Wall clock time and date at job start Tue Mar 31 2020 22:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38941 * 119.69391 * 2 1 4 4 C 1.37667 * 120.64882 * 179.97438 * 3 2 1 5 5 C 1.39222 * 119.80968 * 0.03809 * 4 3 2 6 6 N 1.37484 * 133.18009 * 180.02562 * 5 4 3 7 7 H 0.97004 * 125.60406 * 359.93146 * 6 5 4 8 8 C 1.38137 * 108.79162 * 179.97438 * 6 5 4 9 9 C 1.47064 * 125.43432 * 180.26670 * 8 6 5 10 10 O 1.21643 * 120.00197 * 179.69232 * 9 8 6 11 11 N 1.34777 * 119.99374 * 359.68944 * 9 8 6 12 12 C 1.47390 * 135.85480 * 359.64073 * 11 9 8 13 13 C 1.52072 * 87.41031 * 154.38351 * 12 11 9 14 14 C 1.47395 * 135.85075 * 179.97438 * 11 9 8 15 15 C 1.53512 * 117.20926 * 267.27663 * 13 12 11 16 16 C 1.54635 * 102.70415 * 262.92804 * 15 13 12 17 17 N 1.47142 * 107.37545 * 339.38446 * 16 15 13 18 18 C 1.36938 * 125.57919 * 179.03710 * 17 16 15 19 19 H 1.08007 * 119.99946 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00042 * 0.02639 * 18 17 16 21 21 N 1.31622 * 120.00178 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46846 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47125 * 120.00236 * 22 20 18 25 25 H 1.48501 * 109.47244 * 240.00583 * 22 20 18 26 26 C 1.47759 * 108.84335 * 359.08854 * 17 16 15 27 27 C 1.35875 * 109.13947 * 359.97438 * 8 6 5 28 28 C 1.40850 * 119.43426 * 359.94401 * 5 4 3 29 29 C 1.36437 * 119.68975 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46679 * 270.01968 * 1 2 3 31 31 H 1.08993 * 109.47025 * 30.01764 * 1 2 3 32 32 H 1.08995 * 109.47189 * 150.02357 * 1 2 3 33 33 H 1.08005 * 119.67312 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.09092 * 180.02562 * 4 3 2 35 35 H 1.09007 * 113.54003 * 268.98720 * 12 11 9 36 36 H 1.08997 * 113.54832 * 39.67218 * 12 11 9 37 37 H 1.09004 * 113.54434 * 320.32781 * 14 11 9 38 38 H 1.09000 * 113.54255 * 90.93639 * 14 11 9 39 39 H 1.09004 * 110.76734 * 21.23400 * 15 13 12 40 40 H 1.09006 * 110.76555 * 144.62920 * 15 13 12 41 41 H 1.08996 * 109.86235 * 98.83439 * 16 15 13 42 42 H 1.08997 * 109.86469 * 219.93480 * 16 15 13 43 43 H 0.96996 * 120.00186 * 179.97438 * 21 20 18 44 44 H 1.08994 * 110.40186 * 263.50544 * 26 17 16 45 45 H 1.08999 * 110.40784 * 141.07234 * 26 17 16 46 46 H 1.08003 * 126.13664 * 179.97438 * 27 8 6 47 47 H 1.07998 * 120.09175 * 359.97227 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.2070 0.0000 4 6 3.5718 1.2299 0.0005 5 6 4.2839 0.0336 0.0003 6 7 5.6266 -0.2620 0.0011 7 1 6.3477 0.3868 0.0011 8 6 5.7800 -1.6348 0.0009 9 6 7.0655 -2.3491 0.0071 10 8 7.0856 -3.5654 0.0120 11 7 8.2214 -1.6560 0.0074 12 6 8.6006 -0.2318 -0.0037 13 6 9.9028 -0.6444 0.6647 14 6 9.6564 -1.9926 0.0131 15 6 9.9461 -0.6097 2.1988 16 6 10.6049 0.7587 2.4896 17 7 11.3265 1.1662 1.2737 18 6 12.0281 2.3317 1.1165 19 1 12.5256 2.5405 0.1808 20 6 12.0999 3.2447 2.1596 21 7 11.4942 2.9900 3.3000 22 14 13.0576 4.8341 1.9454 23 1 13.6416 4.8801 0.5808 24 1 12.1452 5.9907 2.1321 25 1 14.1470 4.8953 2.9528 26 6 11.1691 0.1127 0.2497 27 6 4.5538 -2.2201 0.0005 28 6 3.5839 -1.1886 0.0007 29 6 2.1828 -1.1853 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5134 33 1 1.6450 2.1363 0.0004 34 1 4.0976 2.1732 0.0009 35 1 8.7356 0.1750 -1.0059 36 1 7.9657 0.3928 0.6247 37 1 9.9028 -2.8381 0.6554 38 1 10.0869 -2.0805 -0.9845 39 1 8.9394 -0.6501 2.6149 40 1 10.5587 -1.4237 2.5867 41 1 9.8383 1.4953 2.7298 42 1 11.3036 0.6642 3.3208 43 1 11.5447 3.6278 4.0291 44 1 12.0304 -0.5551 0.2562 45 1 11.0395 0.5579 -0.7368 46 1 4.3547 -3.2816 -0.0001 47 1 1.6393 -2.1185 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001313441588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:10 Heat of formation + Delta-G solvation = 74.578001 kcal Electronic energy + Delta-G solvation = -28777.254060 eV Core-core repulsion = 24926.720234 eV Total energy + Delta-G solvation = -3850.533827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.75906 -41.79341 -39.65796 -38.17576 -37.40584 -34.16099 -33.28765 -32.53175 -31.35999 -30.55232 -29.80972 -27.92374 -27.46756 -26.89626 -25.69781 -24.13060 -22.66583 -22.17641 -21.61208 -20.78701 -19.98762 -18.88918 -18.62034 -18.24417 -17.24729 -16.95740 -16.73837 -16.22988 -16.08301 -15.76665 -15.64144 -15.54098 -14.97350 -14.84571 -14.70268 -14.35785 -14.11869 -14.10370 -13.88543 -13.76699 -13.73110 -13.41013 -12.90870 -12.88396 -12.82508 -12.53258 -12.35382 -12.06706 -12.03865 -11.99611 -11.88066 -11.82053 -11.75632 -11.32291 -11.20740 -10.94411 -10.70198 -9.96351 -9.13937 -8.87793 -8.77569 -7.83418 -5.18257 -0.29663 0.60357 1.01655 1.47771 1.48425 1.51107 1.58362 1.88951 2.17727 2.50460 2.87087 3.08610 3.25376 3.40044 3.50064 3.65328 3.74196 3.96146 4.04937 4.05716 4.14022 4.19229 4.25519 4.33058 4.38412 4.47268 4.51025 4.57221 4.62162 4.70497 4.78562 4.81175 4.87665 4.93632 4.96416 4.97184 5.10551 5.11573 5.15888 5.25426 5.42465 5.49247 5.55508 5.63455 5.64053 5.75576 5.77284 6.11226 6.20104 6.32311 6.43111 6.83892 7.11520 7.78911 8.42676 9.27103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.002754 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.394875 B =10165.353047 C =11855.081417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.140 4.140 5 C 0.092 3.908 6 N -0.574 5.574 7 H 0.422 0.578 8 C 0.008 3.992 9 C 0.609 3.391 10 O -0.563 6.563 11 N -0.641 5.641 12 C 0.115 3.885 13 C -0.095 4.095 14 C 0.129 3.871 15 C -0.104 4.104 16 C 0.190 3.810 17 N -0.625 5.625 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.974 3.026 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.298 1.298 26 C 0.152 3.848 27 C -0.116 4.116 28 C -0.135 4.135 29 C -0.073 4.073 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.012 0.988 42 H 0.005 0.995 43 H 0.244 0.756 44 H 0.038 0.962 45 H 0.061 0.939 46 H 0.159 0.841 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.704 -6.372 -9.232 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.161 4.161 5 C -0.018 4.018 6 N -0.181 5.181 7 H 0.264 0.736 8 C -0.102 4.102 9 C 0.400 3.600 10 O -0.443 6.443 11 N -0.374 5.374 12 C -0.007 4.007 13 C -0.097 4.097 14 C 0.007 3.993 15 C -0.142 4.142 16 C 0.065 3.935 17 N -0.351 5.351 18 C -0.361 4.361 19 H 0.106 0.894 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.225 1.225 26 C 0.027 3.973 27 C -0.144 4.144 28 C -0.139 4.139 29 C -0.092 4.092 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.171 0.829 34 H 0.155 0.845 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.030 0.970 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.177 0.823 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.641 -6.903 -9.138 21.878 hybrid contribution 1.284 1.288 0.546 1.899 sum -17.358 -5.615 -8.592 20.165 Atomic orbital electron populations 1.20774 0.88908 1.03683 1.02950 1.19771 0.97701 0.92362 1.02215 1.21170 0.92488 0.98927 0.97690 1.20392 0.94609 0.94999 1.06077 1.18716 0.83033 0.96439 1.03625 1.42295 1.06697 1.05747 1.63358 0.73587 1.19966 0.94351 0.83023 1.12872 1.16824 0.81350 0.85659 0.76172 1.90804 1.86665 1.13509 1.53313 1.49705 1.05843 1.10159 1.71692 1.23122 0.93699 0.81934 1.01982 1.21954 0.95432 0.96210 0.96071 1.22884 0.77097 0.96969 1.02305 1.22285 1.00459 0.98102 0.93385 1.20902 0.93122 0.91036 0.88433 1.44824 1.60083 1.18655 1.11567 1.19496 1.23799 0.94046 0.98792 0.89417 1.25599 1.02233 1.02127 0.96098 1.70184 1.48985 1.36713 1.04347 0.85070 0.77523 0.79456 0.77664 1.18725 1.22210 1.22509 1.21318 0.93708 0.89593 0.92707 1.21047 0.89351 0.99792 1.04182 1.18395 0.94555 0.91981 1.09009 1.20510 0.90694 0.99229 0.98734 0.90681 0.90413 0.90887 0.82886 0.84498 0.86565 0.90846 0.89739 0.86609 0.91607 0.90507 0.96961 0.97717 0.94630 0.94384 0.92118 0.82326 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.99 71.24 0.71 -0.37 16 2 C -0.12 -1.97 5.84 -20.11 -0.12 -2.09 16 3 C -0.08 -1.38 9.66 22.30 0.22 -1.16 16 4 C -0.14 -2.81 10.08 22.37 0.23 -2.59 16 5 C 0.09 2.26 7.25 39.13 0.28 2.54 16 6 N -0.57 -14.33 5.99 -177.19 -1.06 -15.39 16 7 H 0.42 9.48 5.75 -92.71 -0.53 8.94 16 8 C 0.01 0.21 6.94 39.92 0.28 0.49 16 9 C 0.61 18.72 8.05 86.56 0.70 19.42 16 10 O -0.56 -20.51 17.61 -4.17 -0.07 -20.58 16 11 N -0.64 -17.17 3.70 -864.23 -3.19 -20.37 16 12 C 0.11 2.87 6.59 83.77 0.55 3.43 16 13 C -0.09 -2.73 1.06 -52.63 -0.06 -2.78 16 14 C 0.13 3.13 8.02 83.66 0.67 3.80 16 15 C -0.10 -3.58 6.40 31.32 0.20 -3.38 16 16 C 0.19 8.86 5.39 86.81 0.47 9.33 16 17 N -0.62 -29.26 3.41 -693.45 -2.36 -31.62 16 18 C -0.23 -12.13 10.28 84.03 0.86 -11.26 16 19 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 21 N -0.95 -55.68 10.30 21.65 0.22 -55.45 16 22 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 26 C 0.15 5.19 6.70 86.23 0.58 5.77 16 27 C -0.12 -3.10 10.53 22.55 0.24 -2.86 16 28 C -0.14 -3.33 6.16 -21.36 -0.13 -3.46 16 29 C -0.07 -1.43 9.68 22.30 0.22 -1.21 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 32 H 0.07 0.63 8.07 -2.39 -0.02 0.61 16 33 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.12 2.42 8.06 -2.38 -0.02 2.40 16 36 H 0.07 1.90 6.43 -2.39 -0.02 1.88 16 37 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 38 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 40 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 42 H 0.00 0.25 7.49 -2.39 -0.02 0.23 16 43 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 46 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 47 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.96 382.42 2.37 -67.59 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.46 Total: 19.29 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.36 Total: 10.37 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.40 Total: -122.83 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.07 Total: -20.58 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -69.96 2.37 -67.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001313441588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.170 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds