Wall clock time and date at job start Tue Mar 31 2020 22:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38151 * 119.55327 * 2 1 4 4 C 1.39817 * 119.00281 * 180.02562 * 3 2 1 5 5 C 1.48154 * 120.91994 * 179.97438 * 4 3 2 6 6 O 1.21517 * 120.00135 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99763 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.38233 * 120.00099 * 269.72651 * 9 8 7 11 11 C 1.38239 * 119.99655 * 179.76882 * 10 9 8 12 12 C 1.38228 * 120.00132 * 0.48003 * 11 10 9 13 13 C 1.50705 * 120.00130 * 179.77080 * 12 11 10 14 14 N 1.46499 * 109.46818 * 270.02476 * 13 12 11 15 15 C 1.36939 * 119.99690 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99958 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99864 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00164 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99867 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47015 * 59.99903 * 19 17 15 21 21 H 1.48497 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47029 * 299.99999 * 19 17 15 23 23 C 1.38237 * 120.00223 * 359.79707 * 12 11 10 24 24 C 1.38238 * 119.99946 * 359.94921 * 23 12 11 25 25 C 1.39810 * 118.15380 * 0.25039 * 4 3 2 26 26 C 1.38152 * 119.00371 * 359.52789 * 25 4 3 27 27 C 1.50695 * 119.55128 * 180.22845 * 26 25 4 28 28 N 1.31808 * 119.55283 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47138 * 89.99476 * 1 2 3 30 30 H 1.08995 * 109.47249 * 209.99644 * 1 2 3 31 31 H 1.09000 * 109.47091 * 329.99748 * 1 2 3 32 32 H 1.08002 * 120.49938 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99708 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 35 35 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 36 36 H 1.08003 * 119.99927 * 359.97438 * 10 9 8 37 37 H 1.08001 * 119.99208 * 180.25033 * 11 10 9 38 38 H 1.09001 * 109.46742 * 30.02239 * 13 12 11 39 39 H 1.08992 * 109.47420 * 150.02142 * 13 12 11 40 40 H 0.96997 * 120.00409 * 0.02562 * 14 13 12 41 41 H 0.97001 * 119.99976 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.00143 * 179.97438 * 23 12 11 43 43 H 1.07991 * 120.00062 * 180.02562 * 24 23 12 44 44 H 1.08005 * 120.49581 * 179.72578 * 25 4 3 45 45 H 1.09003 * 109.47434 * 270.25258 * 27 26 25 46 46 H 1.08998 * 109.47634 * 30.25348 * 27 26 25 47 47 H 1.09000 * 109.47155 * 150.25407 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1883 -0.0005 5 6 4.3600 2.4520 -0.0011 6 8 3.7796 3.5196 -0.0007 7 7 5.7073 2.4173 -0.0022 8 6 6.4721 3.6668 -0.0022 9 6 7.9462 3.3534 -0.0028 10 6 8.6239 3.2150 1.1940 11 6 9.9751 2.9229 1.1933 12 6 10.6505 2.7789 -0.0041 13 6 12.1246 2.4655 -0.0048 14 7 12.8895 3.7150 -0.0048 15 6 14.2584 3.6798 -0.0049 16 1 14.7741 2.7309 -0.0045 17 6 14.9831 4.8637 -0.0044 18 7 14.3546 6.0201 -0.0043 19 14 16.8506 4.8156 -0.0052 20 1 17.3269 4.1039 -1.2183 21 1 17.3815 6.2024 -0.0050 22 1 17.3279 4.1022 1.2066 23 6 9.9740 2.9230 -1.2010 24 6 8.6218 3.2100 -1.2004 25 6 4.2343 -0.0506 -0.0065 26 6 3.4740 -1.2041 -0.0015 27 6 4.1595 -2.5461 -0.0026 28 7 2.1571 -1.1466 -0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6493 2.1376 0.0004 33 1 6.1705 1.5651 -0.0022 34 1 6.2242 4.2446 0.8882 35 1 6.2229 4.2453 -0.8918 36 1 8.0971 3.3319 2.1295 37 1 10.5037 2.8108 2.1285 38 1 12.3735 1.8872 0.8850 39 1 12.3728 1.8876 -0.8949 40 1 12.4263 4.5672 -0.0040 41 1 14.8611 6.8474 -0.0043 42 1 10.5018 2.8109 -2.1365 43 1 8.0932 3.3221 -2.1354 44 1 5.3130 -0.1051 -0.0115 45 1 4.3244 -2.8691 -1.0305 46 1 5.1175 -2.4652 0.5109 47 1 3.5324 -3.2748 0.5110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318996090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:49 Heat of formation + Delta-G solvation = 25.867190 kcal Electronic energy + Delta-G solvation = -26949.711458 eV Core-core repulsion = 23097.065372 eV Total energy + Delta-G solvation = -3852.646086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13928 -39.79337 -39.02744 -35.69964 -34.55914 -34.11291 -33.38325 -32.03925 -30.78331 -30.20894 -29.54774 -27.48739 -26.99319 -24.98167 -23.75127 -22.55540 -22.45381 -22.23138 -20.73152 -20.43814 -18.12894 -17.36026 -17.26459 -16.23152 -15.90972 -15.90420 -15.57337 -15.31673 -15.05486 -14.77362 -14.67478 -14.55991 -14.00187 -13.70377 -13.55999 -13.42163 -13.28504 -13.21118 -12.99511 -12.85371 -12.56787 -12.40175 -12.34001 -12.13440 -12.10640 -11.89494 -11.12366 -10.89495 -10.77456 -10.70000 -10.59992 -10.27317 -10.12652 -9.91796 -9.80673 -9.42685 -9.26295 -8.93607 -8.75415 -8.51469 -6.98577 -5.80000 -3.10294 0.29081 0.60006 1.31294 1.57698 2.49814 2.81225 3.35259 3.41644 3.45890 3.47256 3.68236 3.90557 4.08853 4.20976 4.49852 4.56448 4.57906 4.59262 4.86855 4.88268 5.00285 5.05812 5.12507 5.12983 5.16658 5.19192 5.25659 5.31945 5.45831 5.48720 5.52914 5.57242 5.63618 5.65905 5.68913 5.78567 5.99963 6.09535 6.10884 6.14915 6.18444 6.43104 6.53407 6.56588 6.62383 7.04383 7.09087 7.15911 7.50259 7.64800 7.76963 8.37520 9.49112 10.04643 10.40305 11.42262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.001701 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.562289 B =16458.377754 C =17233.540297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.130 3.870 3 C -0.123 4.123 4 C -0.078 4.078 5 C 0.556 3.444 6 O -0.529 6.529 7 N -0.714 5.714 8 C 0.166 3.834 9 C -0.128 4.128 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.062 4.062 13 C 0.184 3.816 14 N -0.726 5.726 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.106 4.106 24 C -0.103 4.103 25 C -0.149 4.149 26 C 0.132 3.868 27 C -0.106 4.106 28 N -0.472 5.472 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.403 0.597 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.499 -14.708 -0.016 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.008 4.008 3 C -0.144 4.144 4 C -0.089 4.089 5 C 0.342 3.658 6 O -0.406 6.406 7 N -0.366 5.366 8 C 0.043 3.957 9 C -0.128 4.128 10 C -0.121 4.121 11 C -0.125 4.125 12 C -0.063 4.063 13 C 0.057 3.943 14 N -0.371 5.371 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.169 4.169 26 C -0.006 4.006 27 C -0.163 4.163 28 N -0.183 5.183 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.166 0.834 33 H 0.238 0.762 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.157 0.843 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.178 -14.715 -0.015 30.906 hybrid contribution 1.794 0.845 -0.022 1.983 sum -25.384 -13.870 -0.036 28.926 Atomic orbital electron populations 1.20747 0.88139 1.03833 1.03447 1.21298 0.97309 0.87616 0.94558 1.22099 0.93213 1.00141 0.98931 1.20361 0.94521 0.93356 1.00640 1.18184 0.82223 0.88430 0.76924 1.90795 1.69874 1.30716 1.49245 1.46056 1.05565 1.10499 1.74488 1.20231 0.86758 0.85376 1.03301 1.19645 0.94265 1.04992 0.93923 1.20999 0.94583 0.99478 0.97054 1.21132 0.93809 0.99259 0.98271 1.20412 0.96949 0.96138 0.92781 1.19713 0.84970 0.90854 0.98779 1.42322 1.03094 1.02092 1.89575 1.19195 0.82350 0.92650 1.43420 0.91096 1.24765 0.98028 0.95236 1.02728 1.69663 1.34434 0.96586 1.57219 0.86241 0.85358 0.76523 0.77874 1.21207 1.21637 1.21202 1.21133 0.93788 0.99268 0.98277 1.20998 0.94579 0.99500 0.97047 1.22150 1.01367 0.92071 1.01362 1.21255 0.89147 0.95783 0.94408 1.20762 0.99991 0.92054 1.03509 1.67244 1.09672 1.29611 1.11817 0.90073 0.90183 0.90317 0.83443 0.76159 0.90356 0.90349 0.86277 0.85738 0.95375 0.95368 0.78046 0.93377 0.85738 0.86282 0.84274 0.90025 0.90278 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.17 36.01 0.37 -0.21 16 2 C 0.13 1.11 6.78 -82.63 -0.56 0.55 16 3 C -0.12 -1.13 9.31 -39.02 -0.36 -1.49 16 4 C -0.08 -0.74 5.91 -104.65 -0.62 -1.36 16 5 C 0.56 6.14 7.80 -12.19 -0.10 6.05 16 6 O -0.53 -7.58 16.45 5.35 0.09 -7.49 16 7 N -0.71 -6.66 5.51 -62.33 -0.34 -7.01 16 8 C 0.17 1.74 5.80 -5.19 -0.03 1.71 16 9 C -0.13 -1.49 5.25 -104.62 -0.55 -2.04 16 10 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 11 C -0.11 -1.57 9.70 -39.58 -0.38 -1.95 16 12 C -0.06 -1.02 5.25 -104.62 -0.55 -1.57 16 13 C 0.18 3.63 6.38 -5.19 -0.03 3.60 16 14 N -0.73 -18.30 5.59 -61.09 -0.34 -18.64 16 15 C -0.25 -6.81 9.99 -15.06 -0.15 -6.96 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 19 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.11 -1.57 9.70 -39.58 -0.38 -1.95 16 24 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 25 C -0.15 -1.16 9.24 -39.03 -0.36 -1.52 16 26 C 0.13 1.07 6.78 -82.63 -0.56 0.51 16 27 C -0.11 -0.57 10.16 36.00 0.37 -0.20 16 28 N -0.47 -4.46 10.16 -5.79 -0.06 -4.52 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.15 1.26 7.74 -52.49 -0.41 0.85 16 33 H 0.40 2.98 6.61 -40.82 -0.27 2.71 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.43 16 35 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.39 10.40 7.66 -40.82 -0.31 10.08 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.14 0.74 6.54 -52.48 -0.34 0.40 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -33.66 402.74 -10.43 -44.09 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.78 Total: 8.30 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -4.77 Total: -10.57 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.02 Total: -57.56 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.49 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.66 -10.43 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318996090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.956 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds