Wall clock time and date at job start Tue Mar 31 2020 22:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30449 * 125.98979 * 2 1 4 4 N 1.39934 * 108.89823 * 180.26489 * 3 2 1 5 5 H 0.96993 * 125.75342 * 179.73712 * 4 3 2 6 6 C 1.34262 * 108.48930 * 359.73278 * 4 3 2 7 7 C 1.38037 * 107.41920 * 0.02562 * 6 4 3 8 8 C 1.47426 * 126.41612 * 179.97438 * 7 6 4 9 9 O 1.21602 * 120.00390 * 215.27324 * 8 7 6 10 10 N 1.34776 * 119.99867 * 35.27764 * 8 7 6 11 11 C 1.46499 * 120.00167 * 355.77648 * 10 8 7 12 12 C 1.46505 * 120.00319 * 175.77748 * 10 8 7 13 13 C 1.52996 * 109.46900 * 89.99625 * 12 10 8 14 14 H 1.09002 * 109.47036 * 60.00835 * 13 12 10 15 15 O 1.42900 * 109.47705 * 300.00216 * 13 12 10 16 16 C 1.53005 * 109.47270 * 180.02562 * 13 12 10 17 17 N 1.46894 * 109.47301 * 185.00216 * 16 13 12 18 18 C 1.46900 * 110.99678 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.46805 * 179.97438 * 18 17 16 20 20 O 1.21287 * 120.00079 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99584 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99858 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99809 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00007 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99885 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00234 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47511 * 89.99367 * 26 24 22 28 28 H 1.48501 * 109.47120 * 209.99581 * 26 24 22 29 29 H 1.48502 * 109.46968 * 329.99469 * 26 24 22 30 30 H 1.09008 * 109.47100 * 270.17176 * 1 2 3 31 31 H 1.08995 * 109.47573 * 30.17097 * 1 2 3 32 32 H 1.09004 * 109.47351 * 150.17473 * 1 2 3 33 33 H 1.08000 * 126.28524 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.47755 * 275.41165 * 11 10 8 35 35 H 1.09008 * 109.46811 * 35.40491 * 11 10 8 36 36 H 1.08996 * 109.47598 * 155.40216 * 11 10 8 37 37 H 1.09002 * 109.46595 * 330.00190 * 12 10 8 38 38 H 1.08998 * 109.47310 * 210.00158 * 12 10 8 39 39 H 0.96702 * 113.99812 * 300.00823 * 15 13 12 40 40 H 1.08997 * 109.46696 * 64.99878 * 16 13 12 41 41 H 1.09007 * 109.46922 * 305.00599 * 16 13 12 42 42 H 1.00898 * 111.00162 * 56.04972 * 17 16 13 43 43 H 1.09007 * 109.47334 * 299.99820 * 18 17 16 44 44 H 1.08997 * 109.47535 * 59.99974 * 18 17 16 45 45 H 0.96998 * 120.00868 * 0.02562 * 21 19 18 46 46 H 0.96995 * 120.00532 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0061 5 1 4.3841 1.2301 -0.0110 6 6 3.6439 -0.6980 -0.0040 7 6 2.3373 -1.1432 0.0029 8 6 1.8915 -2.5485 0.0069 9 8 0.8853 -2.8690 -0.5960 10 7 2.5993 -3.4780 0.6788 11 6 3.8604 -3.1108 1.3278 12 6 2.1076 -4.8557 0.7603 13 6 2.6535 -5.6625 -0.4195 14 1 3.7430 -5.6631 -0.3862 15 8 2.2146 -5.0718 -1.6444 16 6 2.1395 -7.1012 -0.3348 17 7 2.7575 -7.9053 -1.3975 18 6 2.2859 -9.2956 -1.3473 19 6 2.9395 -10.0879 -2.4502 20 8 3.7216 -9.5476 -3.2034 21 7 2.6557 -11.3970 -2.5987 22 6 3.2499 -12.1177 -3.6024 23 1 3.9458 -11.6364 -4.2736 24 6 2.9578 -13.4674 -3.7552 25 7 3.5277 -14.1583 -4.7169 26 14 1.7548 -14.3001 -2.5938 27 1 0.3803 -14.1948 -3.1457 28 1 2.1203 -15.7318 -2.4455 29 1 1.8076 -13.6357 -1.2667 30 1 -0.3634 0.0031 1.0277 31 1 -0.3634 0.8884 -0.5164 32 1 -0.3634 -0.8916 -0.5111 33 1 4.5297 -1.3157 -0.0078 34 1 4.6711 -3.1607 0.6009 35 1 3.7855 -2.0963 1.7194 36 1 4.0628 -3.8020 2.1459 37 1 1.0181 -4.8551 0.7270 38 1 2.4424 -5.3063 1.6946 39 1 1.2531 -5.0378 -1.7423 40 1 1.0565 -7.1078 -0.4573 41 1 2.3978 -7.5227 0.6367 42 1 3.7642 -7.8625 -1.3442 43 1 2.5449 -9.7327 -0.3829 44 1 1.2039 -9.3172 -1.4771 45 1 2.0305 -11.8293 -1.9961 46 1 3.3236 -15.1004 -4.8239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284438144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:06 Heat of formation + Delta-G solvation = -30.203200 kcal Electronic energy + Delta-G solvation = -28792.686739 eV Core-core repulsion = 24526.759995 eV Total energy + Delta-G solvation = -4265.926744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87765 -39.80053 -38.50540 -37.51339 -35.64410 -34.73817 -33.80253 -33.35841 -31.65617 -31.48595 -29.98377 -28.36847 -27.83188 -26.83641 -25.06098 -23.46049 -22.58342 -21.77114 -20.73587 -19.79452 -19.35368 -18.33880 -18.14169 -17.11286 -16.92532 -16.26132 -15.95995 -15.81077 -15.31121 -15.18572 -14.87790 -14.85283 -14.67275 -14.22552 -13.88746 -13.61704 -13.52386 -13.27582 -13.17722 -13.13106 -12.94175 -12.67202 -12.61055 -12.37140 -12.07735 -12.01132 -11.83888 -11.62051 -11.30190 -11.15063 -11.11619 -10.58188 -10.25522 -10.02013 -9.94931 -9.90878 -9.54908 -9.16803 -8.83322 -8.53212 -8.16469 -8.08166 -6.28758 -3.80107 1.14993 1.81569 2.24802 2.71590 2.97181 3.03433 3.08529 3.16214 3.77018 4.01067 4.09873 4.12419 4.19153 4.40243 4.63339 4.63840 4.75535 4.77084 4.84069 4.95021 5.03350 5.07837 5.12597 5.17620 5.20591 5.25738 5.33181 5.38666 5.48914 5.52095 5.63580 5.64804 5.81902 5.95220 5.96963 6.09736 6.15919 6.64956 7.03546 7.10140 7.17353 7.57747 7.61121 7.87669 8.03485 8.17246 8.62536 8.97653 9.44965 9.85857 10.84478 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.001727 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.288683 B =16207.252065 C =16353.167301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.131 3.869 3 N -0.300 5.300 4 N -0.464 5.464 5 H 0.444 0.556 6 C 0.100 3.900 7 C -0.282 4.282 8 C 0.602 3.398 9 O -0.529 6.529 10 N -0.608 5.608 11 C 0.072 3.928 12 C 0.086 3.914 13 C 0.098 3.902 14 H 0.094 0.906 15 O -0.537 6.537 16 C 0.029 3.971 17 N -0.658 5.658 18 C 0.048 3.952 19 C 0.450 3.550 20 O -0.562 6.562 21 N -0.592 5.592 22 C -0.304 4.304 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.882 5.882 26 Si 0.881 3.119 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.189 0.811 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.377 0.623 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.350 0.650 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 26.926 19.736 33.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 N -0.123 5.123 4 N -0.168 5.168 5 H 0.289 0.711 6 C -0.052 4.052 7 C -0.297 4.297 8 C 0.391 3.609 9 O -0.406 6.406 10 N -0.341 5.341 11 C -0.071 4.071 12 C -0.038 4.038 13 C 0.036 3.964 14 H 0.112 0.888 15 O -0.342 6.342 16 C -0.102 4.102 17 N -0.291 5.291 18 C -0.085 4.085 19 C 0.236 3.764 20 O -0.444 6.444 21 N -0.232 5.232 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.205 0.795 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.170 0.830 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.038 28.425 18.207 33.818 hybrid contribution -0.272 -1.986 1.839 2.720 sum -2.310 26.439 20.046 33.260 Atomic orbital electron populations 1.20381 0.85757 1.04735 1.03348 1.22449 0.97316 0.88637 0.95300 1.77165 0.86311 1.22445 1.26359 1.46113 1.07810 1.05494 1.57393 0.71146 1.23413 0.99180 0.85496 0.97112 1.20209 0.92302 0.94551 1.22623 1.17157 0.82756 0.83317 0.77702 1.90716 1.26255 1.81125 1.42460 1.47463 1.23447 1.09191 1.53973 1.22048 0.85565 1.01920 0.97601 1.22245 1.01143 0.81213 0.99172 1.22221 0.99508 0.89880 0.84791 0.88807 1.86600 1.27809 1.82412 1.37385 1.22647 1.00500 0.94007 0.93013 1.59917 1.13108 1.08991 1.47039 1.21722 1.00749 0.88957 0.97028 1.19715 0.86355 0.82457 0.87892 1.90575 1.37749 1.69480 1.46553 1.42207 1.41761 1.08741 1.30445 1.19441 1.24005 0.91920 1.07949 0.86293 1.25039 0.97895 0.96169 0.97123 1.69621 1.42648 1.08961 1.30994 0.86658 0.81831 0.80042 0.80752 1.19593 1.20230 1.19582 0.90376 0.90575 0.88461 0.79460 0.92436 0.90894 0.90694 0.89290 0.89728 0.77511 0.90567 0.94877 0.83025 0.93942 0.89512 0.79725 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.25 36.00 0.37 -0.32 16 2 C 0.13 1.29 7.26 -82.02 -0.60 0.69 16 3 N -0.30 -2.84 12.63 33.90 0.43 -2.41 16 4 N -0.46 -2.79 7.29 30.85 0.22 -2.57 16 5 H 0.44 1.07 8.96 -182.73 -1.64 -0.57 16 6 C 0.10 0.61 9.72 -16.56 -0.16 0.45 16 7 C -0.28 -2.62 5.44 -105.07 -0.57 -3.19 16 8 C 0.60 6.39 7.07 -12.52 -0.09 6.30 16 9 O -0.53 -7.10 13.66 -7.81 -0.11 -7.20 16 10 N -0.61 -4.88 2.83 -182.85 -0.52 -5.40 16 11 C 0.07 0.32 9.03 59.85 0.54 0.86 16 12 C 0.09 0.67 5.18 -4.04 -0.02 0.65 16 13 C 0.10 1.00 3.42 -26.73 -0.09 0.91 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 15 O -0.54 -7.42 12.00 -48.32 -0.58 -8.00 16 16 C 0.03 0.32 5.32 -3.82 -0.02 0.30 16 17 N -0.66 -10.33 6.07 -115.05 -0.70 -11.03 16 18 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 19 C 0.45 10.42 7.82 -10.98 -0.09 10.33 16 20 O -0.56 -15.51 15.78 5.55 0.09 -15.42 16 21 N -0.59 -14.29 5.09 -10.96 -0.06 -14.35 16 22 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 23 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -26.01 13.96 55.50 0.77 -25.24 16 26 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 30 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.92 6.64 -51.93 -0.34 0.57 16 33 H 0.19 0.52 6.09 -52.49 -0.32 0.20 16 34 H 0.06 0.21 7.28 -51.93 -0.38 -0.17 16 35 H 0.07 0.27 5.84 -51.92 -0.30 -0.04 16 36 H 0.07 0.23 7.83 -51.93 -0.41 -0.18 16 37 H 0.09 0.76 7.48 -51.93 -0.39 0.37 16 38 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 39 H 0.38 4.85 8.33 45.56 0.38 5.23 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -39.02 383.30 -7.27 -46.30 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -6.89 Total: 14.86 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -1.00 Total: 9.90 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.16 Total: -61.00 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.60 Total: -30.62 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.02 -7.27 -46.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284438144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.093 kcal (2) G-P(sol) polarization free energy of solvation -39.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds