Wall clock time and date at job start Tue Mar 31 2020 23:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33227 * 126.01469 * 2 1 4 4 C 1.31534 * 109.75925 * 180.17359 * 3 2 1 5 5 O 1.35203 * 125.49637 * 179.82410 * 4 3 2 6 6 N 1.34946 * 109.01548 * 359.56198 * 4 3 2 7 7 H 0.97005 * 126.54801 * 180.27950 * 6 4 3 8 8 C 1.36718 * 126.01935 * 179.69400 * 2 1 3 9 9 C 1.46377 * 126.82448 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00141 * 359.97077 * 9 8 2 11 11 N 1.34781 * 119.99454 * 179.97438 * 9 8 2 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47041 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.47160 * 180.02562 * 14 13 12 16 16 C 1.46909 * 110.99573 * 66.05066 * 15 14 13 17 17 C 1.46900 * 110.99951 * 189.99845 * 15 14 13 18 18 C 1.50709 * 109.46909 * 170.00378 * 17 15 14 19 19 O 1.21298 * 119.99775 * 0.02562 * 18 17 15 20 20 N 1.34770 * 119.99949 * 180.02562 * 18 17 15 21 21 C 1.37103 * 119.99842 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00220 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99542 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00574 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99510 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47246 * 60.00208 * 25 23 21 27 27 H 1.48504 * 109.46875 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47188 * 299.99716 * 25 23 21 29 29 H 1.09009 * 109.46828 * 270.30281 * 1 2 3 30 30 H 1.08996 * 109.47048 * 30.30256 * 1 2 3 31 31 H 1.09001 * 109.46978 * 150.30769 * 1 2 3 32 32 H 0.96700 * 114.00205 * 269.69909 * 5 4 3 33 33 H 0.96997 * 120.00313 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47514 * 300.00424 * 12 11 9 35 35 H 1.09005 * 109.46974 * 60.00155 * 12 11 9 36 36 H 1.09000 * 109.47466 * 300.00208 * 13 12 11 37 37 H 1.09005 * 109.46783 * 60.00399 * 13 12 11 38 38 H 1.09000 * 109.47119 * 300.00370 * 14 13 12 39 39 H 1.08997 * 109.46791 * 60.00646 * 14 13 12 40 40 H 1.08994 * 109.47221 * 59.99794 * 16 15 14 41 41 H 1.09004 * 109.46731 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.47083 * 299.99346 * 16 15 14 43 43 H 1.08993 * 109.47338 * 290.00051 * 17 15 14 44 44 H 1.09000 * 109.46984 * 50.01144 * 17 15 14 45 45 H 0.97001 * 120.00053 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00489 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0038 5 8 4.6150 1.5464 -0.0082 6 7 3.6182 -0.6384 0.0034 7 1 4.4244 -1.1779 0.0065 8 6 2.3110 -1.1058 0.0059 9 6 1.8793 -2.5044 0.0129 10 8 0.6924 -2.7750 0.0143 11 7 2.7959 -3.4925 0.0177 12 6 2.3638 -4.8924 0.0252 13 6 3.5916 -5.8051 0.0289 14 6 3.1404 -7.2670 0.0361 15 7 4.3193 -8.1434 0.0402 16 6 5.0741 -8.0045 1.2929 17 6 3.9360 -9.5426 -0.1910 18 6 5.1736 -10.3704 -0.4244 19 8 6.2672 -9.8464 -0.4000 20 7 5.0650 -11.6929 -0.6602 21 6 6.1908 -12.4459 -0.8730 22 1 7.1645 -11.9792 -0.8521 23 6 6.0789 -13.8094 -1.1156 24 7 4.8941 -14.3772 -1.1416 25 14 7.6128 -14.8355 -1.4048 26 1 8.4947 -14.7544 -0.2128 27 1 7.2253 -16.2498 -1.6392 28 1 8.3378 -14.3180 -2.5931 29 1 -0.3633 0.0054 1.0278 30 1 -0.3633 0.8872 -0.5185 31 1 -0.3633 -0.8927 -0.5091 32 1 4.9238 1.7853 -0.8929 33 1 3.7415 -3.2769 0.0162 34 1 1.7659 -5.0834 0.9164 35 1 1.7653 -5.0927 -0.8636 36 1 4.1891 -5.6141 -0.8626 37 1 4.1904 -5.6049 0.9174 38 1 2.5427 -7.4584 0.9273 39 1 2.5418 -7.4669 -0.8527 40 1 4.4352 -8.2741 2.1338 41 1 5.9418 -8.6638 1.2693 42 1 5.4056 -6.9722 1.4048 43 1 3.4040 -9.9224 0.6811 44 1 3.2888 -9.6021 -1.0661 45 1 4.1904 -12.1120 -0.6794 46 1 4.8160 -15.3292 -1.3106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316829540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:39 Heat of formation + Delta-G solvation = -80.814754 kcal Electronic energy + Delta-G solvation = -27916.026343 eV Core-core repulsion = 23647.904918 eV Total energy + Delta-G solvation = -4268.121425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.38078 -40.57302 -40.32006 -38.46812 -38.22011 -36.39444 -35.81097 -34.43973 -33.27717 -32.68476 -31.71252 -29.41151 -28.46591 -27.34085 -26.46189 -24.43437 -23.59342 -22.30142 -22.04216 -21.03340 -20.95674 -20.36206 -19.83779 -18.88013 -17.85315 -17.47996 -17.24280 -16.98533 -16.61594 -16.48947 -16.44650 -16.15497 -15.72398 -15.48284 -15.11872 -15.05618 -14.81151 -14.57877 -14.24385 -13.74155 -13.62093 -13.46844 -13.39035 -13.32409 -13.07380 -13.00976 -12.81658 -12.71290 -12.50828 -12.40066 -12.32318 -12.12063 -11.65027 -11.53824 -11.43927 -11.21926 -11.05744 -10.28864 -10.25604 -9.98739 -9.49860 -9.18800 -8.45172 -5.93858 0.02125 1.29551 1.40308 1.42186 1.52895 1.54219 1.96797 2.07510 2.13978 2.29620 2.78059 2.83507 3.21801 3.44337 3.66298 3.84149 3.97061 4.00589 4.08706 4.14907 4.32392 4.40658 4.43514 4.50979 4.56547 4.61447 4.64839 4.76707 4.81266 4.82597 4.93646 4.95481 5.08575 5.19102 5.24540 5.34632 5.42096 5.45068 5.77331 5.89546 6.08300 6.24138 6.30625 6.62341 6.63408 6.67701 7.01589 7.14442 7.58546 8.14336 8.71906 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.001487 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.360605 B =18821.470085 C =19558.579533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.099 3.901 3 N -0.522 5.522 4 C 0.425 3.575 5 O -0.443 6.443 6 N -0.539 5.539 7 H 0.439 0.561 8 C -0.093 4.093 9 C 0.598 3.402 10 O -0.552 6.552 11 N -0.715 5.715 12 C 0.128 3.872 13 C -0.115 4.115 14 C 0.057 3.943 15 N -0.537 5.537 16 C 0.024 3.976 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.614 6.614 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.433 0.567 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 27.026 1.951 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 N -0.254 5.254 4 C 0.122 3.878 5 O -0.248 6.248 6 N -0.159 5.159 7 H 0.281 0.719 8 C -0.208 4.208 9 C 0.385 3.615 10 O -0.431 6.431 11 N -0.366 5.366 12 C 0.005 3.995 13 C -0.153 4.153 14 C -0.071 4.071 15 N -0.261 5.261 16 C -0.123 4.123 17 C -0.075 4.075 18 C 0.228 3.772 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.295 0.705 33 H 0.245 0.755 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.197 27.932 2.136 28.690 hybrid contribution 1.226 -2.039 0.023 2.379 sum -4.971 25.893 2.159 26.454 Atomic orbital electron populations 1.20344 0.85485 1.03994 1.03624 1.21253 0.97639 0.86284 0.98414 1.70283 0.99825 1.30998 1.24313 1.20229 0.87461 0.79268 1.00796 1.84814 1.42184 1.60963 1.36816 1.43541 1.08575 1.07663 1.56132 0.71872 1.20601 0.83904 0.94617 1.21686 1.16706 0.85652 0.82829 0.76348 1.90847 1.17163 1.83296 1.51755 1.45751 1.09790 1.06226 1.74832 1.21283 0.96922 0.78575 1.02765 1.21636 0.96982 0.92752 1.03945 1.22095 0.90840 0.92045 1.02132 1.61513 1.23228 1.04997 1.36395 1.22466 0.98279 1.02983 0.88614 1.21745 0.94124 0.88663 1.02928 1.20806 0.91540 0.82552 0.82271 1.90456 1.30257 1.72069 1.57263 1.41946 1.09346 1.06903 1.63105 1.19623 0.88242 0.90847 1.47565 0.90262 1.26022 1.01122 0.97601 0.96537 1.69664 1.24031 1.12986 1.49493 0.84999 0.77512 0.77046 0.78831 1.19727 1.19603 1.19754 0.90081 0.89946 0.89670 0.70450 0.75514 0.91228 0.91119 0.90353 0.90412 0.93564 0.89644 0.95456 0.92903 0.89730 0.91616 0.87227 0.77069 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 9.87 71.24 0.70 -0.59 16 2 C 0.10 1.91 7.14 41.99 0.30 2.21 16 3 N -0.52 -10.23 11.22 -301.67 -3.39 -13.62 16 4 C 0.42 5.78 9.43 179.99 1.70 7.48 16 5 O -0.44 -3.60 13.62 -84.83 -1.16 -4.75 16 6 N -0.54 -5.47 6.12 -300.14 -1.84 -7.31 16 7 H 0.44 1.32 8.32 -92.70 -0.77 0.55 16 8 C -0.09 -1.52 7.08 39.80 0.28 -1.24 16 9 C 0.60 10.77 7.78 86.36 0.67 11.44 16 10 O -0.55 -13.55 14.80 -4.45 -0.07 -13.62 16 11 N -0.71 -8.98 5.55 -467.34 -2.59 -11.58 16 12 C 0.13 1.80 5.67 86.38 0.49 2.29 16 13 C -0.12 -1.70 5.25 30.59 0.16 -1.53 16 14 C 0.06 1.12 4.96 86.30 0.43 1.54 16 15 N -0.54 -15.71 4.50 -927.02 -4.17 -19.88 16 16 C 0.02 0.71 8.96 127.69 1.14 1.86 16 17 C 0.06 1.87 5.45 85.56 0.47 2.34 16 18 C 0.44 20.48 7.48 87.66 0.66 21.13 16 19 O -0.61 -32.96 13.91 -3.09 -0.04 -33.00 16 20 N -0.58 -29.12 5.29 -306.98 -1.62 -30.75 16 21 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 25 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.57 6.46 -2.39 -0.02 1.55 16 32 H 0.43 -1.20 9.06 -74.06 -0.67 -1.87 16 33 H 0.41 2.82 7.71 -92.71 -0.72 2.10 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.06 6.55 -2.38 -0.02 1.05 16 38 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.09 1.56 7.93 -2.39 -0.02 1.54 16 40 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.05 2.02 5.82 -2.39 -0.01 2.00 16 42 H 0.08 1.97 6.47 -2.39 -0.02 1.96 16 43 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 44 H 0.11 3.17 7.93 -2.39 -0.02 3.15 16 45 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 46 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -78.58 387.90 -6.10 -84.68 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -1.81 Total: 25.54 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 8.28 Total: 28.80 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -13.33 Total: -132.16 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -1.26 Total: -51.37 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -78.58 -6.10 -84.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316829540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.866 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds