Wall clock time and date at job start Tue Mar 31 2020 22:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46728 * 179.97438 * 11 10 8 13 13 C 1.38231 * 119.99621 * 269.71972 * 12 11 10 14 14 C 1.38237 * 119.99527 * 179.74466 * 13 12 11 15 15 C 1.38230 * 120.00041 * 0.53928 * 14 13 12 16 16 C 1.50705 * 120.00037 * 179.76744 * 15 14 13 17 17 C 1.53001 * 109.46958 * 269.97419 * 16 15 14 18 18 N 1.46500 * 109.47294 * 180.02562 * 17 16 15 19 19 C 1.36932 * 120.00328 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99957 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00018 * 180.02562 * 19 18 17 22 22 N 1.31611 * 120.00137 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99880 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47143 * 59.99383 * 23 21 19 25 25 H 1.48496 * 109.47120 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46962 * 299.99770 * 23 21 19 27 27 C 1.38235 * 120.00297 * 359.73720 * 15 14 13 28 28 C 1.38230 * 120.00107 * 90.00367 * 12 11 10 29 29 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 30 30 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 31 31 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 32 32 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 33 33 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 34 34 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 37 37 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 38 38 H 1.08003 * 120.00210 * 0.02562 * 13 12 11 39 39 H 1.08010 * 119.99954 * 180.29473 * 14 13 12 40 40 H 1.08995 * 109.47172 * 29.97037 * 16 15 14 41 41 H 1.08999 * 109.47413 * 149.97091 * 16 15 14 42 42 H 1.09008 * 109.47059 * 299.99498 * 17 16 15 43 43 H 1.08999 * 109.47326 * 59.99619 * 17 16 15 44 44 H 0.97007 * 119.99644 * 359.97438 * 18 17 16 45 45 H 0.97008 * 120.00114 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.00392 * 180.02562 * 27 15 14 47 47 H 1.08007 * 120.00340 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5144 -6.0497 0.2937 13 6 3.0769 -6.6296 -0.8280 14 6 3.9988 -7.6503 -0.6896 15 6 4.3499 -8.0985 0.5700 16 6 5.3511 -9.2148 0.7207 17 6 4.6195 -10.5586 0.7269 18 7 5.5927 -11.6437 0.8740 19 6 5.1676 -12.9450 0.9051 20 1 4.1149 -13.1714 0.8217 21 6 6.0897 -13.9732 1.0450 22 7 7.3725 -13.6973 1.1472 23 14 5.5097 -15.7484 1.0883 24 1 4.8036 -16.0694 -0.1780 25 1 6.6809 -16.6481 1.2434 26 1 4.5836 -15.9388 2.2334 27 6 3.7831 -7.5224 1.6915 28 6 2.8655 -6.4979 1.5533 29 1 -0.3633 -0.1128 -1.0215 30 1 -0.3633 0.9411 0.4130 31 1 -0.3633 -0.8281 0.6085 32 1 1.6967 2.1345 -0.0007 33 1 4.1559 2.0762 0.0001 34 1 4.1871 -2.0727 0.0010 35 1 3.1804 -3.6201 0.2231 36 1 0.8105 -4.9600 0.9755 37 1 0.9715 -5.0555 -0.7946 38 1 2.7995 -6.2822 -1.8122 39 1 4.4420 -8.1002 -1.5658 40 1 6.0537 -9.1875 -0.1121 41 1 5.8937 -9.0922 1.6580 42 1 3.9168 -10.5859 1.5598 43 1 4.0769 -10.6812 -0.2105 44 1 6.5382 -11.4404 0.9485 45 1 8.0169 -14.4158 1.2446 46 1 4.0577 -7.8723 2.6757 47 1 2.4228 -6.0476 2.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317371174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:11 Heat of formation + Delta-G solvation = 7.251590 kcal Electronic energy + Delta-G solvation = -26787.008868 eV Core-core repulsion = 22933.555550 eV Total energy + Delta-G solvation = -3853.453319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80409 -40.62774 -39.84310 -37.24686 -36.21303 -34.76902 -34.35772 -32.99481 -32.12071 -31.84551 -29.95208 -28.82569 -27.04157 -25.58630 -24.88233 -23.64196 -23.34852 -22.92964 -21.86005 -21.54926 -19.22800 -19.04997 -17.88077 -17.29719 -16.92358 -16.89906 -16.61292 -16.52278 -16.19708 -16.00057 -15.58983 -15.39697 -15.16257 -15.09535 -14.81608 -14.62805 -14.27383 -13.84507 -13.79091 -13.67961 -13.58177 -13.50661 -13.38218 -12.98492 -12.94652 -12.84567 -12.51448 -12.36047 -12.17805 -12.02359 -11.80487 -11.69191 -11.15930 -10.94875 -10.64605 -10.43594 -10.29314 -10.07692 -9.82187 -9.56160 -9.03492 -7.96978 -5.26872 -0.39231 0.16704 0.25107 0.50410 1.46898 1.50163 1.56517 1.77910 2.09553 2.54936 2.79246 2.87155 3.31183 3.36354 3.61177 3.64107 3.69464 3.80152 3.83623 3.87766 4.01741 4.14287 4.18163 4.37688 4.41253 4.45221 4.49641 4.55714 4.56502 4.65085 4.72114 4.74421 4.76929 4.78561 4.83227 5.06534 5.10975 5.13021 5.25079 5.26273 5.27163 5.40913 5.45146 5.49454 5.60769 5.61254 5.78422 6.06626 6.25099 6.40514 6.84488 7.07954 7.31345 8.05836 8.30309 9.26129 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.001533 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.433725 B =18262.539320 C =18864.115987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.005 3.995 3 C -0.178 4.178 4 C 0.121 3.879 5 N -0.517 5.517 6 C 0.137 3.863 7 C -0.209 4.209 8 C 0.563 3.437 9 O -0.560 6.560 10 N -0.710 5.710 11 C 0.172 3.828 12 C -0.117 4.117 13 C -0.095 4.095 14 C -0.126 4.126 15 C -0.070 4.070 16 C -0.080 4.080 17 C 0.162 3.838 18 N -0.747 5.747 19 C -0.253 4.253 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.976 3.024 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.277 1.277 27 C -0.126 4.126 28 C -0.095 4.095 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.172 0.828 33 H 0.190 0.810 34 H 0.173 0.827 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.375 0.625 45 H 0.253 0.747 46 H 0.127 0.873 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 34.366 -2.588 36.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.004 4.004 3 C -0.198 4.198 4 C -0.034 4.034 5 N -0.226 5.226 6 C -0.022 4.022 7 C -0.214 4.214 8 C 0.351 3.649 9 O -0.440 6.440 10 N -0.362 5.362 11 C 0.049 3.951 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.144 4.144 15 C -0.071 4.071 16 C -0.117 4.117 17 C 0.035 3.965 18 N -0.390 5.390 19 C -0.385 4.385 20 H 0.092 0.908 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.804 3.196 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.144 4.144 28 C -0.114 4.114 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.189 0.811 33 H 0.207 0.793 34 H 0.190 0.810 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.207 0.793 45 H 0.061 0.939 46 H 0.145 0.855 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.148 34.199 -2.666 36.390 hybrid contribution -0.010 -1.419 0.114 1.423 sum -12.159 32.780 -2.553 35.055 Atomic orbital electron populations 1.21039 0.88837 1.04017 1.03623 1.20777 0.98000 0.91891 0.89723 1.22412 0.95494 0.99287 1.02584 1.23561 0.92383 0.96920 0.90532 1.67767 1.41612 0.99070 1.14184 1.23222 0.90202 0.97332 0.91430 1.20850 0.95579 0.94006 1.11005 1.18224 0.86613 0.84031 0.76077 1.90736 1.14702 1.87485 1.51115 1.45957 1.11505 1.05003 1.73699 1.20115 0.92534 0.79233 1.03210 1.19772 0.99686 0.98738 0.93517 1.21212 0.95582 0.95472 0.99067 1.21219 0.98661 0.97627 0.96863 1.19905 0.97103 0.95886 0.94188 1.20641 0.96583 0.91608 1.02900 1.20698 0.91797 0.86623 0.97338 1.42580 1.05823 1.02030 1.88589 1.19606 0.92954 0.84566 1.41344 0.90829 1.25595 0.95484 1.02233 1.03257 1.69806 1.01151 1.32409 1.58463 0.85185 0.76680 0.79513 0.78215 1.20343 1.21861 1.20337 1.21216 0.97653 0.96980 0.98537 1.21208 0.96601 0.96091 0.97456 0.90389 0.89467 0.90331 0.81073 0.79318 0.80997 0.75231 0.90391 0.90383 0.84170 0.85520 0.90973 0.90987 0.96494 0.96480 0.79307 0.93868 0.85541 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 8.86 71.24 0.63 -0.92 16 2 C 0.00 0.06 5.95 -19.40 -0.12 -0.05 16 3 C -0.18 -1.64 9.78 22.32 0.22 -1.42 16 4 C 0.12 1.24 11.17 84.69 0.95 2.19 16 5 N -0.52 -7.89 10.35 -194.75 -2.01 -9.91 16 6 C 0.14 1.93 10.70 85.04 0.91 2.84 16 7 C -0.21 -3.28 5.89 -19.99 -0.12 -3.40 16 8 C 0.56 10.16 7.72 86.79 0.67 10.83 16 9 O -0.56 -13.22 13.50 -3.87 -0.05 -13.27 16 10 N -0.71 -10.08 5.50 -469.70 -2.58 -12.66 16 11 C 0.17 2.64 5.80 85.63 0.50 3.14 16 12 C -0.12 -2.00 5.25 -19.87 -0.10 -2.11 16 13 C -0.09 -1.76 9.70 22.27 0.22 -1.54 16 14 C -0.13 -2.89 9.70 22.27 0.22 -2.68 16 15 C -0.07 -1.83 5.13 -19.87 -0.10 -1.94 16 16 C -0.08 -2.55 5.46 29.85 0.16 -2.39 16 17 C 0.16 6.62 6.24 86.38 0.54 7.16 16 18 N -0.75 -38.89 5.60 -343.45 -1.92 -40.82 16 19 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 23 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C -0.13 -2.90 9.70 22.27 0.22 -2.69 16 28 C -0.10 -1.76 9.70 22.27 0.22 -1.55 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 0.68 8.07 -2.39 -0.02 0.66 16 31 H 0.08 1.39 5.93 -2.39 -0.01 1.38 16 32 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.17 1.65 6.47 -2.91 -0.02 1.63 16 35 H 0.41 4.37 6.57 -92.71 -0.61 3.77 16 36 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 37 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 41 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 42 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.37 20.48 7.67 -92.70 -0.71 19.77 16 45 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 46 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 47 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -72.68 397.09 1.72 -70.96 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.32 Total: 28.51 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 6.31 Total: -11.94 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -6.24 Total: -122.66 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.05 Total: -13.27 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -72.68 1.72 -70.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317371174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.209 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds