Wall clock time and date at job start Tue Mar 31 2020 22:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38678 * 120.79492 * 2 1 4 4 C 1.38175 * 119.16425 * 180.02562 * 3 2 1 5 5 N 1.31881 * 120.76839 * 0.02562 * 4 3 2 6 6 C 1.31866 * 121.72455 * 359.68870 * 5 4 3 7 7 C 1.38223 * 120.75846 * 0.57986 * 6 5 4 8 8 C 1.50701 * 120.41486 * 179.73036 * 7 6 5 9 9 C 1.50703 * 109.47064 * 264.71864 * 8 7 6 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 9 14 14 C 1.38233 * 120.00099 * 269.72651 * 13 12 11 15 15 C 1.38239 * 119.99655 * 179.76882 * 14 13 12 16 16 C 1.38228 * 120.00132 * 0.48003 * 15 14 13 17 17 C 1.50705 * 120.00130 * 179.77080 * 16 15 14 18 18 N 1.46499 * 109.46818 * 270.02476 * 17 16 15 19 19 C 1.36939 * 119.99690 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99864 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46931 * 89.99730 * 23 21 19 25 25 H 1.48495 * 109.46930 * 209.99950 * 23 21 19 26 26 H 1.48502 * 109.47061 * 330.00039 * 23 21 19 27 27 C 1.38237 * 120.00223 * 359.79707 * 16 15 14 28 28 C 1.38238 * 119.99946 * 359.94921 * 27 16 15 29 29 H 1.08997 * 109.47132 * 269.97876 * 1 2 3 30 30 H 1.09001 * 109.46532 * 29.97476 * 1 2 3 31 31 H 1.08999 * 109.47372 * 149.97376 * 1 2 3 32 32 H 1.07998 * 120.41166 * 359.97438 * 3 2 1 33 33 H 1.07996 * 119.61668 * 180.02562 * 4 3 2 34 34 H 1.07999 * 119.61674 * 180.28427 * 6 5 4 35 35 H 1.09002 * 109.47060 * 144.71900 * 8 7 6 36 36 H 1.09001 * 109.47380 * 24.71813 * 8 7 6 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.08003 * 119.99927 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99208 * 180.25033 * 15 14 13 42 42 H 1.09001 * 109.46742 * 30.02239 * 17 16 15 43 43 H 1.08992 * 109.47420 * 150.02142 * 17 16 15 44 44 H 0.96997 * 120.00409 * 0.02562 * 18 17 16 45 45 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.00143 * 179.97438 * 27 16 15 47 47 H 1.07991 * 120.00062 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1913 0.0000 4 6 3.5982 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5982 -1.1518 0.0040 7 6 2.2166 -1.1909 -0.0009 8 6 1.4908 -2.5116 -0.0006 9 6 1.1393 -2.8920 -1.4158 10 8 1.4482 -2.1626 -2.3343 11 7 0.4816 -4.0426 -1.6609 12 6 0.1404 -4.4126 -3.0367 13 6 -0.5855 -5.7332 -3.0364 14 6 0.1262 -6.9132 -3.1466 15 6 -0.5394 -8.1248 -3.1415 16 6 -1.9174 -8.1559 -3.0362 17 6 -2.6434 -9.4766 -3.0358 18 7 -2.9846 -9.8466 -4.4117 19 6 -3.6519 -11.0161 -4.6607 20 1 -3.9263 -11.6659 -3.8429 21 6 -3.9747 -11.3670 -5.9644 22 7 -3.6398 -10.5754 -6.9611 23 14 -4.8857 -12.9621 -6.3040 24 1 -6.3492 -12.7127 -6.2721 25 1 -4.5002 -13.4769 -7.6424 26 1 -4.5317 -13.9647 -5.2672 27 6 -2.6295 -6.9757 -2.9318 28 6 -1.9636 -5.7643 -2.9316 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6968 2.1377 -0.0004 33 1 4.1584 2.0752 -0.0001 34 1 4.1585 -2.0751 0.0076 35 1 0.5784 -2.4247 0.5895 36 1 2.1323 -3.2787 0.4331 37 1 0.2349 -4.6261 -0.9263 38 1 1.0530 -4.5001 -3.6264 39 1 -0.5005 -3.6453 -3.4709 40 1 1.2024 -6.8886 -3.2333 41 1 0.0170 -9.0468 -3.2235 42 1 -2.0020 -10.2436 -2.6017 43 1 -3.5558 -9.3895 -2.4461 44 1 -2.7371 -9.2635 -5.1463 45 1 -3.8658 -10.8204 -7.8721 46 1 -3.7061 -7.0001 -2.8499 47 1 -2.5199 -4.8424 -2.8496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318995900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:58 Heat of formation + Delta-G solvation = 2.660030 kcal Electronic energy + Delta-G solvation = -26948.324426 eV Core-core repulsion = 23094.672003 eV Total energy + Delta-G solvation = -3853.652424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57342 -40.69691 -39.99305 -36.95006 -35.76662 -35.31468 -33.79207 -33.38329 -31.84059 -31.83428 -29.70356 -28.70007 -27.80075 -25.90006 -24.21747 -23.68507 -23.61507 -22.76986 -21.68476 -21.31729 -19.33052 -18.33703 -17.76281 -17.51511 -17.21821 -16.85883 -16.71525 -16.40285 -15.92691 -15.89077 -15.78214 -15.24852 -15.20849 -14.90339 -14.45692 -14.33054 -14.25302 -14.18724 -13.73487 -13.72721 -13.64783 -13.53527 -13.36760 -13.08533 -12.98320 -12.81162 -12.75689 -12.27773 -12.18677 -11.95640 -11.89958 -11.73040 -11.11376 -10.98764 -10.40191 -10.32322 -10.11439 -9.91757 -9.80818 -9.60771 -9.03681 -7.96287 -5.26628 0.14090 0.28035 0.34834 0.51618 1.47623 1.49440 1.58055 1.64642 2.23611 2.55388 2.83620 2.97084 3.37101 3.50957 3.66459 3.70457 3.82795 3.90361 3.94094 4.03797 4.04716 4.07916 4.15308 4.24516 4.29654 4.49070 4.51230 4.57578 4.61572 4.69442 4.70991 4.74442 4.75755 4.90312 4.90618 4.91282 5.06665 5.08558 5.19902 5.20929 5.38137 5.42320 5.47022 5.47651 5.61008 5.82338 5.82449 6.07404 6.24381 6.56842 7.05531 7.26011 7.31174 8.04395 8.29165 9.26914 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.037771 B = 0.001536 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.132493 B =18219.132214 C =18363.149529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 C -0.179 4.179 4 C 0.084 3.916 5 N -0.522 5.522 6 C 0.095 3.905 7 C -0.128 4.128 8 C -0.093 4.093 9 C 0.515 3.485 10 O -0.580 6.580 11 N -0.712 5.712 12 C 0.172 3.828 13 C -0.108 4.108 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.087 4.087 17 C 0.185 3.815 18 N -0.739 5.739 19 C -0.249 4.249 20 H 0.079 0.921 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.976 3.024 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.268 1.268 27 C -0.116 4.116 28 C -0.097 4.097 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.157 0.843 33 H 0.174 0.826 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.416 0.584 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.030 0.970 43 H 0.031 0.969 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.122 0.878 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 22.660 20.339 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.199 4.199 4 C -0.072 4.072 5 N -0.231 5.231 6 C -0.062 4.062 7 C -0.131 4.131 8 C -0.133 4.133 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.365 5.365 12 C 0.049 3.951 13 C -0.109 4.109 14 C -0.117 4.117 15 C -0.135 4.135 16 C -0.088 4.088 17 C 0.059 3.941 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.097 0.903 21 C -0.266 4.266 22 N -0.620 5.620 23 Si 0.805 3.195 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.134 4.134 28 C -0.115 4.115 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.140 0.860 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.663 23.005 19.741 32.480 hybrid contribution -1.393 -1.133 -0.785 1.960 sum 10.270 21.871 18.956 30.711 Atomic orbital electron populations 1.20893 0.88892 1.03624 1.03896 1.20544 0.97911 0.92652 0.93611 1.22318 0.95493 0.99597 1.02458 1.23145 0.92654 0.96526 0.94895 1.67665 1.42257 0.99402 1.13769 1.22915 0.91691 0.96629 0.94960 1.20380 0.94778 0.95362 1.02554 1.20668 1.03935 0.95330 0.93340 1.20976 0.76699 0.80346 0.91749 1.90742 1.54825 1.52522 1.47875 1.45998 1.58449 1.22776 1.09279 1.19994 0.98790 0.92327 0.83998 1.19783 0.93695 0.94256 1.03138 1.21191 1.00575 0.91167 0.98750 1.21170 0.93628 0.98821 0.99855 1.20165 0.94476 0.95190 0.98964 1.19776 0.95974 0.91629 0.86716 1.42541 1.68900 1.23816 1.02939 1.19682 1.27915 0.97943 0.92550 0.90323 1.25609 1.03223 1.02309 0.95504 1.69837 1.53650 1.39721 0.98762 0.85100 0.78113 0.79351 0.76936 1.21289 1.22237 1.19236 1.21179 1.00179 0.92081 0.99992 1.21191 0.93837 0.97802 0.98706 0.88280 0.90396 0.91688 0.82538 0.80926 0.81909 0.84939 0.84818 0.74680 0.91260 0.90999 0.84148 0.86147 0.95196 0.95106 0.79536 0.93986 0.86040 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.31 71.24 0.66 -0.49 16 2 C -0.04 -0.58 5.92 -19.67 -0.12 -0.69 16 3 C -0.18 -2.52 9.82 22.36 0.22 -2.30 16 4 C 0.08 1.38 11.18 84.67 0.95 2.33 16 5 N -0.52 -10.95 10.36 -195.85 -2.03 -12.98 16 6 C 0.09 1.72 10.84 84.68 0.92 2.64 16 7 C -0.13 -1.98 4.39 -19.77 -0.09 -2.07 16 8 C -0.09 -0.88 5.18 29.10 0.15 -0.73 16 9 C 0.51 8.49 7.15 87.66 0.63 9.11 16 10 O -0.58 -15.38 16.03 -3.02 -0.05 -15.42 16 11 N -0.71 -9.69 5.55 -466.78 -2.59 -12.28 16 12 C 0.17 3.13 5.80 85.63 0.50 3.63 16 13 C -0.11 -2.24 5.25 -19.86 -0.10 -2.35 16 14 C -0.10 -2.26 9.70 22.27 0.22 -2.04 16 15 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 16 C -0.09 -2.87 5.25 -19.87 -0.10 -2.97 16 17 C 0.18 7.38 6.38 85.63 0.55 7.93 16 18 N -0.74 -37.91 5.59 -347.18 -1.94 -39.85 16 19 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 22 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 23 Si 0.98 45.88 29.55 68.60 2.03 47.90 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C -0.12 -3.31 9.70 22.27 0.22 -3.10 16 28 C -0.10 -2.18 9.70 22.27 0.22 -1.96 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.06 0.73 6.36 -2.39 -0.02 0.71 16 32 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.13 0.58 7.10 -2.39 -0.02 0.56 16 36 H 0.13 0.58 8.06 -2.39 -0.02 0.56 16 37 H 0.42 3.59 8.46 -92.71 -0.78 2.80 16 38 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 39 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 40 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 42 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 43 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 44 H 0.37 20.67 7.66 -92.71 -0.71 19.96 16 45 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 46 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 47 H 0.14 2.51 8.06 -2.92 -0.02 2.49 16 Total: -1.00 -76.90 401.00 1.53 -75.37 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.50 Total: 29.78 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 6.33 Total: -13.11 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -6.28 Total: -124.52 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.05 Total: -15.42 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.90 1.53 -75.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318995900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.029 kcal (2) G-P(sol) polarization free energy of solvation -76.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds