Wall clock time and date at job start Tue Mar 31 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36616 * 120.92358 * 2 1 4 4 C 1.39272 * 119.91178 * 179.97438 * 3 2 1 5 5 N 1.31141 * 121.76459 * 359.96847 * 4 3 2 6 6 C 1.33613 * 121.39740 * 0.05346 * 5 4 3 7 7 C 1.40771 * 120.83595 * 179.97438 * 6 5 4 8 8 C 1.35684 * 120.11392 * 180.02562 * 7 6 5 9 9 C 1.40637 * 120.92661 * 359.95000 * 8 7 6 10 10 C 1.47765 * 119.79946 * 180.02562 * 9 8 7 11 11 O 1.21568 * 119.99994 * 206.52956 * 10 9 8 12 12 N 1.34776 * 120.00331 * 26.25930 * 10 9 8 13 13 C 1.47428 * 125.64781 * 356.43533 * 12 10 9 14 14 C 1.54903 * 104.82960 * 155.83705 * 13 12 10 15 15 C 1.55155 * 101.58439 * 37.01032 * 14 13 12 16 16 C 1.47020 * 125.65015 * 176.13108 * 12 10 9 17 17 H 1.09003 * 109.88320 * 300.51096 * 16 12 10 18 18 C 1.53003 * 109.88350 * 61.67172 * 16 12 10 19 19 N 1.46497 * 109.47459 * 287.40418 * 18 16 12 20 20 C 1.36930 * 119.99824 * 172.81432 * 19 18 16 21 21 H 1.08004 * 120.00172 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99748 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00289 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47063 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47120 * 119.99707 * 24 22 20 27 27 H 1.48500 * 109.47017 * 239.99669 * 24 22 20 28 28 C 1.38538 * 120.39669 * 0.29664 * 9 8 7 29 29 C 1.40196 * 119.40184 * 359.48292 * 28 9 8 30 30 H 1.08996 * 109.46905 * 270.03041 * 1 2 3 31 31 H 1.09005 * 109.46754 * 30.02265 * 1 2 3 32 32 H 1.09001 * 109.47148 * 150.02566 * 1 2 3 33 33 H 1.08006 * 120.04473 * 359.97438 * 3 2 1 34 34 H 1.07995 * 119.11438 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.93483 * 359.96773 * 7 6 5 36 36 H 1.08007 * 119.53799 * 179.97438 * 8 7 6 37 37 H 1.09001 * 110.36449 * 274.67893 * 13 12 10 38 38 H 1.09002 * 110.36200 * 36.99959 * 13 12 10 39 39 H 1.09009 * 111.00230 * 155.08768 * 14 13 12 40 40 H 1.09000 * 111.00793 * 278.93213 * 14 13 12 41 41 H 1.09000 * 110.71827 * 82.86063 * 15 14 13 42 42 H 1.08997 * 110.71689 * 205.95260 * 15 14 13 43 43 H 1.09003 * 109.46741 * 47.40835 * 18 16 12 44 44 H 1.09001 * 109.46887 * 167.40158 * 18 16 12 45 45 H 0.96999 * 119.99630 * 352.80529 * 19 18 16 46 46 H 0.97001 * 120.00045 * 180.02562 * 23 22 20 47 47 H 1.08005 * 120.29765 * 179.72557 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6016 1.1474 0.0005 5 7 4.2721 0.0204 0.0017 6 6 3.6479 -1.1610 0.0013 7 6 4.3796 -2.3637 0.0020 8 6 3.7307 -3.5553 0.0011 9 6 2.3255 -3.6130 0.0005 10 6 1.6444 -4.9244 0.0000 11 8 0.5285 -5.0296 -0.4707 12 7 2.2625 -6.0050 0.5166 13 6 3.6388 -6.0372 1.0441 14 6 3.6552 -7.2264 2.0367 15 6 2.7364 -8.2473 1.3150 16 6 1.6738 -7.3452 0.6531 17 1 0.7834 -7.2969 1.2800 18 6 1.3125 -7.8979 -0.7271 19 7 0.1383 -7.1909 -1.2443 20 6 -0.2830 -7.4114 -2.5284 21 1 0.2505 -8.1063 -3.1600 22 6 -1.3953 -6.7411 -3.0186 23 7 -2.0452 -5.8939 -2.2491 24 14 -1.9698 -7.0414 -4.7706 25 1 -1.0748 -8.0312 -5.4222 26 1 -3.3590 -7.5657 -4.7530 27 1 -1.9319 -5.7655 -5.5295 28 6 1.5760 -2.4479 -0.0054 29 6 2.2308 -1.2083 0.0003 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6849 2.1163 -0.0004 34 1 4.1436 2.0814 0.0010 35 1 5.4593 -2.3377 0.0023 36 1 4.3012 -4.4723 0.0012 37 1 4.3507 -6.2074 0.2364 38 1 3.8680 -5.1066 1.5632 39 1 4.6636 -7.6232 2.1544 40 1 3.2361 -6.9367 3.0003 41 1 3.2955 -8.8056 0.5641 42 1 2.2746 -8.9251 2.0328 43 1 2.1521 -7.7541 -1.4072 44 1 1.0893 -8.9617 -0.6454 45 1 -0.3407 -6.5666 -0.6771 46 1 -2.8227 -5.4257 -2.5916 47 1 0.4969 -2.4942 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319074505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:29 Heat of formation + Delta-G solvation = 42.248569 kcal Electronic energy + Delta-G solvation = -29672.977353 eV Core-core repulsion = 25821.041617 eV Total energy + Delta-G solvation = -3851.935736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.10012 -41.10669 -38.59664 -37.72752 -36.15667 -35.68684 -33.47627 -32.73746 -31.47550 -31.37829 -30.25672 -28.83427 -26.78626 -25.93269 -24.82000 -24.35940 -23.23049 -22.17650 -21.90625 -20.43091 -19.67209 -18.99110 -18.19747 -17.71637 -17.42430 -16.80170 -16.59582 -16.09179 -15.69504 -15.49953 -15.25994 -15.22632 -15.02727 -14.95403 -14.72732 -14.26695 -14.03166 -14.01685 -13.84902 -13.69373 -13.52069 -13.21356 -13.08804 -12.94287 -12.76358 -12.71782 -12.63556 -12.41741 -12.22598 -12.00221 -11.71784 -11.60597 -11.48063 -11.19300 -10.90173 -10.58599 -10.50093 -9.82558 -9.57171 -9.22262 -8.75940 -7.79178 -5.06017 -0.78962 -0.33766 0.85130 1.40034 1.42897 1.50702 1.52044 2.03554 2.31419 2.58645 3.03901 3.26893 3.45170 3.47891 3.50258 3.61711 3.69821 3.75803 3.81439 3.98689 4.02809 4.05545 4.23300 4.29249 4.42578 4.43062 4.48880 4.49489 4.63455 4.64119 4.73443 4.81246 4.83365 4.86727 4.90856 4.92348 5.01659 5.02729 5.09643 5.16676 5.18837 5.21352 5.33075 5.41633 5.48783 5.50841 5.62096 5.77294 6.37918 6.64500 6.86950 7.31152 7.53306 8.37141 8.67373 9.42593 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.004149 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.886030 B = 6746.696705 C = 9039.729793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.028 4.028 3 C -0.177 4.177 4 C 0.143 3.857 5 N -0.503 5.503 6 C 0.125 3.875 7 C -0.098 4.098 8 C -0.086 4.086 9 C -0.131 4.131 10 C 0.537 3.463 11 O -0.515 6.515 12 N -0.611 5.611 13 C 0.081 3.919 14 C -0.118 4.118 15 C -0.114 4.114 16 C 0.131 3.869 17 H 0.049 0.951 18 C 0.141 3.859 19 N -0.736 5.736 20 C -0.243 4.243 21 H 0.062 0.938 22 C -0.075 4.075 23 N -0.951 5.951 24 Si 0.964 3.036 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.298 1.298 28 C -0.048 4.048 29 C -0.127 4.127 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.175 0.825 34 H 0.199 0.801 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.011 0.989 44 H 0.024 0.976 45 H 0.390 0.610 46 H 0.242 0.758 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.734 10.997 12.661 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.036 4.036 3 C -0.196 4.196 4 C -0.029 4.029 5 N -0.213 5.213 6 C 0.005 3.995 7 C -0.116 4.116 8 C -0.106 4.106 9 C -0.134 4.134 10 C 0.325 3.675 11 O -0.390 6.390 12 N -0.346 5.346 13 C -0.040 4.040 14 C -0.156 4.156 15 C -0.152 4.152 16 C 0.027 3.973 17 H 0.067 0.933 18 C 0.013 3.987 19 N -0.388 5.388 20 C -0.376 4.376 21 H 0.080 0.920 22 C -0.267 4.267 23 N -0.602 5.602 24 Si 0.794 3.206 25 H -0.193 1.193 26 H -0.217 1.217 27 H -0.226 1.226 28 C -0.067 4.067 29 C -0.129 4.129 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.193 0.807 34 H 0.216 0.784 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.029 0.971 44 H 0.041 0.959 45 H 0.233 0.767 46 H 0.051 0.949 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.015 10.833 12.240 24.325 hybrid contribution -2.194 -0.077 -1.194 2.499 sum 15.821 10.756 11.046 22.091 Atomic orbital electron populations 1.20974 0.89053 1.04069 1.04028 1.20560 0.97640 0.92151 0.93202 1.22158 0.95647 0.99308 1.02487 1.23700 0.92092 0.97053 0.90011 1.68116 1.40276 0.98019 1.14842 1.19257 0.89461 0.93670 0.97160 1.20942 1.01441 0.89083 1.00171 1.21689 0.91921 1.00363 0.96600 1.19946 0.95186 0.92323 1.05973 1.18575 0.86102 0.84284 0.78545 1.90916 1.20531 1.83891 1.43615 1.48406 1.16122 1.08365 1.61704 1.23030 0.82111 1.01310 0.97579 1.22826 1.01882 0.93429 0.97477 1.22627 0.95521 0.96997 1.00074 1.21883 0.97252 0.82706 0.95433 0.93308 1.21189 0.89454 0.94649 0.93389 1.43301 1.31597 1.51211 1.12696 1.19593 1.07864 1.18854 0.91304 0.92027 1.25495 0.99529 1.00085 1.01636 1.69975 1.21499 1.32070 1.36631 0.85203 0.77825 0.76826 0.80735 1.19259 1.21749 1.22616 1.21424 1.00009 0.90909 0.94392 1.18836 0.94793 0.93998 1.05283 0.88921 0.88079 0.92748 0.80738 0.78395 0.81749 0.81376 0.89636 0.88655 0.86223 0.90128 0.89311 0.88415 0.97107 0.95858 0.76728 0.94948 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.60 71.24 0.68 -1.97 16 2 C -0.03 -0.66 5.92 -19.60 -0.12 -0.77 16 3 C -0.18 -3.03 9.72 22.14 0.22 -2.81 16 4 C 0.14 2.51 11.14 85.04 0.95 3.46 16 5 N -0.50 -12.20 10.33 -188.46 -1.95 -14.15 16 6 C 0.13 3.45 6.61 40.37 0.27 3.72 16 7 C -0.10 -2.37 9.95 22.30 0.22 -2.14 16 8 C -0.09 -2.24 7.83 22.26 0.17 -2.06 16 9 C -0.13 -4.55 5.71 -20.10 -0.11 -4.67 16 10 C 0.54 22.48 7.46 86.76 0.65 23.12 16 11 O -0.51 -28.27 12.53 -3.93 -0.05 -28.32 16 12 N -0.61 -20.40 3.07 -791.53 -2.43 -22.83 16 13 C 0.08 1.64 5.00 86.85 0.43 2.07 16 14 C -0.12 -1.77 7.08 31.98 0.23 -1.54 16 15 C -0.11 -2.38 6.45 31.78 0.21 -2.18 16 16 C 0.13 4.52 3.11 45.34 0.14 4.66 16 17 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 18 C 0.14 6.30 5.63 86.38 0.49 6.78 16 19 N -0.74 -42.92 4.15 -343.45 -1.43 -44.35 16 20 C -0.24 -15.37 9.99 84.03 0.84 -14.53 16 21 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -4.79 5.50 84.86 0.47 -4.32 16 23 N -0.95 -64.82 13.06 21.65 0.28 -64.54 16 24 Si 0.96 50.86 29.55 68.60 2.03 52.88 16 25 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 27 H -0.30 -15.78 7.11 99.48 0.71 -15.07 16 28 C -0.05 -1.66 8.88 22.82 0.20 -1.46 16 29 C -0.13 -3.76 5.74 -21.29 -0.12 -3.89 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.59 8.10 -2.38 -0.02 1.57 16 32 H 0.05 1.48 6.50 -2.39 -0.02 1.46 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.17 3.40 4.40 -2.91 -0.01 3.38 16 37 H 0.09 1.48 7.28 -2.39 -0.02 1.46 16 38 H 0.10 1.67 6.10 -2.39 -0.01 1.65 16 39 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.72 7.86 -2.39 -0.02 1.70 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.02 1.02 8.12 -2.39 -0.02 1.00 16 45 H 0.39 24.63 4.74 -96.54 -0.46 24.17 16 46 H 0.24 15.89 8.31 -92.71 -0.77 15.12 16 47 H 0.12 4.72 6.21 -2.91 -0.02 4.70 16 Total: -1.00 -90.46 373.82 2.81 -87.65 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.55 Total: 32.17 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.81 Total: 1.48 kcal Atomic # 7 Polarization: -140.35 SS G_CDS: -5.52 Total: -145.87 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.05 Total: -28.32 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.03 Total: 52.88 kcal Total: -90.46 2.81 -87.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319074505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.898 kcal (2) G-P(sol) polarization free energy of solvation -90.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds