Wall clock time and date at job start Tue Mar 31 2020 22:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36616 * 120.92358 * 2 1 4 4 C 1.39272 * 119.91178 * 179.97438 * 3 2 1 5 5 N 1.31141 * 121.76459 * 359.96847 * 4 3 2 6 6 C 1.33613 * 121.39740 * 0.05346 * 5 4 3 7 7 C 1.40771 * 120.83595 * 179.97438 * 6 5 4 8 8 C 1.35684 * 120.11392 * 180.02562 * 7 6 5 9 9 C 1.40637 * 120.92661 * 359.95000 * 8 7 6 10 10 C 1.47765 * 119.79946 * 180.02562 * 9 8 7 11 11 O 1.21568 * 119.99994 * 206.52956 * 10 9 8 12 12 N 1.34776 * 120.00331 * 26.25930 * 10 9 8 13 13 C 1.47428 * 125.64781 * 356.43533 * 12 10 9 14 14 C 1.54903 * 104.82960 * 155.83705 * 13 12 10 15 15 C 1.55155 * 101.58439 * 37.01032 * 14 13 12 16 16 C 1.47020 * 125.65015 * 176.13108 * 12 10 9 17 17 H 1.09003 * 109.88320 * 300.51096 * 16 12 10 18 18 C 1.53003 * 109.88350 * 61.67172 * 16 12 10 19 19 N 1.46497 * 109.47459 * 287.40418 * 18 16 12 20 20 C 1.36930 * 119.99824 * 172.81432 * 19 18 16 21 21 H 1.08004 * 120.00172 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99748 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00289 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47063 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47120 * 119.99707 * 24 22 20 27 27 H 1.48500 * 109.47017 * 239.99669 * 24 22 20 28 28 C 1.38538 * 120.39669 * 0.29664 * 9 8 7 29 29 C 1.40196 * 119.40184 * 359.48292 * 28 9 8 30 30 H 1.08996 * 109.46905 * 270.03041 * 1 2 3 31 31 H 1.09005 * 109.46754 * 30.02265 * 1 2 3 32 32 H 1.09001 * 109.47148 * 150.02566 * 1 2 3 33 33 H 1.08006 * 120.04473 * 359.97438 * 3 2 1 34 34 H 1.07995 * 119.11438 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.93483 * 359.96773 * 7 6 5 36 36 H 1.08007 * 119.53799 * 179.97438 * 8 7 6 37 37 H 1.09001 * 110.36449 * 274.67893 * 13 12 10 38 38 H 1.09002 * 110.36200 * 36.99959 * 13 12 10 39 39 H 1.09009 * 111.00230 * 155.08768 * 14 13 12 40 40 H 1.09000 * 111.00793 * 278.93213 * 14 13 12 41 41 H 1.09000 * 110.71827 * 82.86063 * 15 14 13 42 42 H 1.08997 * 110.71689 * 205.95260 * 15 14 13 43 43 H 1.09003 * 109.46741 * 47.40835 * 18 16 12 44 44 H 1.09001 * 109.46887 * 167.40158 * 18 16 12 45 45 H 0.96999 * 119.99630 * 352.80529 * 19 18 16 46 46 H 0.97001 * 120.00045 * 180.02562 * 23 22 20 47 47 H 1.08005 * 120.29765 * 179.72557 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6016 1.1474 0.0005 5 7 4.2721 0.0204 0.0017 6 6 3.6479 -1.1610 0.0013 7 6 4.3796 -2.3637 0.0020 8 6 3.7307 -3.5553 0.0011 9 6 2.3255 -3.6130 0.0005 10 6 1.6444 -4.9244 0.0000 11 8 0.5285 -5.0296 -0.4707 12 7 2.2625 -6.0050 0.5166 13 6 3.6388 -6.0372 1.0441 14 6 3.6552 -7.2264 2.0367 15 6 2.7364 -8.2473 1.3150 16 6 1.6738 -7.3452 0.6531 17 1 0.7834 -7.2969 1.2800 18 6 1.3125 -7.8979 -0.7271 19 7 0.1383 -7.1909 -1.2443 20 6 -0.2830 -7.4114 -2.5284 21 1 0.2505 -8.1063 -3.1600 22 6 -1.3953 -6.7411 -3.0186 23 7 -2.0452 -5.8939 -2.2491 24 14 -1.9698 -7.0414 -4.7706 25 1 -1.0748 -8.0312 -5.4222 26 1 -3.3590 -7.5657 -4.7530 27 1 -1.9319 -5.7655 -5.5295 28 6 1.5760 -2.4479 -0.0054 29 6 2.2308 -1.2083 0.0003 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6849 2.1163 -0.0004 34 1 4.1436 2.0814 0.0010 35 1 5.4593 -2.3377 0.0023 36 1 4.3012 -4.4723 0.0012 37 1 4.3507 -6.2074 0.2364 38 1 3.8680 -5.1066 1.5632 39 1 4.6636 -7.6232 2.1544 40 1 3.2361 -6.9367 3.0003 41 1 3.2955 -8.8056 0.5641 42 1 2.2746 -8.9251 2.0328 43 1 2.1521 -7.7541 -1.4072 44 1 1.0893 -8.9617 -0.6454 45 1 -0.3407 -6.5666 -0.6771 46 1 -2.8227 -5.4257 -2.5916 47 1 0.4969 -2.4942 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319074505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:30 Heat of formation + Delta-G solvation = 67.456662 kcal Electronic energy + Delta-G solvation = -29671.884248 eV Core-core repulsion = 25821.041617 eV Total energy + Delta-G solvation = -3850.842631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06237 -39.87106 -37.39459 -36.48034 -34.75583 -34.18581 -31.90410 -31.16888 -30.40828 -30.29233 -28.70184 -27.92119 -25.22789 -24.62680 -23.67790 -22.90147 -21.68066 -21.21560 -20.86953 -19.15209 -18.41611 -17.33423 -16.87689 -16.51794 -16.29298 -15.55862 -14.89180 -14.71508 -14.52900 -14.37964 -14.16697 -13.95573 -13.65348 -13.49603 -13.20960 -13.14029 -12.95668 -12.89527 -12.80458 -12.46220 -12.40800 -11.86386 -11.70697 -11.53430 -11.47280 -11.43601 -11.11661 -10.83540 -10.69296 -10.59706 -10.44165 -10.24281 -9.91752 -9.60128 -9.52505 -8.92844 -8.79590 -8.64488 -8.26041 -8.07836 -6.54240 -5.44943 -2.71396 0.23845 0.65126 1.88879 2.57448 3.29991 3.55617 3.58962 3.60733 3.62868 4.08495 4.16800 4.42103 4.50599 4.55882 4.59657 4.71057 4.78764 4.87990 4.95992 5.02216 5.08053 5.20118 5.29313 5.36339 5.40594 5.44419 5.44716 5.56075 5.61084 5.75428 5.80496 5.83945 5.87441 5.88958 5.97676 6.00738 6.01133 6.09006 6.21630 6.24833 6.36200 6.45872 6.50807 6.66289 6.74027 6.85630 7.03156 7.79954 7.90477 7.97048 8.64123 8.87601 9.86294 10.52597 10.94247 11.75956 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.004149 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.886030 B = 6746.696705 C = 9039.729793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.008 4.008 3 C -0.192 4.192 4 C 0.138 3.862 5 N -0.485 5.485 6 C 0.141 3.859 7 C -0.106 4.106 8 C -0.088 4.088 9 C -0.112 4.112 10 C 0.546 3.454 11 O -0.442 6.442 12 N -0.612 5.612 13 C 0.092 3.908 14 C -0.134 4.134 15 C -0.124 4.124 16 C 0.132 3.868 17 H 0.074 0.926 18 C 0.144 3.856 19 N -0.720 5.720 20 C -0.234 4.234 21 H 0.060 0.940 22 C -0.010 4.010 23 N -0.915 5.915 24 Si 0.894 3.106 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.295 1.295 28 C -0.033 4.033 29 C -0.110 4.110 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.401 0.599 46 H 0.247 0.753 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.365 9.917 11.948 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 C -0.212 4.212 4 C -0.034 4.034 5 N -0.194 5.194 6 C 0.020 3.980 7 C -0.124 4.124 8 C -0.108 4.108 9 C -0.115 4.115 10 C 0.332 3.668 11 O -0.311 6.311 12 N -0.350 5.350 13 C -0.031 4.031 14 C -0.172 4.172 15 C -0.163 4.163 16 C 0.029 3.971 17 H 0.092 0.908 18 C 0.015 3.985 19 N -0.373 5.373 20 C -0.366 4.366 21 H 0.078 0.922 22 C -0.206 4.206 23 N -0.564 5.564 24 Si 0.726 3.274 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.223 1.223 28 C -0.052 4.052 29 C -0.112 4.112 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.036 0.964 44 H 0.034 0.966 45 H 0.245 0.755 46 H 0.057 0.943 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.557 9.802 11.491 20.977 hybrid contribution -1.214 0.130 -1.026 1.595 sum 13.343 9.932 10.464 19.652 Atomic orbital electron populations 1.20980 0.89636 1.04384 1.03444 1.20287 0.96906 0.91993 0.92432 1.21724 0.95585 0.98720 1.05130 1.22916 0.91516 0.96384 0.92613 1.68029 1.39939 0.97736 1.13650 1.18965 0.89594 0.92489 0.96972 1.20632 1.00231 0.89841 1.01741 1.21591 0.93638 0.98996 0.96553 1.20036 0.93635 0.94016 1.03842 1.17957 0.86702 0.82640 0.79493 1.90969 1.17476 1.82634 1.40070 1.48288 1.14178 1.09468 1.63063 1.22626 0.84958 0.99203 0.96325 1.22801 1.00417 0.95593 0.98397 1.22630 0.96752 0.97240 0.99655 1.21892 0.95761 0.81179 0.98311 0.90841 1.20983 0.91798 0.94716 0.90990 1.43034 1.29914 1.50916 1.13484 1.19186 1.08007 1.19443 0.89974 0.92190 1.24644 0.98938 0.99744 0.97317 1.69759 1.21102 1.30754 1.34737 0.86307 0.78232 0.77033 0.85813 1.20892 1.22175 1.22256 1.21501 1.00944 0.89598 0.93174 1.18680 0.94051 0.93986 1.04434 0.89913 0.90520 0.89797 0.84584 0.82526 0.84502 0.83677 0.91433 0.90302 0.90111 0.90718 0.90343 0.90188 0.96436 0.96587 0.75511 0.94310 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.60 36.01 0.35 -0.97 16 2 C -0.01 -0.10 5.92 -104.22 -0.62 -0.72 16 3 C -0.19 -1.92 9.72 -39.78 -0.39 -2.30 16 4 C 0.14 1.44 11.14 -17.46 -0.19 1.25 16 5 N -0.48 -6.44 10.33 -10.92 -0.11 -6.56 16 6 C 0.14 2.00 6.61 -84.78 -0.56 1.44 16 7 C -0.11 -1.35 9.95 -39.54 -0.39 -1.75 16 8 C -0.09 -1.16 7.83 -39.59 -0.31 -1.47 16 9 C -0.11 -1.83 5.71 -104.99 -0.60 -2.43 16 10 C 0.55 10.64 7.46 -12.37 -0.09 10.55 16 11 O -0.44 -11.07 12.53 5.31 0.07 -11.00 16 12 N -0.61 -10.00 3.07 -164.15 -0.50 -10.51 16 13 C 0.09 1.03 5.00 -2.53 -0.01 1.02 16 14 C -0.13 -1.25 7.08 -24.59 -0.17 -1.42 16 15 C -0.12 -1.44 6.45 -24.91 -0.16 -1.60 16 16 C 0.13 2.22 3.11 -66.96 -0.21 2.02 16 17 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.14 3.11 5.63 -4.04 -0.02 3.09 16 19 N -0.72 -19.87 4.15 -59.91 -0.25 -20.12 16 20 C -0.23 -7.10 9.99 -15.06 -0.15 -7.25 16 21 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.91 -29.52 13.06 55.49 0.72 -28.79 16 24 Si 0.89 23.85 29.55 -169.99 -5.02 18.82 16 25 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 28 C -0.03 -0.52 8.88 -38.74 -0.34 -0.87 16 29 C -0.11 -1.58 5.74 -106.82 -0.61 -2.19 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.08 1.01 6.50 -51.93 -0.34 0.67 16 33 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.15 1.60 4.40 -52.48 -0.23 1.37 16 37 H 0.07 0.69 7.28 -51.93 -0.38 0.32 16 38 H 0.08 0.79 6.10 -51.93 -0.32 0.47 16 39 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 45 H 0.40 11.75 4.74 -41.06 -0.19 11.56 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.15 2.43 6.21 -52.48 -0.33 2.10 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -37.93 373.82 -10.44 -48.37 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.39 Total: 8.15 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -4.59 Total: -4.01 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.14 Total: -65.97 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.02 Total: 18.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.93 -10.44 -48.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319074505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.829 kcal (2) G-P(sol) polarization free energy of solvation -37.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds