Wall clock time and date at job start Tue Mar 31 2020 22:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30449 * 125.98979 * 2 1 4 4 N 1.39934 * 108.89823 * 180.26489 * 3 2 1 5 5 H 0.96993 * 125.75342 * 179.73712 * 4 3 2 6 6 C 1.34262 * 108.48930 * 359.73278 * 4 3 2 7 7 C 1.38037 * 107.41920 * 0.02562 * 6 4 3 8 8 C 1.47426 * 126.41612 * 179.97438 * 7 6 4 9 9 O 1.21602 * 120.00390 * 215.27324 * 8 7 6 10 10 N 1.34776 * 119.99867 * 35.27764 * 8 7 6 11 11 C 1.46499 * 120.00167 * 355.77648 * 10 8 7 12 12 C 1.46505 * 120.00319 * 175.77748 * 10 8 7 13 13 C 1.52996 * 109.46900 * 89.99625 * 12 10 8 14 14 H 1.09002 * 109.47036 * 60.00835 * 13 12 10 15 15 O 1.42900 * 109.47705 * 300.00216 * 13 12 10 16 16 C 1.53005 * 109.47270 * 180.02562 * 13 12 10 17 17 N 1.46894 * 109.47301 * 185.00216 * 16 13 12 18 18 C 1.46900 * 110.99678 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.46805 * 179.97438 * 18 17 16 20 20 O 1.21287 * 120.00079 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99584 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99858 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99809 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00007 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99885 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00234 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47511 * 89.99367 * 26 24 22 28 28 H 1.48501 * 109.47120 * 209.99581 * 26 24 22 29 29 H 1.48502 * 109.46968 * 329.99469 * 26 24 22 30 30 H 1.09008 * 109.47100 * 270.17176 * 1 2 3 31 31 H 1.08995 * 109.47573 * 30.17097 * 1 2 3 32 32 H 1.09004 * 109.47351 * 150.17473 * 1 2 3 33 33 H 1.08000 * 126.28524 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.47755 * 275.41165 * 11 10 8 35 35 H 1.09008 * 109.46811 * 35.40491 * 11 10 8 36 36 H 1.08996 * 109.47598 * 155.40216 * 11 10 8 37 37 H 1.09002 * 109.46595 * 330.00190 * 12 10 8 38 38 H 1.08998 * 109.47310 * 210.00158 * 12 10 8 39 39 H 0.96702 * 113.99812 * 300.00823 * 15 13 12 40 40 H 1.08997 * 109.46696 * 64.99878 * 16 13 12 41 41 H 1.09007 * 109.46922 * 305.00599 * 16 13 12 42 42 H 1.00898 * 111.00162 * 56.04972 * 17 16 13 43 43 H 1.09007 * 109.47334 * 299.99820 * 18 17 16 44 44 H 1.08997 * 109.47535 * 59.99974 * 18 17 16 45 45 H 0.96998 * 120.00868 * 0.02562 * 21 19 18 46 46 H 0.96995 * 120.00532 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0061 5 1 4.3841 1.2301 -0.0110 6 6 3.6439 -0.6980 -0.0040 7 6 2.3373 -1.1432 0.0029 8 6 1.8915 -2.5485 0.0069 9 8 0.8853 -2.8690 -0.5960 10 7 2.5993 -3.4780 0.6788 11 6 3.8604 -3.1108 1.3278 12 6 2.1076 -4.8557 0.7603 13 6 2.6535 -5.6625 -0.4195 14 1 3.7430 -5.6631 -0.3862 15 8 2.2146 -5.0718 -1.6444 16 6 2.1395 -7.1012 -0.3348 17 7 2.7575 -7.9053 -1.3975 18 6 2.2859 -9.2956 -1.3473 19 6 2.9395 -10.0879 -2.4502 20 8 3.7216 -9.5476 -3.2034 21 7 2.6557 -11.3970 -2.5987 22 6 3.2499 -12.1177 -3.6024 23 1 3.9458 -11.6364 -4.2736 24 6 2.9578 -13.4674 -3.7552 25 7 3.5277 -14.1583 -4.7169 26 14 1.7548 -14.3001 -2.5938 27 1 0.3803 -14.1948 -3.1457 28 1 2.1203 -15.7318 -2.4455 29 1 1.8076 -13.6357 -1.2667 30 1 -0.3634 0.0031 1.0277 31 1 -0.3634 0.8884 -0.5164 32 1 -0.3634 -0.8916 -0.5111 33 1 4.5297 -1.3157 -0.0078 34 1 4.6711 -3.1607 0.6009 35 1 3.7855 -2.0963 1.7194 36 1 4.0628 -3.8020 2.1459 37 1 1.0181 -4.8551 0.7270 38 1 2.4424 -5.3063 1.6946 39 1 1.2531 -5.0378 -1.7423 40 1 1.0565 -7.1078 -0.4573 41 1 2.3978 -7.5227 0.6367 42 1 3.7642 -7.8625 -1.3442 43 1 2.5449 -9.7327 -0.3829 44 1 1.2039 -9.3172 -1.4771 45 1 2.0305 -11.8293 -1.9961 46 1 3.3236 -15.1004 -4.8239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284438144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:06 Heat of formation + Delta-G solvation = -65.742116 kcal Electronic energy + Delta-G solvation = -28794.227822 eV Core-core repulsion = 24526.759995 eV Total energy + Delta-G solvation = -4267.467827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46103 -40.53354 -40.24391 -38.49172 -36.45803 -36.09579 -35.55635 -33.95484 -33.74317 -32.21398 -30.82987 -29.04478 -28.77255 -27.63298 -26.45114 -24.76066 -23.30535 -22.56647 -21.40337 -21.24741 -20.39414 -20.25812 -18.70312 -18.15517 -17.68388 -17.39705 -17.01877 -16.81124 -16.71567 -16.11728 -15.99935 -15.83311 -15.43549 -15.29702 -15.03430 -14.88303 -14.59863 -14.40598 -14.23575 -14.08967 -13.78498 -13.67542 -13.57058 -13.23834 -13.17999 -12.99395 -12.90406 -12.74031 -12.48303 -12.40605 -11.96973 -11.96359 -11.90065 -11.51223 -11.11271 -10.79558 -10.50571 -10.42029 -10.24561 -9.78637 -9.44471 -9.22690 -8.40870 -6.02130 0.61965 1.13046 1.30508 1.36999 1.45527 1.78673 1.96419 2.15620 2.23889 2.28342 2.75876 3.15317 3.37230 3.51537 3.72817 3.74538 3.90413 4.05320 4.16163 4.22492 4.24411 4.29190 4.38466 4.45036 4.52253 4.54577 4.56409 4.69551 4.73412 4.75619 4.78486 4.88690 4.94463 4.98582 5.18776 5.46344 5.52721 5.60558 5.91323 6.07835 6.26765 6.40608 6.43484 6.58133 6.60488 6.88544 6.96564 7.34021 7.40184 7.97564 8.76929 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.001727 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.288683 B =16207.252065 C =16353.167301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.113 3.887 3 N -0.327 5.327 4 N -0.450 5.450 5 H 0.460 0.540 6 C 0.125 3.875 7 C -0.314 4.314 8 C 0.594 3.406 9 O -0.570 6.570 10 N -0.606 5.606 11 C 0.063 3.937 12 C 0.092 3.908 13 C 0.098 3.902 14 H 0.093 0.907 15 O -0.565 6.565 16 C 0.033 3.967 17 N -0.685 5.685 18 C 0.064 3.936 19 C 0.446 3.554 20 O -0.616 6.616 21 N -0.591 5.591 22 C -0.331 4.331 23 H 0.053 0.947 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.968 3.032 27 H -0.258 1.258 28 H -0.274 1.274 29 H -0.229 1.229 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.224 0.776 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.376 0.624 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.343 0.657 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 26.920 23.691 35.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 N -0.150 5.150 4 N -0.156 5.156 5 H 0.308 0.692 6 C -0.029 4.029 7 C -0.329 4.329 8 C 0.384 3.616 9 O -0.450 6.450 10 N -0.337 5.337 11 C -0.079 4.079 12 C -0.032 4.032 13 C 0.037 3.963 14 H 0.111 0.889 15 O -0.371 6.371 16 C -0.096 4.096 17 N -0.317 5.317 18 C -0.068 4.068 19 C 0.234 3.766 20 O -0.500 6.500 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.071 0.929 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.787 3.213 27 H -0.183 1.183 28 H -0.200 1.200 29 H -0.152 1.152 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.240 0.760 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.224 0.776 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.161 0.839 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.226 0.774 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.680 28.464 22.215 36.206 hybrid contribution 0.099 -1.885 0.534 1.961 sum -2.581 26.579 22.749 35.081 Atomic orbital electron populations 1.20338 0.85586 1.04078 1.03900 1.22686 0.97953 0.89164 0.95654 1.77093 0.87728 1.22836 1.27390 1.46151 1.07410 1.05951 1.56134 0.69213 1.23858 0.99156 0.85505 0.94364 1.20292 0.93630 0.93962 1.24999 1.17448 0.82533 0.84175 0.77476 1.90685 1.28100 1.81837 1.44368 1.47559 1.24217 1.08782 1.53169 1.22318 0.84089 1.03118 0.98362 1.22201 1.00617 0.81001 0.99356 1.22343 0.99429 0.89890 0.84593 0.88914 1.86565 1.27890 1.83018 1.39581 1.22700 1.00409 0.93466 0.93018 1.59902 1.12914 1.08891 1.50036 1.21633 1.01120 0.88693 0.95399 1.21082 0.84968 0.82181 0.88339 1.90551 1.40025 1.70549 1.48923 1.42026 1.42159 1.09145 1.29918 1.19013 1.24662 0.93041 1.09264 0.92894 1.26157 0.99967 0.96225 0.99160 1.69809 1.44636 1.09707 1.33416 0.85328 0.78205 0.78394 0.79343 1.18289 1.19950 1.15203 0.89245 0.90034 0.90157 0.75965 0.91333 0.89992 0.88562 0.90267 0.86291 0.77559 0.89988 0.91611 0.83869 0.90123 0.87090 0.77405 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.25 71.24 0.73 -0.65 16 2 C 0.11 2.22 7.26 43.51 0.32 2.53 16 3 N -0.33 -5.99 12.63 -46.68 -0.59 -6.58 16 4 N -0.45 -4.61 7.29 -56.32 -0.41 -5.02 16 5 H 0.46 1.20 8.96 -213.44 -1.91 -0.71 16 6 C 0.12 1.25 9.72 84.27 0.82 2.07 16 7 C -0.31 -5.60 5.44 -20.15 -0.11 -5.71 16 8 C 0.59 12.34 7.07 86.66 0.61 12.95 16 9 O -0.57 -15.78 13.66 8.48 0.12 -15.67 16 10 N -0.61 -8.52 2.83 -850.67 -2.41 -10.92 16 11 C 0.06 0.35 9.03 127.77 1.15 1.51 16 12 C 0.09 1.20 5.18 86.38 0.45 1.65 16 13 C 0.10 1.83 3.42 30.59 0.10 1.93 16 14 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 15 O -0.56 -15.52 12.00 -136.46 -1.64 -17.16 16 16 C 0.03 0.63 5.32 86.31 0.46 1.09 16 17 N -0.68 -20.19 6.07 -517.92 -3.15 -23.34 16 18 C 0.06 1.93 6.17 85.56 0.53 2.46 16 19 C 0.45 20.52 7.82 87.66 0.69 21.21 16 20 O -0.62 -35.25 15.78 -3.05 -0.05 -35.30 16 21 N -0.59 -28.17 5.09 -306.98 -1.56 -29.73 16 22 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 23 H 0.05 3.77 7.39 -2.91 -0.02 3.74 16 24 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 25 N -0.94 -56.95 13.96 21.66 0.30 -56.65 16 26 Si 0.97 38.85 27.74 68.60 1.90 40.75 16 27 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.23 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.65 6.64 -2.38 -0.02 1.63 16 33 H 0.22 0.45 6.09 -2.91 -0.02 0.43 16 34 H 0.07 0.26 7.28 -2.39 -0.02 0.24 16 35 H 0.08 0.33 5.84 -2.38 -0.01 0.32 16 36 H 0.10 0.17 7.83 -2.39 -0.02 0.15 16 37 H 0.08 1.23 7.48 -2.39 -0.02 1.22 16 38 H 0.12 0.74 7.86 -2.39 -0.02 0.72 16 39 H 0.38 9.95 8.33 -74.06 -0.62 9.33 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.34 10.84 8.43 -89.70 -0.76 10.08 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 45 H 0.39 15.23 5.76 -92.71 -0.53 14.70 16 46 H 0.28 15.50 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -93.27 383.30 -3.22 -96.49 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -2.81 Total: 41.39 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.07 Total: 21.73 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -7.81 Total: -132.24 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -1.57 Total: -68.13 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.75 kcal Total: -93.27 -3.22 -96.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284438144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.744 kcal (2) G-P(sol) polarization free energy of solvation -93.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds