Wall clock time and date at job start Tue Mar 31 2020 22:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38628 * 120.32551 * 2 1 4 4 C 1.38585 * 118.49129 * 179.97438 * 3 2 1 5 5 C 1.39308 * 119.05882 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72659 * 180.27364 * 5 4 3 7 7 O 1.21513 * 119.99941 * 359.72405 * 6 5 4 8 8 N 1.34774 * 120.00515 * 179.72574 * 6 5 4 9 9 C 1.46498 * 120.00606 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47481 * 179.97438 * 9 8 6 11 11 C 1.38230 * 120.00121 * 269.72631 * 10 9 8 12 12 C 1.38237 * 119.99507 * 179.76282 * 11 10 9 13 13 C 1.38232 * 120.00484 * 0.49164 * 12 11 10 14 14 C 1.50698 * 120.00385 * 179.76274 * 13 12 11 15 15 N 1.46498 * 109.47484 * 270.02062 * 14 13 12 16 16 C 1.36928 * 120.00168 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00315 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99424 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00231 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47125 * 60.00214 * 20 18 16 22 22 H 1.48501 * 109.46998 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47022 * 300.00025 * 20 18 16 24 24 C 1.38238 * 119.99686 * 359.78660 * 13 12 11 25 25 C 1.38235 * 119.99388 * 90.00145 * 10 9 8 26 26 N 1.32724 * 120.55261 * 359.97438 * 5 4 3 27 27 C 1.31523 * 121.64361 * 0.02562 * 26 5 4 28 28 C 1.50692 * 119.54677 * 179.97438 * 27 26 5 29 29 H 1.09001 * 109.46761 * 270.02348 * 1 2 3 30 30 H 1.09001 * 109.46924 * 30.01600 * 1 2 3 31 31 H 1.08992 * 109.47415 * 150.02308 * 1 2 3 32 32 H 1.08003 * 120.75632 * 359.95864 * 3 2 1 33 33 H 1.07994 * 120.47614 * 180.02562 * 4 3 2 34 34 H 0.97008 * 120.00030 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46725 * 300.00301 * 9 8 6 36 36 H 1.09010 * 109.46705 * 59.99430 * 9 8 6 37 37 H 1.07998 * 120.00409 * 0.02562 * 11 10 9 38 38 H 1.08006 * 119.99543 * 180.24886 * 12 11 10 39 39 H 1.09005 * 109.47023 * 30.02320 * 14 13 12 40 40 H 1.08997 * 109.47008 * 150.01848 * 14 13 12 41 41 H 0.96998 * 119.99372 * 0.02562 * 15 14 13 42 42 H 0.97006 * 119.99514 * 180.02562 * 19 18 16 43 43 H 1.07997 * 119.99860 * 179.97438 * 24 13 12 44 44 H 1.07996 * 120.00388 * 359.97438 * 25 10 9 45 45 H 1.09006 * 109.47049 * 90.00568 * 28 27 26 46 46 H 1.09007 * 109.47244 * 209.99998 * 28 27 26 47 47 H 1.08995 * 109.47479 * 330.00108 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1522 0.0005 5 6 4.2294 -0.0865 0.0005 6 6 5.7096 -0.1512 0.0072 7 8 6.3626 0.8736 0.0077 8 7 6.3320 -1.3466 0.0129 9 6 7.7956 -1.4106 0.0189 10 6 8.2354 -2.8520 0.0251 11 6 8.4378 -3.5077 1.2250 12 6 8.8366 -4.8313 1.2305 13 6 9.0427 -5.4961 0.0362 14 6 9.4826 -6.9375 0.0422 15 7 10.9462 -7.0015 0.0483 16 6 11.5784 -8.2160 0.0549 17 1 10.9981 -9.1269 0.0553 18 6 12.9652 -8.2767 0.0602 19 7 13.6724 -7.1666 0.0592 20 14 13.8276 -9.9337 0.0685 21 1 13.4397 -10.6998 -1.1430 22 1 15.2981 -9.7263 0.0738 23 1 13.4308 -10.6921 1.2820 24 6 8.8459 -4.8386 -1.1638 25 6 8.4420 -3.5165 -1.1693 26 7 3.5217 -1.2093 0.0005 27 6 2.2065 -1.1960 0.0000 28 6 1.4502 -2.4994 -0.0006 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 1.6847 2.1420 -0.0007 33 1 4.1693 2.0650 0.0010 34 1 5.8108 -2.1648 0.0129 35 1 8.1845 -0.9154 -0.8708 36 1 8.1774 -0.9107 0.9092 37 1 8.2803 -2.9873 2.1581 38 1 8.9908 -5.3449 2.1680 39 1 9.0935 -7.4324 0.9321 40 1 9.1007 -7.4376 -0.8478 41 1 11.4673 -6.1834 0.0483 42 1 14.6415 -7.2090 0.0625 43 1 9.0073 -5.3578 -2.0969 44 1 8.2877 -3.0030 -2.1068 45 1 1.2673 -2.8139 1.0270 46 1 0.4982 -2.3669 -0.5148 47 1 2.0377 -3.2602 -0.5143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318999101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:51 Heat of formation + Delta-G solvation = 6.028959 kcal Electronic energy + Delta-G solvation = -27011.318660 eV Core-core repulsion = 23157.812324 eV Total energy + Delta-G solvation = -3853.506336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80846 -40.69266 -39.96543 -36.98332 -35.85968 -34.96031 -34.04244 -33.68451 -31.87127 -31.83902 -29.42522 -28.95336 -27.88483 -26.01218 -24.38520 -23.87579 -23.64670 -23.00065 -21.72485 -21.59264 -19.33155 -19.29801 -17.87972 -17.09924 -16.87709 -16.75025 -16.57178 -16.23784 -16.21842 -15.90563 -15.47448 -15.42416 -15.25351 -14.92971 -14.53642 -14.35873 -14.19675 -14.12177 -13.71294 -13.68227 -13.61861 -13.47130 -13.13125 -13.12135 -12.99493 -12.96544 -12.72919 -12.33473 -12.24661 -11.96816 -11.93164 -11.75477 -11.50178 -10.97581 -10.78229 -10.58622 -10.27882 -9.83953 -9.77743 -9.66806 -9.03813 -7.95708 -5.26312 -0.41934 0.19851 0.21984 0.49019 1.47368 1.50945 1.57191 1.61366 2.05119 2.55228 2.76653 2.83039 3.05619 3.37159 3.60110 3.69433 3.79591 3.86976 3.87133 3.95408 4.02958 4.11339 4.23814 4.24358 4.25861 4.54103 4.56676 4.62272 4.67159 4.67781 4.74085 4.75946 4.87922 4.88547 4.90246 5.05268 5.05788 5.15067 5.18127 5.22446 5.23451 5.29894 5.43573 5.47042 5.57567 5.68795 5.79357 6.04186 6.24519 6.32392 6.76074 7.04519 7.31257 8.04114 8.29601 9.27289 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.001735 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.210431 B =16138.282094 C =17009.089739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.108 4.108 3 C -0.081 4.081 4 C -0.121 4.121 5 C 0.049 3.951 6 C 0.568 3.432 7 O -0.569 6.569 8 N -0.697 5.697 9 C 0.169 3.831 10 C -0.111 4.111 11 C -0.098 4.098 12 C -0.115 4.115 13 C -0.086 4.086 14 C 0.186 3.814 15 N -0.739 5.739 16 C -0.251 4.251 17 H 0.079 0.921 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.978 3.022 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.276 1.276 24 C -0.115 4.115 25 C -0.098 4.098 26 N -0.474 5.474 27 C 0.109 3.891 28 C -0.107 4.107 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.416 0.584 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.123 0.877 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.135 17.355 -0.130 36.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.110 4.110 3 C -0.106 4.106 4 C -0.142 4.142 5 C -0.088 4.088 6 C 0.354 3.646 7 O -0.448 6.448 8 N -0.347 5.347 9 C 0.046 3.954 10 C -0.112 4.112 11 C -0.116 4.116 12 C -0.133 4.133 13 C -0.086 4.086 14 C 0.060 3.940 15 N -0.382 5.382 16 C -0.382 4.382 17 H 0.097 0.903 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.807 3.193 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.202 1.202 24 C -0.133 4.133 25 C -0.116 4.116 26 N -0.186 5.186 27 C -0.032 4.032 28 C -0.164 4.164 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.191 0.809 33 H 0.164 0.836 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.158 0.842 38 H 0.141 0.859 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.141 0.859 44 H 0.158 0.842 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -31.155 17.076 -0.130 35.528 hybrid contribution 0.877 -0.231 0.028 0.907 sum -30.278 16.845 -0.102 34.649 Atomic orbital electron populations 1.20994 0.87113 1.04975 1.04161 1.21392 0.99707 0.92780 0.97108 1.21893 0.92619 1.00055 0.96044 1.22224 0.96204 0.98263 0.97557 1.20924 0.93141 0.90789 1.03987 1.18201 0.86756 0.83504 0.76101 1.90760 1.66810 1.35095 1.52161 1.45911 1.07325 1.08727 1.72750 1.20175 0.79410 0.92395 1.03418 1.19766 1.02714 0.95200 0.93530 1.21190 0.98313 0.93859 0.98274 1.21172 0.99328 0.95175 0.97675 1.20181 0.98085 0.96182 0.94181 1.19760 0.84185 0.91380 0.98650 1.42525 1.00871 1.05264 1.89494 1.19648 0.90052 0.86724 1.41815 0.90336 1.25633 0.97067 1.00614 1.03393 1.69842 1.05297 1.27663 1.59143 0.85147 0.76852 0.79060 0.78285 1.20227 1.22150 1.20235 1.21173 0.99313 0.95246 0.97616 1.21191 0.98282 0.93823 0.98338 1.67325 1.09478 1.30307 1.11499 1.21722 0.88606 0.97223 0.95627 1.20912 0.99906 0.91340 1.04225 0.89128 0.89574 0.89211 0.80919 0.83581 0.74657 0.90233 0.90242 0.84161 0.85872 0.95109 0.95103 0.79511 0.93971 0.85869 0.84157 0.89247 0.87714 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.33 9.62 71.24 0.69 0.36 16 2 C -0.11 -1.13 5.91 -19.69 -0.12 -1.24 16 3 C -0.08 -0.91 9.85 22.45 0.22 -0.69 16 4 C -0.12 -2.13 9.63 22.61 0.22 -1.91 16 5 C 0.05 1.07 6.75 41.91 0.28 1.35 16 6 C 0.57 14.50 7.81 86.88 0.68 15.18 16 7 O -0.57 -17.51 16.32 -3.75 -0.06 -17.57 16 8 N -0.70 -15.83 5.54 -469.39 -2.60 -18.43 16 9 C 0.17 3.86 5.80 85.63 0.50 4.36 16 10 C -0.11 -2.79 5.25 -19.87 -0.10 -2.90 16 11 C -0.10 -2.59 9.70 22.27 0.22 -2.37 16 12 C -0.11 -3.63 9.70 22.27 0.22 -3.42 16 13 C -0.09 -3.02 5.25 -19.87 -0.10 -3.13 16 14 C 0.19 7.76 6.38 85.63 0.55 8.30 16 15 N -0.74 -38.87 5.59 -347.19 -1.94 -40.81 16 16 C -0.25 -14.29 9.99 84.04 0.84 -13.45 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 20 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 C -0.11 -3.63 9.70 22.27 0.22 -3.41 16 25 C -0.10 -2.59 9.70 22.27 0.22 -2.37 16 26 N -0.47 -9.56 9.45 -173.09 -1.64 -11.20 16 27 C 0.11 1.59 6.78 42.68 0.29 1.88 16 28 C -0.11 -0.93 9.77 71.23 0.70 -0.24 16 29 H 0.09 0.11 8.14 -2.39 -0.02 0.10 16 30 H 0.09 0.05 8.09 -2.39 -0.02 0.03 16 31 H 0.09 0.07 5.95 -2.39 -0.01 0.06 16 32 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.15 2.50 7.64 -2.91 -0.02 2.48 16 34 H 0.42 8.92 7.79 -92.70 -0.72 8.20 16 35 H 0.08 1.83 8.09 -2.38 -0.02 1.81 16 36 H 0.08 1.82 8.08 -2.38 -0.02 1.80 16 37 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.03 1.26 8.09 -2.38 -0.02 1.24 16 40 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 41 H 0.37 21.17 7.66 -92.71 -0.71 20.46 16 42 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 43 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.10 0.36 5.94 -2.38 -0.01 0.34 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.83 400.20 1.60 -72.23 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.43 Total: 34.99 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.96 Total: -7.58 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -5.89 Total: -130.64 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.06 Total: -17.57 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -73.83 1.60 -72.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318999101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.254 kcal (2) G-P(sol) polarization free energy of solvation -73.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds