Wall clock time and date at job start Tue Mar 31 2020 22:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39304 * 119.11722 * 2 1 4 4 C 1.36584 * 119.90842 * 179.97438 * 3 2 1 5 5 C 1.40889 * 118.15515 * 0.02562 * 4 3 2 6 6 C 1.40179 * 121.22813 * 180.25829 * 5 4 3 7 7 C 1.38549 * 119.40310 * 180.26266 * 6 5 4 8 8 C 1.47772 * 119.80357 * 179.75023 * 7 6 5 9 9 O 1.21557 * 120.00051 * 359.72734 * 8 7 6 10 10 N 1.34773 * 119.99556 * 179.72103 * 8 7 6 11 11 C 1.46505 * 119.99794 * 180.02562 * 10 8 7 12 12 H 1.09008 * 109.46951 * 35.00279 * 11 10 8 13 13 C 1.53001 * 109.47256 * 154.99941 * 11 10 8 14 14 N 1.46493 * 109.47086 * 305.00012 * 13 11 10 15 15 C 1.36945 * 119.99892 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99422 * 359.72792 * 15 14 13 17 17 C 1.38811 * 120.00031 * 179.72716 * 15 14 13 18 18 N 1.31616 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47151 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47196 * 120.00214 * 19 17 15 22 22 H 1.48500 * 109.46879 * 240.00070 * 19 17 15 23 23 C 1.52995 * 109.47326 * 275.00509 * 11 10 8 24 24 C 1.52999 * 117.50328 * 128.74279 * 23 11 10 25 25 C 1.53001 * 117.50123 * 60.08139 * 23 11 10 26 26 C 1.40627 * 120.39355 * 359.47077 * 7 6 5 27 27 C 1.35705 * 120.91817 * 0.26044 * 26 7 6 28 28 C 1.40763 * 120.10962 * 0.02562 * 27 26 7 29 29 N 1.31116 * 119.11297 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47368 * 90.00027 * 1 2 3 31 31 H 1.09001 * 109.47919 * 210.00027 * 1 2 3 32 32 H 1.08998 * 109.47125 * 330.00367 * 1 2 3 33 33 H 1.08005 * 120.04952 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.92253 * 180.02562 * 4 3 2 35 35 H 1.08009 * 120.30067 * 359.97438 * 6 5 4 36 36 H 0.96995 * 120.00881 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47065 * 184.99789 * 13 11 10 38 38 H 1.09001 * 109.46892 * 65.00053 * 13 11 10 39 39 H 0.97000 * 120.00738 * 359.73142 * 14 13 11 40 40 H 0.97004 * 119.99151 * 179.97438 * 18 17 15 41 41 H 1.09003 * 115.54789 * 274.41858 * 23 11 10 42 42 H 1.08993 * 117.49777 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49495 * 145.01900 * 24 23 11 44 44 H 1.09004 * 117.50191 * 214.98494 * 25 23 11 45 45 H 1.09003 * 117.49677 * 359.97438 * 25 23 11 46 46 H 1.07998 * 119.54505 * 180.27764 * 26 7 6 47 47 H 1.08000 * 119.94512 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2170 0.0000 4 6 3.5506 1.2359 0.0005 5 6 4.2325 0.0030 0.0005 6 6 5.6331 -0.0528 0.0064 7 6 6.2648 -1.2860 0.0007 8 6 7.7409 -1.3551 0.0013 9 8 8.3972 -0.3320 0.0018 10 7 8.3593 -2.5526 0.0013 11 6 9.8227 -2.6212 0.0025 12 1 10.2246 -1.7974 0.5926 13 6 10.2705 -3.9511 0.6120 14 7 9.6776 -4.1025 1.9430 15 6 9.9380 -5.2236 2.6851 16 1 10.5768 -5.9982 2.2872 17 6 9.3807 -5.3645 3.9486 18 7 8.6018 -4.4207 4.4332 19 14 9.7364 -6.8935 4.9611 20 1 10.6331 -7.7965 4.1957 21 1 10.3953 -6.5026 6.2332 22 1 8.4631 -7.5971 5.2590 23 6 10.3393 -2.5188 -1.4340 24 6 11.4255 -1.4806 -1.7220 25 6 9.9962 -1.2515 -2.2196 26 6 5.5095 -2.4722 0.0002 27 6 4.1530 -2.4351 0.0000 28 6 3.4804 -1.1986 -0.0002 29 7 2.1449 -1.1455 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3635 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6313 2.1444 0.0004 34 1 4.0927 2.1699 0.0010 35 1 6.2148 0.8573 0.0107 36 1 7.8356 -3.3690 0.0006 37 1 11.3573 -3.9654 0.6946 38 1 9.9439 -4.7718 -0.0267 39 1 9.1035 -3.4071 2.3003 40 1 8.2121 -4.5194 5.3161 41 1 10.3811 -3.4575 -1.9865 42 1 11.7725 -0.8707 -0.8879 43 1 12.1819 -1.7362 -2.4642 44 1 9.8127 -1.3563 -3.2889 45 1 9.4021 -0.4908 -1.7131 46 1 6.0161 -3.4260 0.0002 47 1 3.5885 -3.3559 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323086678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:09 Heat of formation + Delta-G solvation = 53.543253 kcal Electronic energy + Delta-G solvation = -28490.412603 eV Core-core repulsion = 24638.966641 eV Total energy + Delta-G solvation = -3851.445962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07250 -39.84154 -37.64370 -36.64598 -35.04268 -33.78976 -33.41342 -32.23213 -31.05736 -30.18717 -28.69585 -27.55112 -24.21383 -24.03019 -23.43330 -22.20846 -22.11616 -21.50986 -20.87904 -20.09230 -18.33566 -17.92784 -17.10626 -16.64262 -15.95360 -15.88791 -15.29328 -14.99167 -14.88299 -14.57360 -14.39785 -13.97286 -13.92975 -13.70470 -13.52244 -13.18288 -13.16570 -13.12049 -12.86824 -12.47469 -12.23551 -12.08947 -11.69957 -11.55347 -11.45280 -11.14701 -11.03738 -10.90915 -10.83833 -10.74414 -10.17288 -10.13748 -9.94735 -9.73685 -9.67795 -9.61414 -8.94239 -8.86771 -8.66857 -8.33574 -6.98497 -5.79767 -3.10029 0.11924 0.55234 1.79279 2.38063 3.30509 3.37474 3.41383 3.47056 3.49360 3.94303 4.01034 4.12369 4.36741 4.48397 4.54040 4.60523 4.76615 4.87252 4.89232 5.02104 5.06688 5.17036 5.18414 5.26695 5.27664 5.29474 5.43805 5.53320 5.61375 5.69771 5.71324 5.78134 5.84377 5.86289 5.89053 5.90454 6.07481 6.16805 6.20787 6.22709 6.34687 6.36707 6.46243 6.51477 6.64098 6.65344 6.90779 7.67096 7.74936 7.80881 8.37577 8.45719 9.49695 10.04822 10.40203 11.42351 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009164 B = 0.003194 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.800570 B = 8763.572301 C =11195.069622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.162 3.838 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.119 4.119 6 C -0.028 4.028 7 C -0.126 4.126 8 C 0.562 3.438 9 O -0.543 6.543 10 N -0.699 5.699 11 C 0.168 3.832 12 H 0.089 0.911 13 C 0.148 3.852 14 N -0.732 5.732 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.163 4.163 24 C -0.170 4.170 25 C -0.185 4.185 26 C -0.066 4.066 27 C -0.100 4.100 28 C 0.150 3.850 29 N -0.479 5.479 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.404 0.596 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.137 0.863 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 10.940 -14.159 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.201 4.201 4 C -0.069 4.069 5 C -0.121 4.121 6 C -0.047 4.047 7 C -0.129 4.129 8 C 0.349 3.651 9 O -0.423 6.423 10 N -0.349 5.349 11 C 0.064 3.936 12 H 0.107 0.893 13 C 0.020 3.980 14 N -0.377 5.377 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.183 4.183 24 C -0.208 4.208 25 C -0.222 4.222 26 C -0.086 4.086 27 C -0.119 4.119 28 C 0.028 3.972 29 N -0.188 5.188 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.240 0.760 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.530 10.606 -14.089 21.069 hybrid contribution 0.290 -0.324 0.818 0.927 sum -11.240 10.282 -13.270 20.202 Atomic orbital electron populations 1.20795 0.88619 1.03765 1.03273 1.21542 0.97192 0.88264 0.92056 1.21688 0.94983 0.99250 1.04134 1.21547 0.94481 0.97291 0.93543 1.18778 0.94402 0.94277 1.04658 1.21401 0.92184 0.98054 0.93105 1.19999 0.93588 0.94018 1.05305 1.18073 0.86884 0.83960 0.76162 1.90673 1.66521 1.34354 1.50732 1.45879 1.07736 1.08086 1.73190 1.20844 0.78912 1.00597 0.93260 0.89258 1.20926 0.96931 0.92137 0.88049 1.42365 1.58373 1.23223 1.13745 1.19245 1.24591 0.96645 0.96900 0.91060 1.24756 1.00108 0.98269 0.97645 1.69681 1.36309 1.33507 1.18234 0.86126 0.77375 0.82439 0.80273 1.20551 1.21869 1.21854 1.22646 1.04202 0.94329 0.97102 1.22894 0.91903 1.02616 1.03388 1.23266 0.99034 1.00600 0.99316 1.21044 0.93842 0.97987 0.95719 1.20662 0.93768 0.96566 1.00889 1.18952 0.89010 0.92943 0.96275 1.67892 1.08420 1.28725 1.13811 0.90111 0.90186 0.90478 0.84467 0.84034 0.83784 0.75990 0.94593 0.95679 0.77998 0.93518 0.87842 0.88724 0.89212 0.89903 0.86508 0.84521 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.14 36.01 0.37 -0.37 16 2 C 0.16 1.69 6.78 -82.50 -0.56 1.13 16 3 C -0.18 -1.60 9.64 -39.78 -0.38 -1.99 16 4 C -0.04 -0.43 9.89 -39.18 -0.39 -0.81 16 5 C -0.12 -1.52 5.74 -106.82 -0.61 -2.13 16 6 C -0.03 -0.37 9.35 -38.74 -0.36 -0.73 16 7 C -0.13 -1.84 5.87 -104.98 -0.62 -2.46 16 8 C 0.56 9.24 7.10 -12.36 -0.09 9.15 16 9 O -0.54 -10.01 13.33 5.32 0.07 -9.94 16 10 N -0.70 -11.19 4.45 -54.77 -0.24 -11.43 16 11 C 0.17 2.81 2.43 -67.93 -0.17 2.65 16 12 H 0.09 1.70 7.34 -51.92 -0.38 1.32 16 13 C 0.15 2.84 5.80 -4.04 -0.02 2.81 16 14 N -0.73 -17.88 5.43 -59.91 -0.33 -18.21 16 15 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C -0.16 -2.30 5.36 -90.62 -0.49 -2.78 16 24 C -0.17 -2.23 10.18 -26.69 -0.27 -2.50 16 25 C -0.19 -2.54 9.74 -26.69 -0.26 -2.80 16 26 C -0.07 -0.88 9.44 -39.59 -0.37 -1.25 16 27 C -0.10 -1.33 9.95 -39.53 -0.39 -1.72 16 28 C 0.15 2.06 6.61 -84.78 -0.56 1.50 16 29 N -0.48 -6.33 10.23 -7.17 -0.07 -6.40 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 33 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 1.80 7.62 -52.48 -0.40 1.40 16 36 H 0.40 6.12 6.59 -40.82 -0.27 5.85 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.39 10.11 7.34 -40.82 -0.30 9.81 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 42 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.12 1.85 5.02 -51.93 -0.26 1.59 16 46 H 0.14 1.66 6.35 -52.49 -0.33 1.33 16 47 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -32.90 390.50 -10.96 -43.87 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -6.55 Total: 15.65 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -5.42 Total: -9.47 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.08 Total: -63.13 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.90 -10.96 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323086678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.408 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds