109.47424 * 210.00190 * 25 23 21 28 28 H 1.48503 * 109.47118 * 330.00342 * 25 23 21 29 29 H 1.08998 * 109.47006 * 270.12422 * 1 2 3 30 30 H 1.08996 * 109.46963 * 30.12561 * 1 2 3 31 31 H 1.08998 * 109.47050 * 150.12493 * 1 2 3 32 32 H 1.08003 * 125.42002 * 179.78341 * 4 3 2 33 33 H 1.09001 * 109.46794 * 274.89151 * 6 5 4 34 34 H 1.09000 * 109.47326 * 34.89301 * 6 5 4 35 35 H 1.09003 * 109.47194 * 154.90058 * 6 5 4 36 36 H 0.96998 * 120.00164 * 355.12361 * 10 8 7 37 37 H 1.09004 * 109.46931 * 299.99727 * 11 10 8 38 38 H 1.08994 * 109.47416 * 59.99406 * 11 10 8 39 39 H 1.09004 * 109.47244 * 65.00163 * 14 12 11 40 40 H 1.09003 * 109.46888 * 184.99772 * 14 12 11 41 41 H 0.96708 * 113.99769 * 180.02562 * 15 14 12 42 42 H 1.00904 * 110.99562 * 328.94983 * 16 12 11 43 43 H 1.08999 * 109.46689 * 299.99844 * 17 16 12 44 44 H 1.09000 * 109.46835 * 59.99759 * 17 16 12 45 45 H 0.97002 * 120.00285 * 0.02562 * 20 18 17 46 46 H 0.96998 * 120.00023 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7072 -0.0058 5 7 3.6122 -0.6362 -0.0047 6 6 4.8306 -1.4497 -0.0094 7 6 2.3124 -1.1041 0.0024 8 6 1.8821 -2.5072 0.0049 9 8 1.5437 -3.0380 1.0462 10 7 1.8618 -3.2079 -1.1462 11 6 1.5414 -4.6373 -1.1281 12 6 1.5864 -5.1881 -2.5548 13 1 0.7990 -4.7237 -3.1486 14 6 1.3750 -6.7032 -2.5234 15 8 2.3369 -7.3003 -1.6516 16 7 2.8934 -4.8884 -3.1545 17 6 2.8023 -4.8426 -4.6200 18 6 4.1589 -4.5329 -5.1983 19 8 5.1086 -4.3671 -4.4621 20 7 4.3173 -4.4411 -6.5335 21 6 5.5517 -4.1598 -7.0597 22 1 6.3972 -4.0122 -6.4042 23 6 5.7148 -4.0647 -8.4363 24 7 4.6859 -4.2438 -9.2339 25 14 7.3968 -3.6821 -9.1532 26 1 8.1281 -4.9501 -9.4040 27 1 7.2340 -2.9435 -10.4312 28 1 8.1657 -2.8486 -8.1943 29 1 -0.3633 0.0022 1.0276 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3633 -0.8911 -0.5119 32 1 4.3971 1.3745 -0.0106 33 1 5.1767 -1.5796 -1.0348 34 1 5.6035 -0.9498 0.5745 35 1 4.6180 -2.4250 0.4286 36 1 2.0632 -2.7666 -1.9862 37 1 2.2690 -5.1650 -0.5115 38 1 0.5431 -4.7807 -0.7150 39 1 0.3706 -6.9225 -2.1612 40 1 1.4951 -7.1076 -3.5285 41 1 2.2622 -8.2621 -1.5833 42 1 3.2701 -4.0268 -2.7885 43 1 2.4596 -5.8078 -4.9930 44 1 2.0958 -4.0671 -4.9160 45 1 3.5580 -4.5741 -7.1224 46 1 4.7998 -4.1770 -10.1949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283771964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:46 Heat of formation + Delta-G solvation = -82.443436 kcal Electronic energy + Delta-G solvation = -29699.777509 eV Core-core repulsion = 25431.585459 eV Total energy + Delta-G solvation = -4268.192050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.26408 -40.80073 -40.12763 -38.73213 -36.61002 -35.97393 -35.49344 -34.96422 -33.26843 -32.52124 -31.28033 -29.44246 -27.94682 -27.36152 -26.61108 -25.70158 -23.71852 -21.79318 -21.62136 -21.19439 -20.90500 -19.92983 -18.96712 -18.41073 -17.97024 -17.53460 -17.16221 -16.68262 -16.64573 -16.56665 -16.39904 -16.00342 -15.62631 -15.41096 -15.09024 -14.98554 -14.65530 -14.51098 -14.48603 -14.06953 -13.98039 -13.62110 -13.55922 -13.42629 -13.27578 -13.14640 -13.09406 -12.92488 -12.71502 -12.41749 -12.12990 -12.05541 -11.68018 -11.50874 -11.03025 -10.76954 -10.66934 -10.35505 -10.32060 -10.01436 -9.50119 -9.36363 -8.47145 -5.95470 0.58242 1.04690 1.37446 1.41933 1.53770 1.72640 1.91728 2.04875 2.13956 2.28144 2.81424 3.20613 3.41835 3.42526 3.47873 3.60680 3.75273 3.78841 4.06817 4.11540 4.23034 4.27455 4.27866 4.36523 4.43524 4.52690 4.57873 4.59423 4.69265 4.72130 4.77299 4.80145 4.92780 4.95272 5.10227 5.15157 5.40823 5.50300 5.85001 6.05932 6.06922 6.15702 6.27077 6.59767 6.84838 6.89728 7.06842 7.12638 7.56306 8.11378 8.70077 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.003011 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.933007 B = 9297.254158 C =11151.482831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.046 3.954 3 N -0.525 5.525 4 C 0.212 3.788 5 N -0.437 5.437 6 C 0.063 3.937 7 C -0.109 4.109 8 C 0.608 3.392 9 O -0.557 6.557 10 N -0.708 5.708 11 C 0.128 3.872 12 C 0.077 3.923 13 H 0.088 0.912 14 C 0.089 3.911 15 O -0.582 6.582 16 N -0.669 5.669 17 C 0.062 3.938 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.405 0.595 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.390 0.610 42 H 0.340 0.660 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 2.211 13.859 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 N -0.244 5.244 4 C -0.070 4.070 5 N -0.119 5.119 6 C -0.078 4.078 7 C -0.225 4.225 8 C 0.392 3.608 9 O -0.435 6.435 10 N -0.360 5.360 11 C 0.005 3.995 12 C -0.032 4.032 13 H 0.106 0.894 14 C 0.010 3.990 15 O -0.389 6.389 16 N -0.304 5.304 17 C -0.070 4.070 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.267 0.733 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.241 0.759 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.239 0.761 42 H 0.160 0.840 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.809 2.560 14.963 17.551 hybrid contribution 0.453 -0.346 -1.447 1.555 sum -8.355 2.215 13.516 16.044 Atomic orbital electron populations 1.20173 0.85970 1.03518 1.03189 1.21267 0.97482 0.86906 1.03046 1.70031 1.01563 1.30472 1.22308 1.25838 0.97662 0.81897 1.01617 1.45510 1.05896 1.08239 1.52257 1.22404 0.84157 0.95860 1.05355 1.20672 0.86129 0.94570 1.21163 1.16867 0.77070 0.83388 0.83427 1.90821 1.49153 1.70596 1.32884 1.46038 1.69991 1.10803 1.09167 1.21498 1.02367 0.78438 0.97165 1.22054 0.90832 0.96597 0.93736 0.89404 1.22188 0.91887 0.91033 0.93907 1.86548 1.58152 1.26433 1.67739 1.60039 1.24688 1.42080 1.03586 1.21658 0.93129 1.03203 0.89025 1.20837 0.91697 0.82592 0.82362 1.90496 1.43766 1.56655 1.59880 1.41916 1.10802 1.62506 1.05691 1.19640 0.88403 1.46956 0.91201 0.90349 1.25991 1.02628 0.96687 0.95816 1.69663 1.31684 1.49749 1.04940 0.84973 0.77483 0.78518 0.77661 1.19809 1.19630 1.19694 0.90472 0.89692 0.90860 0.73321 0.89220 0.85537 0.90664 0.75851 0.91317 0.89225 0.90428 0.92997 0.76080 0.83967 0.87636 0.91008 0.76977 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.24 71.24 0.73 -0.72 16 2 C 0.05 1.20 7.15 41.96 0.30 1.50 16 3 N -0.52 -13.51 11.20 -187.59 -2.10 -15.61 16 4 C 0.21 4.23 12.52 180.33 2.26 6.49 16 5 N -0.44 -9.39 3.17 -539.81 -1.71 -11.10 16 6 C 0.06 1.05 11.07 127.77 1.41 2.46 16 7 C -0.11 -2.81 6.66 40.01 0.27 -2.54 16 8 C 0.61 16.33 6.73 86.47 0.58 16.91 16 9 O -0.56 -18.54 17.12 -4.27 -0.07 -18.61 16 10 N -0.71 -15.84 4.99 -467.00 -2.33 -18.17 16 11 C 0.13 2.77 5.20 86.38 0.45 3.22 16 12 C 0.08 1.55 2.60 44.92 0.12 1.67 16 13 H 0.09 1.36 7.80 -2.38 -0.02 1.34 16 14 C 0.09 1.57 6.80 71.98 0.49 2.06 16 15 O -0.58 -12.67 12.64 -148.98 -1.88 -14.55 16 16 N -0.67 -19.03 5.87 -495.58 -2.91 -21.94 16 17 C 0.06 1.89 5.96 85.55 0.51 2.40 16 18 C 0.44 19.61 7.82 87.66 0.69 20.29 16 19 O -0.62 -32.82 15.78 -3.08 -0.05 -32.87 16 20 N -0.57 -27.98 5.29 -306.99 -1.62 -29.61 16 21 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 24 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 25 Si 0.99 41.83 29.55 68.60 2.03 43.86 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.36 7.94 -2.39 -0.02 1.35 16 32 H 0.25 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.45 7.80 -2.39 -0.02 1.43 16 36 H 0.41 8.52 7.35 -92.71 -0.68 7.83 16 37 H 0.07 1.85 7.40 -2.38 -0.02 1.84 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.05 0.93 7.35 -2.39 -0.02 0.91 16 41 H 0.39 5.06 9.12 -74.05 -0.68 4.38 16 42 H 0.34 10.30 6.41 -89.69 -0.57 9.72 16 43 H 0.11 2.89 7.36 -2.39 -0.02 2.87 16 44 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 45 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 46 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -79.56 394.76 -2.89 -82.45 By element: Atomic # 1 Polarization: 49.56 SS G_CDS: -1.60 Total: 47.96 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 9.08 Total: 36.15 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -10.39 Total: -144.39 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -2.00 Total: -66.03 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -79.56 -2.89 -82.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283771964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.006 kcal (2) G-P(sol) polarization free energy of solvation -79.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds