Wall clock time and date at job start Tue Mar 31 2020 22:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38151 * 119.55327 * 2 1 4 4 C 1.39817 * 119.00281 * 180.02562 * 3 2 1 5 5 C 1.48154 * 120.91994 * 179.97438 * 4 3 2 6 6 O 1.21517 * 120.00135 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99763 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.38233 * 120.00099 * 269.72651 * 9 8 7 11 11 C 1.38239 * 119.99655 * 179.76882 * 10 9 8 12 12 C 1.38228 * 120.00132 * 0.48003 * 11 10 9 13 13 C 1.50705 * 120.00130 * 179.77080 * 12 11 10 14 14 N 1.46499 * 109.46818 * 270.02476 * 13 12 11 15 15 C 1.36939 * 119.99690 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99958 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99864 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00164 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99867 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47015 * 59.99903 * 19 17 15 21 21 H 1.48497 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47029 * 299.99999 * 19 17 15 23 23 C 1.38237 * 120.00223 * 359.79707 * 12 11 10 24 24 C 1.38238 * 119.99946 * 359.94921 * 23 12 11 25 25 C 1.39810 * 118.15380 * 0.25039 * 4 3 2 26 26 C 1.38152 * 119.00371 * 359.52789 * 25 4 3 27 27 C 1.50695 * 119.55128 * 180.22845 * 26 25 4 28 28 N 1.31808 * 119.55283 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47138 * 89.99476 * 1 2 3 30 30 H 1.08995 * 109.47249 * 209.99644 * 1 2 3 31 31 H 1.09000 * 109.47091 * 329.99748 * 1 2 3 32 32 H 1.08002 * 120.49938 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99708 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 35 35 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 36 36 H 1.08003 * 119.99927 * 359.97438 * 10 9 8 37 37 H 1.08001 * 119.99208 * 180.25033 * 11 10 9 38 38 H 1.09001 * 109.46742 * 30.02239 * 13 12 11 39 39 H 1.08992 * 109.47420 * 150.02142 * 13 12 11 40 40 H 0.96997 * 120.00409 * 0.02562 * 14 13 12 41 41 H 0.97001 * 119.99976 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.00143 * 179.97438 * 23 12 11 43 43 H 1.07991 * 120.00062 * 180.02562 * 24 23 12 44 44 H 1.08005 * 120.49581 * 179.72578 * 25 4 3 45 45 H 1.09003 * 109.47434 * 270.25258 * 27 26 25 46 46 H 1.08998 * 109.47634 * 30.25348 * 27 26 25 47 47 H 1.09000 * 109.47155 * 150.25407 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1883 -0.0005 5 6 4.3600 2.4520 -0.0011 6 8 3.7796 3.5196 -0.0007 7 7 5.7073 2.4173 -0.0022 8 6 6.4721 3.6668 -0.0022 9 6 7.9462 3.3534 -0.0028 10 6 8.6239 3.2150 1.1940 11 6 9.9751 2.9229 1.1933 12 6 10.6505 2.7789 -0.0041 13 6 12.1246 2.4655 -0.0048 14 7 12.8895 3.7150 -0.0048 15 6 14.2584 3.6798 -0.0049 16 1 14.7741 2.7309 -0.0045 17 6 14.9831 4.8637 -0.0044 18 7 14.3546 6.0201 -0.0043 19 14 16.8506 4.8156 -0.0052 20 1 17.3269 4.1039 -1.2183 21 1 17.3815 6.2024 -0.0050 22 1 17.3279 4.1022 1.2066 23 6 9.9740 2.9230 -1.2010 24 6 8.6218 3.2100 -1.2004 25 6 4.2343 -0.0506 -0.0065 26 6 3.4740 -1.2041 -0.0015 27 6 4.1595 -2.5461 -0.0026 28 7 2.1571 -1.1466 -0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6493 2.1376 0.0004 33 1 6.1705 1.5651 -0.0022 34 1 6.2242 4.2446 0.8882 35 1 6.2229 4.2453 -0.8918 36 1 8.0971 3.3319 2.1295 37 1 10.5037 2.8108 2.1285 38 1 12.3735 1.8872 0.8850 39 1 12.3728 1.8876 -0.8949 40 1 12.4263 4.5672 -0.0040 41 1 14.8611 6.8474 -0.0043 42 1 10.5018 2.8109 -2.1365 43 1 8.0932 3.3221 -2.1354 44 1 5.3130 -0.1051 -0.0115 45 1 4.3244 -2.8691 -1.0305 46 1 5.1175 -2.4652 0.5109 47 1 3.5324 -3.2748 0.5110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318996090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:48 Heat of formation + Delta-G solvation = 5.237029 kcal Electronic energy + Delta-G solvation = -26950.606048 eV Core-core repulsion = 23097.065372 eV Total energy + Delta-G solvation = -3853.540677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83338 -40.70962 -40.01547 -36.99375 -35.92340 -34.74601 -34.20506 -33.54265 -31.85910 -31.74736 -30.01901 -28.66027 -27.66285 -26.34270 -24.91601 -23.89155 -23.63438 -22.87458 -21.73809 -21.40281 -19.32924 -18.87205 -18.02891 -17.11367 -16.85183 -16.78482 -16.64217 -16.38157 -16.16287 -15.99853 -15.56482 -15.49857 -15.25035 -14.93925 -14.67319 -14.34545 -14.15405 -14.13108 -14.07401 -13.71354 -13.46370 -13.26842 -13.12505 -12.99988 -12.94606 -12.81278 -12.72923 -12.69168 -12.24662 -11.96642 -11.91868 -11.75097 -11.53331 -10.97569 -10.97424 -10.58170 -10.26345 -9.83982 -9.82613 -9.66659 -9.03520 -7.95915 -5.26301 -0.40135 -0.00345 0.21901 0.50004 1.47737 1.50854 1.57140 1.71477 1.97169 2.55123 2.70071 2.84996 3.17204 3.37257 3.40919 3.57106 3.66928 3.88493 3.90292 3.97978 4.03905 4.13054 4.24537 4.26946 4.32659 4.46871 4.52719 4.55830 4.65633 4.68447 4.73600 4.75223 4.81658 4.89570 4.89814 4.95025 5.03398 5.06432 5.14313 5.18719 5.19400 5.23385 5.44990 5.47321 5.58139 5.62319 5.81127 6.05175 6.24542 6.32728 6.89515 6.96671 7.31433 8.04626 8.29398 9.27009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.001701 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.562289 B =16458.377754 C =17233.540297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.091 4.091 5 C 0.559 3.441 6 O -0.567 6.567 7 N -0.702 5.702 8 C 0.170 3.830 9 C -0.111 4.111 10 C -0.097 4.097 11 C -0.115 4.115 12 C -0.085 4.085 13 C 0.185 3.815 14 N -0.739 5.739 15 C -0.251 4.251 16 H 0.079 0.921 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.977 3.023 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.276 1.276 23 C -0.115 4.115 24 C -0.097 4.097 25 C -0.144 4.144 26 C 0.122 3.878 27 C -0.104 4.104 28 N -0.492 5.492 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.414 0.586 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.164 0.836 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.136 -16.129 -0.033 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.015 4.015 3 C -0.156 4.156 4 C -0.102 4.102 5 C 0.346 3.654 6 O -0.447 6.447 7 N -0.354 5.354 8 C 0.048 3.952 9 C -0.112 4.112 10 C -0.115 4.115 11 C -0.134 4.134 12 C -0.086 4.086 13 C 0.059 3.941 14 N -0.382 5.382 15 C -0.382 4.382 16 H 0.097 0.903 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.805 3.195 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.202 1.202 23 C -0.134 4.134 24 C -0.115 4.115 25 C -0.164 4.164 26 C -0.015 4.015 27 C -0.161 4.161 28 N -0.204 5.204 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.165 0.835 33 H 0.252 0.748 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.140 0.860 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.182 0.818 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.811 -16.214 -0.031 32.192 hybrid contribution 1.881 1.198 -0.018 2.230 sum -25.930 -15.016 -0.050 29.964 Atomic orbital electron populations 1.20824 0.86359 1.04572 1.04261 1.21696 0.98610 0.87210 0.93985 1.22205 0.93414 1.00459 0.99525 1.20342 0.94676 0.93297 1.01884 1.18378 0.82479 0.88412 0.76107 1.90776 1.70616 1.32111 1.51202 1.45895 1.05078 1.10727 1.73659 1.20144 0.85775 0.85807 1.03501 1.19742 0.94767 1.03270 0.93421 1.21203 0.93621 0.98268 0.98398 1.21174 0.94888 0.99775 0.97555 1.20177 0.95203 0.98924 0.94268 1.19778 0.86938 0.88746 0.98648 1.42527 1.02760 1.03389 1.89502 1.19645 0.83857 0.92937 1.41795 0.90342 1.25608 1.02633 0.94960 1.03400 1.69829 1.35925 0.97011 1.59152 0.85172 0.79885 0.76155 0.78286 1.20252 1.22209 1.20239 1.21176 0.94870 0.99787 0.97562 1.21201 0.93614 0.98284 0.98388 1.22375 1.02574 0.91158 1.00338 1.21763 0.89009 0.97093 0.93654 1.20849 1.00494 0.90479 1.04325 1.67325 1.10540 1.30025 1.12464 0.89127 0.89991 0.89014 0.83517 0.74802 0.90265 0.90258 0.83999 0.86006 0.95128 0.95119 0.79515 0.93979 0.86005 0.84000 0.81814 0.89099 0.88462 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.17 71.24 0.72 -0.31 16 2 C 0.12 2.00 6.78 42.54 0.29 2.29 16 3 C -0.14 -2.40 9.31 22.63 0.21 -2.19 16 4 C -0.09 -1.63 5.91 -19.88 -0.12 -1.74 16 5 C 0.56 11.59 7.80 86.88 0.68 12.27 16 6 O -0.57 -15.89 16.45 -3.77 -0.06 -15.95 16 7 N -0.70 -11.45 5.51 -469.40 -2.58 -14.03 16 8 C 0.17 3.16 5.80 85.63 0.50 3.66 16 9 C -0.11 -2.32 5.25 -19.86 -0.10 -2.43 16 10 C -0.10 -2.19 9.70 22.27 0.22 -1.97 16 11 C -0.12 -3.30 9.70 22.27 0.22 -3.08 16 12 C -0.09 -2.77 5.25 -19.87 -0.10 -2.88 16 13 C 0.18 7.33 6.38 85.63 0.55 7.88 16 14 N -0.74 -37.74 5.59 -347.18 -1.94 -39.68 16 15 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 17 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 18 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 19 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 C -0.12 -3.30 9.70 22.27 0.22 -3.08 16 24 C -0.10 -2.19 9.70 22.27 0.22 -1.97 16 25 C -0.14 -1.95 9.24 22.63 0.21 -1.74 16 26 C 0.12 1.79 6.78 42.54 0.29 2.08 16 27 C -0.10 -0.89 10.16 71.23 0.72 -0.16 16 28 N -0.49 -8.77 10.16 -172.23 -1.75 -10.51 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.15 2.52 7.74 -2.91 -0.02 2.49 16 33 H 0.41 4.87 6.61 -92.71 -0.61 4.26 16 34 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.37 20.59 7.66 -92.71 -0.71 19.88 16 41 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.14 2.57 8.06 -2.92 -0.02 2.55 16 44 H 0.16 1.23 6.54 -2.91 -0.02 1.22 16 45 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.10 0.46 8.08 -2.39 -0.02 0.44 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -72.87 402.74 1.66 -71.21 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.32 Total: 30.68 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 6.01 Total: -10.29 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -5.99 Total: -123.45 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.06 Total: -15.95 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -72.87 1.66 -71.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318996090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.451 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds