Wall clock time and date at job start Tue Mar 31 2020 22:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46728 * 179.97438 * 11 10 8 13 13 C 1.38231 * 119.99621 * 269.71972 * 12 11 10 14 14 C 1.38237 * 119.99527 * 179.74466 * 13 12 11 15 15 C 1.38230 * 120.00041 * 0.53928 * 14 13 12 16 16 C 1.50705 * 120.00037 * 179.76744 * 15 14 13 17 17 C 1.53001 * 109.46958 * 269.97419 * 16 15 14 18 18 N 1.46500 * 109.47294 * 180.02562 * 17 16 15 19 19 C 1.36932 * 120.00328 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99957 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00018 * 180.02562 * 19 18 17 22 22 N 1.31611 * 120.00137 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99880 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47143 * 59.99383 * 23 21 19 25 25 H 1.48496 * 109.47120 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46962 * 299.99770 * 23 21 19 27 27 C 1.38235 * 120.00297 * 359.73720 * 15 14 13 28 28 C 1.38230 * 120.00107 * 90.00367 * 12 11 10 29 29 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 30 30 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 31 31 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 32 32 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 33 33 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 34 34 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 37 37 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 38 38 H 1.08003 * 120.00210 * 0.02562 * 13 12 11 39 39 H 1.08010 * 119.99954 * 180.29473 * 14 13 12 40 40 H 1.08995 * 109.47172 * 29.97037 * 16 15 14 41 41 H 1.08999 * 109.47413 * 149.97091 * 16 15 14 42 42 H 1.09008 * 109.47059 * 299.99498 * 17 16 15 43 43 H 1.08999 * 109.47326 * 59.99619 * 17 16 15 44 44 H 0.97007 * 119.99644 * 359.97438 * 18 17 16 45 45 H 0.97008 * 120.00114 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.00392 * 180.02562 * 27 15 14 47 47 H 1.08007 * 120.00340 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5144 -6.0497 0.2937 13 6 3.0769 -6.6296 -0.8280 14 6 3.9988 -7.6503 -0.6896 15 6 4.3499 -8.0985 0.5700 16 6 5.3511 -9.2148 0.7207 17 6 4.6195 -10.5586 0.7269 18 7 5.5927 -11.6437 0.8740 19 6 5.1676 -12.9450 0.9051 20 1 4.1149 -13.1714 0.8217 21 6 6.0897 -13.9732 1.0450 22 7 7.3725 -13.6973 1.1472 23 14 5.5097 -15.7484 1.0883 24 1 4.8036 -16.0694 -0.1780 25 1 6.6809 -16.6481 1.2434 26 1 4.5836 -15.9388 2.2334 27 6 3.7831 -7.5224 1.6915 28 6 2.8655 -6.4979 1.5533 29 1 -0.3633 -0.1128 -1.0215 30 1 -0.3633 0.9411 0.4130 31 1 -0.3633 -0.8281 0.6085 32 1 1.6967 2.1345 -0.0007 33 1 4.1559 2.0762 0.0001 34 1 4.1871 -2.0727 0.0010 35 1 3.1804 -3.6201 0.2231 36 1 0.8105 -4.9600 0.9755 37 1 0.9715 -5.0555 -0.7946 38 1 2.7995 -6.2822 -1.8122 39 1 4.4420 -8.1002 -1.5658 40 1 6.0537 -9.1875 -0.1121 41 1 5.8937 -9.0922 1.6580 42 1 3.9168 -10.5859 1.5598 43 1 4.0769 -10.6812 -0.2105 44 1 6.5382 -11.4404 0.9485 45 1 8.0169 -14.4158 1.2446 46 1 4.0577 -7.8723 2.6757 47 1 2.4228 -6.0476 2.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317371174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:12 Heat of formation + Delta-G solvation = 27.660247 kcal Electronic energy + Delta-G solvation = -26786.123883 eV Core-core repulsion = 22933.555550 eV Total energy + Delta-G solvation = -3852.568333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21725 -39.82353 -39.09476 -36.00043 -34.95956 -34.14119 -33.04122 -32.00434 -30.97343 -30.79726 -28.84055 -28.05989 -25.89931 -24.66768 -23.50717 -22.76610 -22.60019 -21.59061 -21.19903 -20.49701 -18.41866 -17.30423 -17.14905 -16.79870 -16.10844 -15.98918 -15.77819 -15.37890 -15.24605 -14.93324 -14.64998 -14.37369 -14.04042 -13.65340 -13.56829 -13.40555 -13.28778 -13.26449 -13.16654 -13.02105 -12.71071 -12.57104 -12.42482 -12.34274 -11.25004 -11.21460 -11.10543 -10.88756 -10.71451 -10.60681 -10.51961 -10.10906 -10.06615 -9.83625 -9.77087 -9.72047 -9.43127 -8.96368 -8.86522 -8.60051 -6.93639 -5.77028 -3.06109 0.14446 0.67483 1.14833 1.37840 2.42468 2.78651 3.32898 3.44278 3.48359 3.49622 3.73648 3.79498 4.14164 4.18263 4.30101 4.41947 4.52639 4.59262 4.72031 4.86586 4.94595 5.00592 5.01839 5.09180 5.11019 5.28903 5.32689 5.38257 5.46899 5.51635 5.58955 5.63867 5.74707 5.82966 5.84424 5.89385 6.00214 6.05622 6.09155 6.18304 6.26530 6.42874 6.45677 6.59316 6.80061 6.91575 6.96561 7.04772 7.34543 7.69265 7.74646 8.41771 9.52833 10.10042 10.44994 11.45768 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.001533 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.433725 B =18262.539320 C =18864.115987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.020 3.980 3 C -0.185 4.185 4 C 0.124 3.876 5 N -0.492 5.492 6 C 0.141 3.859 7 C -0.195 4.195 8 C 0.563 3.437 9 O -0.530 6.530 10 N -0.719 5.719 11 C 0.167 3.833 12 C -0.130 4.130 13 C -0.098 4.098 14 C -0.118 4.118 15 C -0.050 4.050 16 C -0.095 4.095 17 C 0.161 3.839 18 N -0.734 5.734 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.118 4.118 28 C -0.098 4.098 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.402 0.598 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.125 0.875 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 32.530 -2.433 34.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.011 3.989 3 C -0.205 4.205 4 C -0.031 4.031 5 N -0.201 5.201 6 C -0.018 4.018 7 C -0.200 4.200 8 C 0.350 3.650 9 O -0.408 6.408 10 N -0.371 5.371 11 C 0.044 3.956 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.136 4.136 15 C -0.051 4.051 16 C -0.133 4.133 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.136 4.136 28 C -0.116 4.116 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.237 0.763 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.066 0.934 46 H 0.143 0.857 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.090 32.343 -2.509 34.283 hybrid contribution -0.277 -0.996 0.076 1.037 sum -11.367 31.347 -2.433 33.433 Atomic orbital electron populations 1.21115 0.88986 1.03718 1.04220 1.20525 0.97629 0.91310 0.89393 1.22114 0.95591 0.98777 1.04036 1.23022 0.91801 0.96497 0.91787 1.67724 1.40830 0.98297 1.13233 1.23010 0.90366 0.96726 0.91726 1.20859 0.95215 0.94284 1.09642 1.18027 0.86934 0.83411 0.76660 1.90746 1.13463 1.87046 1.49562 1.46070 1.11097 1.05576 1.74318 1.20194 0.92884 0.79376 1.03106 1.19680 1.00413 0.99108 0.93862 1.21017 0.96446 0.96296 0.97875 1.21132 0.98117 0.97010 0.97349 1.20098 0.96391 0.95620 0.92979 1.20881 0.96360 0.92937 1.03088 1.20585 0.92384 0.85750 0.97936 1.42361 1.05358 1.01479 1.88639 1.19194 0.92664 0.83105 1.42286 0.91218 1.24744 0.95323 0.98015 1.02874 1.69648 1.00105 1.31459 1.57044 0.86250 0.77215 0.84752 0.77870 1.21245 1.21639 1.21241 1.21130 0.97212 0.96414 0.98850 1.21015 0.97359 0.96842 0.96422 0.89892 0.91709 0.88197 0.83996 0.82114 0.82409 0.76279 0.90435 0.90424 0.86134 0.85663 0.90750 0.90752 0.96260 0.96256 0.78271 0.93450 0.85669 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 8.86 36.00 0.32 -0.54 16 2 C 0.02 0.15 5.95 -103.91 -0.62 -0.47 16 3 C -0.19 -1.07 9.78 -39.50 -0.39 -1.46 16 4 C 0.12 0.78 11.17 -17.47 -0.20 0.58 16 5 N -0.49 -4.13 10.35 -12.91 -0.13 -4.27 16 6 C 0.14 1.07 10.70 -17.13 -0.18 0.89 16 7 C -0.19 -1.61 5.89 -104.82 -0.62 -2.23 16 8 C 0.56 5.27 7.72 -12.33 -0.10 5.18 16 9 O -0.53 -6.30 13.50 5.32 0.07 -6.23 16 10 N -0.72 -5.60 5.50 -62.43 -0.34 -5.94 16 11 C 0.17 1.43 5.80 -5.19 -0.03 1.40 16 12 C -0.13 -1.24 5.25 -104.63 -0.55 -1.79 16 13 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 14 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 15 C -0.05 -0.67 5.13 -104.62 -0.54 -1.21 16 16 C -0.10 -1.50 5.46 -27.88 -0.15 -1.66 16 17 C 0.16 3.25 6.24 -4.04 -0.03 3.23 16 18 N -0.73 -18.78 5.60 -59.91 -0.34 -19.11 16 19 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.39 5.50 -17.44 -0.10 -0.49 16 22 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 28 C -0.10 -1.00 9.70 -39.59 -0.38 -1.38 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.10 0.88 5.93 -51.93 -0.31 0.58 16 32 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 33 H 0.16 0.54 8.06 -52.48 -0.42 0.11 16 34 H 0.16 0.86 6.47 -52.48 -0.34 0.52 16 35 H 0.40 2.47 6.57 -40.82 -0.27 2.20 16 36 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 41 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 42 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -33.72 397.09 -10.59 -44.31 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.68 Total: 7.30 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -4.85 Total: -11.92 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.09 Total: -56.91 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: 0.07 Total: -6.23 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.72 -10.59 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317371174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.968 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds