Wall clock time and date at job start Tue Mar 31 2020 23:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33227 * 126.01469 * 2 1 4 4 C 1.31534 * 109.75925 * 180.17359 * 3 2 1 5 5 O 1.35203 * 125.49637 * 179.82410 * 4 3 2 6 6 N 1.34946 * 109.01548 * 359.56198 * 4 3 2 7 7 H 0.97005 * 126.54801 * 180.27950 * 6 4 3 8 8 C 1.36718 * 126.01935 * 179.69400 * 2 1 3 9 9 C 1.46377 * 126.82448 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00141 * 359.97077 * 9 8 2 11 11 N 1.34781 * 119.99454 * 179.97438 * 9 8 2 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47041 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.47160 * 180.02562 * 14 13 12 16 16 C 1.46909 * 110.99573 * 66.05066 * 15 14 13 17 17 C 1.46900 * 110.99951 * 189.99845 * 15 14 13 18 18 C 1.50709 * 109.46909 * 170.00378 * 17 15 14 19 19 O 1.21298 * 119.99775 * 0.02562 * 18 17 15 20 20 N 1.34770 * 119.99949 * 180.02562 * 18 17 15 21 21 C 1.37103 * 119.99842 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00220 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99542 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00574 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99510 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47246 * 60.00208 * 25 23 21 27 27 H 1.48504 * 109.46875 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47188 * 299.99716 * 25 23 21 29 29 H 1.09009 * 109.46828 * 270.30281 * 1 2 3 30 30 H 1.08996 * 109.47048 * 30.30256 * 1 2 3 31 31 H 1.09001 * 109.46978 * 150.30769 * 1 2 3 32 32 H 0.96700 * 114.00205 * 269.69909 * 5 4 3 33 33 H 0.96997 * 120.00313 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47514 * 300.00424 * 12 11 9 35 35 H 1.09005 * 109.46974 * 60.00155 * 12 11 9 36 36 H 1.09000 * 109.47466 * 300.00208 * 13 12 11 37 37 H 1.09005 * 109.46783 * 60.00399 * 13 12 11 38 38 H 1.09000 * 109.47119 * 300.00370 * 14 13 12 39 39 H 1.08997 * 109.46791 * 60.00646 * 14 13 12 40 40 H 1.08994 * 109.47221 * 59.99794 * 16 15 14 41 41 H 1.09004 * 109.46731 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.47083 * 299.99346 * 16 15 14 43 43 H 1.08993 * 109.47338 * 290.00051 * 17 15 14 44 44 H 1.09000 * 109.46984 * 50.01144 * 17 15 14 45 45 H 0.97001 * 120.00053 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00489 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0038 5 8 4.6150 1.5464 -0.0082 6 7 3.6182 -0.6384 0.0034 7 1 4.4244 -1.1779 0.0065 8 6 2.3110 -1.1058 0.0059 9 6 1.8793 -2.5044 0.0129 10 8 0.6924 -2.7750 0.0143 11 7 2.7959 -3.4925 0.0177 12 6 2.3638 -4.8924 0.0252 13 6 3.5916 -5.8051 0.0289 14 6 3.1404 -7.2670 0.0361 15 7 4.3193 -8.1434 0.0402 16 6 5.0741 -8.0045 1.2929 17 6 3.9360 -9.5426 -0.1910 18 6 5.1736 -10.3704 -0.4244 19 8 6.2672 -9.8464 -0.4000 20 7 5.0650 -11.6929 -0.6602 21 6 6.1908 -12.4459 -0.8730 22 1 7.1645 -11.9792 -0.8521 23 6 6.0789 -13.8094 -1.1156 24 7 4.8941 -14.3772 -1.1416 25 14 7.6128 -14.8355 -1.4048 26 1 8.4947 -14.7544 -0.2128 27 1 7.2253 -16.2498 -1.6392 28 1 8.3378 -14.3180 -2.5931 29 1 -0.3633 0.0054 1.0278 30 1 -0.3633 0.8872 -0.5185 31 1 -0.3633 -0.8927 -0.5091 32 1 4.9238 1.7853 -0.8929 33 1 3.7415 -3.2769 0.0162 34 1 1.7659 -5.0834 0.9164 35 1 1.7653 -5.0927 -0.8636 36 1 4.1891 -5.6141 -0.8626 37 1 4.1904 -5.6049 0.9174 38 1 2.5427 -7.4584 0.9273 39 1 2.5418 -7.4669 -0.8527 40 1 4.4352 -8.2741 2.1338 41 1 5.9418 -8.6638 1.2693 42 1 5.4056 -6.9722 1.4048 43 1 3.4040 -9.9224 0.6811 44 1 3.2888 -9.6021 -1.0661 45 1 4.1904 -12.1120 -0.6794 46 1 4.8160 -15.3292 -1.3106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316829540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:40 Heat of formation + Delta-G solvation = -47.247893 kcal Electronic energy + Delta-G solvation = -27914.570775 eV Core-core repulsion = 23647.904918 eV Total energy + Delta-G solvation = -4266.665857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78505 -39.82041 -38.71471 -37.97819 -37.00237 -35.48589 -33.96343 -33.74978 -31.88488 -31.26940 -31.01372 -28.08782 -27.64151 -26.31661 -24.82295 -23.52526 -22.79632 -21.64322 -21.12191 -20.37097 -19.81502 -19.17656 -18.31957 -17.85950 -16.88657 -16.69142 -16.22533 -16.12462 -15.72945 -15.35797 -15.07006 -14.67895 -14.65723 -14.36820 -14.13706 -13.70140 -13.64319 -13.44593 -13.37642 -13.03984 -12.84565 -12.49877 -12.39712 -12.19106 -11.94937 -11.80721 -11.50997 -11.30949 -11.28605 -10.93929 -10.87816 -10.81449 -10.60527 -10.46225 -10.32913 -10.23624 -9.58977 -9.49289 -8.88231 -8.49563 -8.00910 -7.89993 -6.43855 -3.84920 0.63516 1.82019 2.15178 2.63135 2.83747 3.17895 3.23963 3.27895 3.28437 3.87382 3.92489 4.19696 4.20948 4.40951 4.62055 4.71614 4.84186 4.94796 5.03384 5.04281 5.22671 5.32288 5.40039 5.44467 5.51011 5.54354 5.58061 5.63992 5.68433 5.83038 5.87846 5.93111 5.95991 6.01406 6.05040 6.10569 6.25364 6.49812 6.86716 7.01621 7.20724 7.28288 7.33231 7.52667 7.68467 8.03755 8.59405 9.15634 9.52034 10.03792 10.73726 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.001487 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.360605 B =18821.470085 C =19558.579533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.117 3.883 3 N -0.488 5.488 4 C 0.415 3.585 5 O -0.441 6.441 6 N -0.556 5.556 7 H 0.423 0.577 8 C -0.087 4.087 9 C 0.597 3.403 10 O -0.519 6.519 11 N -0.727 5.727 12 C 0.121 3.879 13 C -0.128 4.128 14 C 0.058 3.942 15 N -0.519 5.519 16 C 0.020 3.980 17 C 0.046 3.954 18 C 0.443 3.557 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.395 0.605 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.014 0.986 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 26.319 1.908 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.018 4.018 3 N -0.219 5.219 4 C 0.114 3.886 5 O -0.242 6.242 6 N -0.175 5.175 7 H 0.262 0.738 8 C -0.201 4.201 9 C 0.383 3.617 10 O -0.394 6.394 11 N -0.378 5.378 12 C -0.002 4.002 13 C -0.167 4.167 14 C -0.071 4.071 15 N -0.243 5.243 16 C -0.128 4.128 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.267 0.733 33 H 0.228 0.772 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.033 0.967 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.487 27.218 2.107 28.060 hybrid contribution 1.255 -1.940 0.029 2.310 sum -5.233 25.278 2.136 25.903 Atomic orbital electron populations 1.20378 0.85758 1.04112 1.03526 1.21002 0.96995 0.85809 0.97949 1.70326 0.98579 1.30326 1.22718 1.20198 0.87463 0.78649 1.02312 1.84844 1.43228 1.61529 1.34623 1.43721 1.08774 1.07980 1.57019 0.73775 1.20795 0.83011 0.95238 1.21095 1.16631 0.85936 0.82336 0.76792 1.90864 1.15742 1.82788 1.50041 1.45901 1.09245 1.06852 1.75841 1.21415 0.97348 0.78472 1.03007 1.21789 0.96905 0.94270 1.03689 1.21996 0.92243 0.91748 1.01122 1.61549 1.21063 1.05648 1.36029 1.22579 0.99589 1.02497 0.88117 1.21866 0.97157 0.88306 1.01232 1.19731 0.89996 0.82881 0.84521 1.90477 1.28061 1.71445 1.56370 1.41864 1.09868 1.06102 1.62178 1.19646 0.88125 0.89772 1.45454 0.87974 1.25259 0.98145 0.97137 0.97349 1.69600 1.22636 1.12518 1.49509 0.85918 0.80974 0.78230 0.79082 1.19939 1.20970 1.19905 0.90280 0.90694 0.88798 0.73251 0.77159 0.90998 0.90732 0.90181 0.91116 0.94771 0.90472 0.96740 0.88587 0.92224 0.93412 0.89341 0.77472 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.87 36.01 0.36 -0.31 16 2 C 0.12 1.15 7.14 -82.53 -0.59 0.57 16 3 N -0.49 -4.97 11.22 -10.83 -0.12 -5.10 16 4 C 0.42 3.17 9.43 -89.60 -0.84 2.32 16 5 O -0.44 -2.28 13.62 -17.30 -0.24 -2.51 16 6 N -0.56 -3.35 6.12 -10.91 -0.07 -3.42 16 7 H 0.42 1.17 8.32 -40.82 -0.34 0.84 16 8 C -0.09 -0.76 7.08 -81.97 -0.58 -1.34 16 9 C 0.60 5.71 7.78 -12.98 -0.10 5.61 16 10 O -0.52 -6.47 14.80 5.16 0.08 -6.39 16 11 N -0.73 -5.32 5.55 -61.71 -0.34 -5.66 16 12 C 0.12 0.99 5.67 -4.04 -0.02 0.96 16 13 C -0.13 -1.12 5.25 -26.73 -0.14 -1.26 16 14 C 0.06 0.65 4.96 -3.82 -0.02 0.63 16 15 N -0.52 -8.07 4.50 -244.36 -1.10 -9.17 16 16 C 0.02 0.30 8.96 60.07 0.54 0.84 16 17 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 18 C 0.44 10.21 7.48 -10.98 -0.08 10.13 16 19 O -0.58 -15.19 13.91 5.54 0.08 -15.11 16 20 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 25 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.84 6.46 -51.93 -0.34 0.50 16 32 H 0.41 -0.06 9.06 45.56 0.41 0.35 16 33 H 0.39 1.89 7.71 -40.82 -0.31 1.57 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 38 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 39 H 0.08 0.82 7.93 -51.93 -0.41 0.40 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 1.82 5.82 -51.93 -0.30 1.52 16 42 H 0.06 0.76 6.47 -51.93 -0.34 0.43 16 43 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 45 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -35.80 387.90 -7.57 -43.37 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.59 Total: 8.98 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -1.75 Total: 11.02 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.96 Total: -60.96 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.08 Total: -24.02 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.80 -7.57 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316829540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.880 kcal (2) G-P(sol) polarization free energy of solvation -35.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds