Wall clock time and date at job start Tue Mar 31 2020 22:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38941 * 119.69391 * 2 1 4 4 C 1.37667 * 120.64882 * 179.97438 * 3 2 1 5 5 C 1.39222 * 119.80968 * 0.03809 * 4 3 2 6 6 N 1.37484 * 133.18009 * 180.02562 * 5 4 3 7 7 H 0.97004 * 125.60406 * 359.93146 * 6 5 4 8 8 C 1.38137 * 108.79162 * 179.97438 * 6 5 4 9 9 C 1.47064 * 125.43432 * 180.26670 * 8 6 5 10 10 O 1.21643 * 120.00197 * 179.69232 * 9 8 6 11 11 N 1.34777 * 119.99374 * 359.68944 * 9 8 6 12 12 C 1.47390 * 135.85480 * 359.64073 * 11 9 8 13 13 C 1.52072 * 87.41031 * 154.38351 * 12 11 9 14 14 C 1.47395 * 135.85075 * 179.97438 * 11 9 8 15 15 C 1.53512 * 117.20926 * 267.27663 * 13 12 11 16 16 C 1.54635 * 102.70415 * 262.92804 * 15 13 12 17 17 N 1.47142 * 107.37545 * 339.38446 * 16 15 13 18 18 C 1.36938 * 125.57919 * 179.03710 * 17 16 15 19 19 H 1.08007 * 119.99946 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00042 * 0.02639 * 18 17 16 21 21 N 1.31622 * 120.00178 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46846 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47125 * 120.00236 * 22 20 18 25 25 H 1.48501 * 109.47244 * 240.00583 * 22 20 18 26 26 C 1.47759 * 108.84335 * 359.08854 * 17 16 15 27 27 C 1.35875 * 109.13947 * 359.97438 * 8 6 5 28 28 C 1.40850 * 119.43426 * 359.94401 * 5 4 3 29 29 C 1.36437 * 119.68975 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46679 * 270.01968 * 1 2 3 31 31 H 1.08993 * 109.47025 * 30.01764 * 1 2 3 32 32 H 1.08995 * 109.47189 * 150.02357 * 1 2 3 33 33 H 1.08005 * 119.67312 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.09092 * 180.02562 * 4 3 2 35 35 H 1.09007 * 113.54003 * 268.98720 * 12 11 9 36 36 H 1.08997 * 113.54832 * 39.67218 * 12 11 9 37 37 H 1.09004 * 113.54434 * 320.32781 * 14 11 9 38 38 H 1.09000 * 113.54255 * 90.93639 * 14 11 9 39 39 H 1.09004 * 110.76734 * 21.23400 * 15 13 12 40 40 H 1.09006 * 110.76555 * 144.62920 * 15 13 12 41 41 H 1.08996 * 109.86235 * 98.83439 * 16 15 13 42 42 H 1.08997 * 109.86469 * 219.93480 * 16 15 13 43 43 H 0.96996 * 120.00186 * 179.97438 * 21 20 18 44 44 H 1.08994 * 110.40186 * 263.50544 * 26 17 16 45 45 H 1.08999 * 110.40784 * 141.07234 * 26 17 16 46 46 H 1.08003 * 126.13664 * 179.97438 * 27 8 6 47 47 H 1.07998 * 120.09175 * 359.97227 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.2070 0.0000 4 6 3.5718 1.2299 0.0005 5 6 4.2839 0.0336 0.0003 6 7 5.6266 -0.2620 0.0011 7 1 6.3477 0.3868 0.0011 8 6 5.7800 -1.6348 0.0009 9 6 7.0655 -2.3491 0.0071 10 8 7.0856 -3.5654 0.0120 11 7 8.2214 -1.6560 0.0074 12 6 8.6006 -0.2318 -0.0037 13 6 9.9028 -0.6444 0.6647 14 6 9.6564 -1.9926 0.0131 15 6 9.9461 -0.6097 2.1988 16 6 10.6049 0.7587 2.4896 17 7 11.3265 1.1662 1.2737 18 6 12.0281 2.3317 1.1165 19 1 12.5256 2.5405 0.1808 20 6 12.0999 3.2447 2.1596 21 7 11.4942 2.9900 3.3000 22 14 13.0576 4.8341 1.9454 23 1 13.6416 4.8801 0.5808 24 1 12.1452 5.9907 2.1321 25 1 14.1470 4.8953 2.9528 26 6 11.1691 0.1127 0.2497 27 6 4.5538 -2.2201 0.0005 28 6 3.5839 -1.1886 0.0007 29 6 2.1828 -1.1853 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5134 33 1 1.6450 2.1363 0.0004 34 1 4.0976 2.1732 0.0009 35 1 8.7356 0.1750 -1.0059 36 1 7.9657 0.3928 0.6247 37 1 9.9028 -2.8381 0.6554 38 1 10.0869 -2.0805 -0.9845 39 1 8.9394 -0.6501 2.6149 40 1 10.5587 -1.4237 2.5867 41 1 9.8383 1.4953 2.7298 42 1 11.3036 0.6642 3.3208 43 1 11.5447 3.6278 4.0291 44 1 12.0304 -0.5551 0.2562 45 1 11.0395 0.5579 -0.7368 46 1 4.3547 -3.2816 -0.0001 47 1 1.6393 -2.1185 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001313441588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:11 Heat of formation + Delta-G solvation = 91.939100 kcal Electronic energy + Delta-G solvation = -28776.501227 eV Core-core repulsion = 24926.720234 eV Total energy + Delta-G solvation = -3849.780993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78617 -40.63315 -38.44349 -37.30665 -35.81783 -32.45455 -32.38435 -31.64109 -29.90659 -29.15507 -28.68673 -26.89724 -26.19873 -25.78485 -24.12069 -23.08168 -21.77068 -20.74141 -20.39589 -19.71778 -18.69534 -17.79106 -17.34755 -16.77585 -16.05686 -15.81005 -15.32475 -15.07755 -14.80522 -14.73420 -14.40942 -14.14793 -13.95065 -13.80783 -13.73402 -13.40601 -13.18487 -12.95312 -12.56522 -12.42165 -12.35373 -12.09126 -11.95785 -11.82469 -11.30849 -11.14660 -11.05010 -11.01264 -10.80528 -10.61589 -10.37080 -10.17362 -10.04443 -10.00821 -9.90165 -9.73071 -8.80668 -8.69765 -8.26884 -7.90315 -6.94517 -5.80733 -3.15062 0.62778 1.42253 1.98981 2.61502 2.84187 3.27113 3.33354 3.39281 3.41661 3.69178 4.19517 4.38070 4.46385 4.50373 4.72395 4.79022 4.87546 4.99564 5.07535 5.14578 5.22865 5.28945 5.36768 5.40053 5.41653 5.46535 5.49023 5.54135 5.62927 5.65538 5.69460 5.70650 5.86610 5.88018 6.00078 6.11022 6.21626 6.33388 6.38394 6.42681 6.49948 6.52875 6.53369 6.58296 6.92099 7.23006 7.45801 7.50073 7.58211 7.72620 8.00184 8.14531 9.11670 9.71633 10.36399 11.30768 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.002754 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.394875 B =10165.353047 C =11855.081417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.126 4.126 5 C 0.107 3.893 6 N -0.576 5.576 7 H 0.419 0.581 8 C 0.029 3.971 9 C 0.609 3.391 10 O -0.529 6.529 11 N -0.642 5.642 12 C 0.110 3.890 13 C -0.101 4.101 14 C 0.122 3.878 15 C -0.118 4.118 16 C 0.179 3.821 17 N -0.605 5.605 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.153 3.847 27 C -0.114 4.114 28 C -0.115 4.115 29 C -0.063 4.063 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.252 0.748 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.155 0.845 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.257 -6.587 -7.372 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.147 4.147 5 C -0.003 4.003 6 N -0.182 5.182 7 H 0.261 0.739 8 C -0.081 4.081 9 C 0.399 3.601 10 O -0.406 6.406 11 N -0.377 5.377 12 C -0.013 4.013 13 C -0.103 4.103 14 C 0.000 4.000 15 C -0.157 4.157 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.027 3.973 27 C -0.141 4.141 28 C -0.119 4.119 29 C -0.082 4.082 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.173 0.827 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.208 -7.113 -7.236 19.977 hybrid contribution 0.919 1.337 -0.020 1.623 sum -16.289 -5.776 -7.256 18.744 Atomic orbital electron populations 1.20717 0.91149 1.02507 1.02096 1.19367 0.96033 0.92817 1.03784 1.20751 0.92806 0.97645 0.99590 1.20109 0.93877 0.95049 1.05623 1.18377 0.83080 0.95622 1.03239 1.42380 1.06393 1.06276 1.63188 0.73902 1.20113 0.94780 0.82334 1.10885 1.16680 0.80755 0.85993 0.76721 1.90833 1.86138 1.12184 1.51443 1.49751 1.05743 1.09872 1.72306 1.23045 0.95069 0.82205 1.00947 1.22163 0.95705 0.94630 0.97813 1.22816 0.77615 0.98488 1.01054 1.22500 1.00693 1.01161 0.91297 1.21232 0.94842 0.89070 0.89410 1.44553 1.60443 1.18133 1.10014 1.19086 1.24579 0.93305 0.98806 0.90292 1.24809 1.00599 0.98914 0.96049 1.69964 1.47172 1.35992 1.03698 0.86052 0.79197 0.83187 0.77349 1.20482 1.21765 1.21708 1.21148 0.92267 0.90578 0.93352 1.20852 0.89118 0.99271 1.04866 1.18162 0.93577 0.92201 1.08004 1.20222 0.91378 0.97814 0.98799 0.91502 0.91774 0.91774 0.85584 0.85770 0.88925 0.90690 0.89941 0.89349 0.92144 0.91473 0.93550 0.93637 0.93728 0.95285 0.93857 0.82744 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 9.99 36.01 0.36 -0.36 16 2 C -0.12 -1.12 5.84 -105.01 -0.61 -1.74 16 3 C -0.09 -0.84 9.66 -39.53 -0.38 -1.22 16 4 C -0.13 -1.36 10.08 -39.42 -0.40 -1.75 16 5 C 0.11 1.35 7.25 -83.98 -0.61 0.74 16 6 N -0.58 -7.30 5.99 -7.36 -0.04 -7.35 16 7 H 0.42 4.82 5.75 -40.82 -0.23 4.59 16 8 C 0.03 0.41 6.94 -82.29 -0.57 -0.16 16 9 C 0.61 9.51 8.05 -12.68 -0.10 9.41 16 10 O -0.53 -9.67 17.61 5.24 0.09 -9.58 16 11 N -0.64 -9.10 3.70 -187.14 -0.69 -9.79 16 12 C 0.11 1.47 6.59 -7.33 -0.05 1.43 16 13 C -0.10 -1.54 1.06 -155.23 -0.16 -1.71 16 14 C 0.12 1.64 8.02 -7.48 -0.06 1.58 16 15 C -0.12 -2.05 6.40 -25.61 -0.16 -2.21 16 16 C 0.18 4.04 5.39 -2.83 -0.02 4.03 16 17 N -0.60 -14.16 3.41 -170.53 -0.58 -14.74 16 18 C -0.23 -6.00 10.28 -15.06 -0.15 -6.16 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -25.95 10.30 55.49 0.57 -25.38 16 22 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.15 2.76 6.70 -3.22 -0.02 2.74 16 27 C -0.11 -1.52 10.53 -39.15 -0.41 -1.93 16 28 C -0.11 -1.45 6.16 -106.93 -0.66 -2.11 16 29 C -0.06 -0.67 9.68 -39.53 -0.38 -1.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.09 1.10 8.06 -51.92 -0.42 0.68 16 36 H 0.07 1.00 6.43 -51.93 -0.33 0.67 16 37 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 42 H 0.05 1.16 7.49 -51.93 -0.39 0.77 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 46 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -31.44 382.42 -11.19 -42.63 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.78 Total: 2.98 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -4.49 Total: -0.77 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.75 Total: -57.25 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.44 -11.19 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001313441588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.566 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds