Wall clock time and date at job start Tue Mar 31 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38678 * 120.79492 * 2 1 4 4 C 1.38175 * 119.16425 * 180.02562 * 3 2 1 5 5 N 1.31881 * 120.76839 * 0.02562 * 4 3 2 6 6 C 1.31866 * 121.72455 * 359.68870 * 5 4 3 7 7 C 1.38223 * 120.75846 * 0.57986 * 6 5 4 8 8 C 1.50701 * 120.41486 * 179.73036 * 7 6 5 9 9 C 1.50703 * 109.47064 * 264.71864 * 8 7 6 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 9 14 14 C 1.38233 * 120.00099 * 269.72651 * 13 12 11 15 15 C 1.38239 * 119.99655 * 179.76882 * 14 13 12 16 16 C 1.38228 * 120.00132 * 0.48003 * 15 14 13 17 17 C 1.50705 * 120.00130 * 179.77080 * 16 15 14 18 18 N 1.46499 * 109.46818 * 270.02476 * 17 16 15 19 19 C 1.36939 * 119.99690 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99864 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46931 * 89.99730 * 23 21 19 25 25 H 1.48495 * 109.46930 * 209.99950 * 23 21 19 26 26 H 1.48502 * 109.47061 * 330.00039 * 23 21 19 27 27 C 1.38237 * 120.00223 * 359.79707 * 16 15 14 28 28 C 1.38238 * 119.99946 * 359.94921 * 27 16 15 29 29 H 1.08997 * 109.47132 * 269.97876 * 1 2 3 30 30 H 1.09001 * 109.46532 * 29.97476 * 1 2 3 31 31 H 1.08999 * 109.47372 * 149.97376 * 1 2 3 32 32 H 1.07998 * 120.41166 * 359.97438 * 3 2 1 33 33 H 1.07996 * 119.61668 * 180.02562 * 4 3 2 34 34 H 1.07999 * 119.61674 * 180.28427 * 6 5 4 35 35 H 1.09002 * 109.47060 * 144.71900 * 8 7 6 36 36 H 1.09001 * 109.47380 * 24.71813 * 8 7 6 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.08003 * 119.99927 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99208 * 180.25033 * 15 14 13 42 42 H 1.09001 * 109.46742 * 30.02239 * 17 16 15 43 43 H 1.08992 * 109.47420 * 150.02142 * 17 16 15 44 44 H 0.96997 * 120.00409 * 0.02562 * 18 17 16 45 45 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.00143 * 179.97438 * 27 16 15 47 47 H 1.07991 * 120.00062 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1913 0.0000 4 6 3.5982 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5982 -1.1518 0.0040 7 6 2.2166 -1.1909 -0.0009 8 6 1.4908 -2.5116 -0.0006 9 6 1.1393 -2.8920 -1.4158 10 8 1.4482 -2.1626 -2.3343 11 7 0.4816 -4.0426 -1.6609 12 6 0.1404 -4.4126 -3.0367 13 6 -0.5855 -5.7332 -3.0364 14 6 0.1262 -6.9132 -3.1466 15 6 -0.5394 -8.1248 -3.1415 16 6 -1.9174 -8.1559 -3.0362 17 6 -2.6434 -9.4766 -3.0358 18 7 -2.9846 -9.8466 -4.4117 19 6 -3.6519 -11.0161 -4.6607 20 1 -3.9263 -11.6659 -3.8429 21 6 -3.9747 -11.3670 -5.9644 22 7 -3.6398 -10.5754 -6.9611 23 14 -4.8857 -12.9621 -6.3040 24 1 -6.3492 -12.7127 -6.2721 25 1 -4.5002 -13.4769 -7.6424 26 1 -4.5317 -13.9647 -5.2672 27 6 -2.6295 -6.9757 -2.9318 28 6 -1.9636 -5.7643 -2.9316 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6968 2.1377 -0.0004 33 1 4.1584 2.0752 -0.0001 34 1 4.1585 -2.0751 0.0076 35 1 0.5784 -2.4247 0.5895 36 1 2.1323 -3.2787 0.4331 37 1 0.2349 -4.6261 -0.9263 38 1 1.0530 -4.5001 -3.6264 39 1 -0.5005 -3.6453 -3.4709 40 1 1.2024 -6.8886 -3.2333 41 1 0.0170 -9.0468 -3.2235 42 1 -2.0020 -10.2436 -2.6017 43 1 -3.5558 -9.3895 -2.4461 44 1 -2.7371 -9.2635 -5.1463 45 1 -3.8658 -10.8204 -7.8721 46 1 -3.7061 -7.0001 -2.8499 47 1 -2.5199 -4.8424 -2.8496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318995900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:00 Heat of formation + Delta-G solvation = 24.899745 kcal Electronic energy + Delta-G solvation = -26947.360040 eV Core-core repulsion = 23094.672003 eV Total energy + Delta-G solvation = -3852.688037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.94656 -39.82442 -39.04204 -35.64241 -34.73690 -34.36209 -32.91518 -32.10485 -30.76613 -30.33604 -28.98996 -27.97025 -26.67007 -24.42075 -23.20759 -22.53764 -22.48985 -22.07740 -20.70568 -20.43277 -17.62241 -17.30846 -17.17006 -16.85371 -16.48977 -15.76872 -15.55186 -15.22010 -14.97784 -14.89425 -14.59396 -14.46729 -13.83171 -13.64192 -13.42048 -13.36837 -13.25104 -13.23661 -13.18912 -13.02427 -12.88463 -12.37655 -12.33840 -12.04742 -11.88870 -11.75026 -11.11157 -10.89545 -10.77442 -10.63427 -10.30136 -10.09558 -9.81201 -9.77922 -9.74645 -9.34127 -9.30236 -8.93858 -8.73762 -8.48172 -6.98198 -5.79980 -3.10168 0.75273 0.93290 1.35617 1.59278 2.34161 2.97948 3.41186 3.46061 3.48129 3.50875 3.96383 4.04130 4.24301 4.32171 4.45671 4.53371 4.55785 4.58505 4.71507 4.90097 4.93922 4.95316 5.09624 5.12068 5.14154 5.21011 5.28423 5.33302 5.42078 5.53305 5.55599 5.57023 5.69723 5.71311 5.80681 5.97084 6.10590 6.11911 6.12150 6.16636 6.37305 6.44213 6.54092 6.58433 6.64711 7.05644 7.16567 7.22324 7.65437 7.66470 7.93265 8.37574 9.49250 10.04927 10.40556 11.42382 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.037771 B = 0.001536 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.132493 B =18219.132214 C =18363.149529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.025 4.025 3 C -0.174 4.174 4 C 0.099 3.901 5 N -0.489 5.489 6 C 0.115 3.885 7 C -0.119 4.119 8 C -0.100 4.100 9 C 0.512 3.488 10 O -0.532 6.532 11 N -0.724 5.724 12 C 0.166 3.834 13 C -0.125 4.125 14 C -0.103 4.103 15 C -0.106 4.106 16 C -0.063 4.063 17 C 0.184 3.816 18 N -0.727 5.727 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.106 4.106 28 C -0.104 4.104 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.403 0.597 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.124 0.876 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.850 21.975 18.639 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 C -0.194 4.194 4 C -0.057 4.057 5 N -0.198 5.198 6 C -0.042 4.042 7 C -0.121 4.121 8 C -0.141 4.141 9 C 0.297 3.703 10 O -0.408 6.408 11 N -0.377 5.377 12 C 0.044 3.956 13 C -0.126 4.126 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.064 4.064 17 C 0.057 3.943 18 N -0.371 5.371 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.237 0.763 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.142 0.858 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.907 22.346 17.961 31.044 hybrid contribution -1.521 -1.030 -0.333 1.866 sum 10.386 21.316 17.627 29.546 Atomic orbital electron populations 1.20862 0.90360 1.03743 1.02636 1.20147 0.96666 0.92473 0.94048 1.22009 0.95650 0.98532 1.03226 1.22731 0.91789 0.96259 0.94958 1.67685 1.41103 0.98460 1.12526 1.22607 0.90813 0.96380 0.94445 1.20143 0.94952 0.94154 1.02890 1.20611 1.02457 0.95746 0.95248 1.20484 0.77776 0.81002 0.90989 1.90753 1.52866 1.51038 1.46167 1.46157 1.58992 1.22787 1.09716 1.20157 0.99277 0.93370 0.82838 1.19667 0.93925 0.93926 1.05061 1.20993 0.99453 0.91911 0.99828 1.21131 0.94198 0.97824 0.99314 1.20399 0.93795 0.96269 0.95940 1.19711 0.95555 0.89538 0.89502 1.42333 1.69078 1.24602 1.01089 1.19241 1.28811 0.97214 0.92253 0.91047 1.24766 1.01620 0.98834 0.95577 1.69674 1.51781 1.37756 0.98683 0.86168 0.79528 0.83038 0.77304 1.21659 1.21720 1.20704 1.21127 1.00137 0.91707 0.99515 1.20981 0.93434 0.97864 0.99942 0.90349 0.90775 0.91088 0.84819 0.82820 0.82979 0.87575 0.87463 0.76279 0.90741 0.90773 0.86321 0.85786 0.95384 0.95389 0.78052 0.93433 0.85802 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.31 36.01 0.34 -0.39 16 2 C -0.03 -0.21 5.92 -104.32 -0.62 -0.82 16 3 C -0.17 -1.34 9.82 -39.44 -0.39 -1.72 16 4 C 0.10 0.84 11.18 -17.55 -0.20 0.65 16 5 N -0.49 -5.16 10.36 -13.26 -0.14 -5.30 16 6 C 0.11 1.07 10.84 -17.54 -0.19 0.88 16 7 C -0.12 -1.01 4.39 -104.48 -0.46 -1.47 16 8 C -0.10 -0.61 5.18 -29.03 -0.15 -0.76 16 9 C 0.51 4.78 7.15 -10.98 -0.08 4.70 16 10 O -0.53 -7.34 16.03 5.56 0.09 -7.25 16 11 N -0.72 -5.93 5.55 -61.47 -0.34 -6.27 16 12 C 0.17 1.71 5.80 -5.19 -0.03 1.68 16 13 C -0.13 -1.45 5.25 -104.62 -0.55 -2.00 16 14 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 15 C -0.11 -1.57 9.70 -39.58 -0.38 -1.96 16 16 C -0.06 -1.05 5.25 -104.62 -0.55 -1.60 16 17 C 0.18 3.64 6.38 -5.19 -0.03 3.61 16 18 N -0.73 -18.34 5.59 -61.09 -0.34 -18.68 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.11 -1.57 9.70 -39.58 -0.38 -1.95 16 28 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.11 0.43 7.10 -51.93 -0.37 0.06 16 36 H 0.11 0.41 8.06 -51.93 -0.42 -0.01 16 37 H 0.40 2.44 8.46 -40.82 -0.35 2.10 16 38 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 44 H 0.39 10.42 7.66 -40.82 -0.31 10.10 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 46 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 47 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -34.96 401.00 -10.48 -45.44 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.80 Total: 8.12 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -4.69 Total: -11.85 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.10 Total: -57.67 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.96 -10.48 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318995900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.336 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds