Wall clock time and date at job start Tue Mar 31 2020 22:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39305 * 119.05785 * 2 1 4 4 C 1.38862 * 119.57877 * 179.72579 * 3 2 1 5 5 C 1.47904 * 121.11075 * 180.25623 * 4 3 2 6 6 O 1.21546 * 119.99944 * 139.69742 * 5 4 3 7 7 N 1.34777 * 120.00215 * 319.68874 * 5 4 3 8 8 C 1.47425 * 125.64209 * 4.37542 * 7 5 4 9 9 C 1.54698 * 104.93781 * 204.07423 * 8 7 5 10 10 C 1.55160 * 101.67618 * 323.28067 * 9 8 7 11 11 C 1.47016 * 125.64976 * 184.68821 * 7 5 4 12 12 H 1.09001 * 109.88944 * 59.48386 * 11 7 5 13 13 C 1.53009 * 109.88127 * 298.31611 * 11 7 5 14 14 N 1.46506 * 109.46526 * 76.01998 * 13 11 7 15 15 C 1.36939 * 119.99548 * 187.07135 * 14 13 11 16 16 H 1.08000 * 119.99776 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99713 * 180.02562 * 15 14 13 18 18 N 1.31609 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99598 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47350 * 119.99710 * 19 17 15 22 22 H 1.48504 * 109.46784 * 239.99678 * 19 17 15 23 23 C 1.41819 * 117.77521 * 0.26678 * 4 3 2 24 24 C 1.40098 * 121.37081 * 180.02562 * 23 4 3 25 25 C 1.36260 * 119.64140 * 179.97438 * 24 23 4 26 26 C 1.39339 * 120.83509 * 0.02562 * 25 24 23 27 27 C 1.36069 * 121.05361 * 359.97322 * 26 25 24 28 28 C 1.40702 * 119.73547 * 0.04921 * 27 26 25 29 29 N 1.30970 * 119.05955 * 180.34013 * 2 1 3 30 30 H 1.09000 * 109.46877 * 90.00208 * 1 2 3 31 31 H 1.09000 * 109.47099 * 210.00082 * 1 2 3 32 32 H 1.08993 * 109.47127 * 330.00124 * 1 2 3 33 33 H 1.08004 * 120.21481 * 359.97438 * 3 2 1 34 34 H 1.08996 * 110.37087 * 323.00357 * 8 7 5 35 35 H 1.08998 * 110.36754 * 85.33163 * 8 7 5 36 36 H 1.09000 * 111.09755 * 205.11252 * 9 8 7 37 37 H 1.08996 * 110.84636 * 81.33969 * 9 8 7 38 38 H 1.09005 * 110.71606 * 276.97545 * 10 9 8 39 39 H 1.08995 * 110.71655 * 153.70305 * 10 9 8 40 40 H 1.09000 * 109.46857 * 196.01661 * 13 11 7 41 41 H 1.08999 * 109.46815 * 316.02213 * 13 11 7 42 42 H 0.96995 * 120.00482 * 7.06279 * 14 13 11 43 43 H 0.97000 * 120.00196 * 180.02562 * 18 17 15 44 44 H 1.07994 * 120.18353 * 0.02562 * 24 23 4 45 45 H 1.07999 * 119.58082 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.47789 * 179.97438 * 26 25 24 47 47 H 1.07991 * 120.13138 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1836 1.2177 0.0000 4 6 3.5722 1.2303 0.0058 5 6 4.3248 2.5035 0.0116 6 8 5.3223 2.6167 0.6969 7 7 3.9047 3.5382 -0.7430 8 6 2.6688 3.5698 -1.5461 9 6 2.9363 4.6217 -2.6483 10 6 3.7695 5.6795 -1.8774 11 6 4.6063 4.8198 -0.9067 12 1 5.5985 4.6487 -1.3242 13 6 4.7224 5.5259 0.4458 14 7 5.7707 4.8843 1.2431 15 6 5.9588 5.2512 2.5489 16 1 5.3346 6.0138 2.9908 17 6 6.9525 4.6437 3.3043 18 7 7.7134 3.7149 2.7655 19 14 7.2095 5.1448 5.0854 20 1 6.2320 6.2022 5.4481 21 1 7.0121 3.9648 5.9650 22 1 8.5892 5.6661 5.2587 23 6 4.2445 -0.0184 0.0057 24 6 5.6434 -0.0935 0.0118 25 6 6.2528 -1.3122 0.0120 26 6 5.5022 -2.4861 0.0056 27 6 4.1420 -2.4495 -0.0004 28 6 3.4773 -1.2093 -0.0013 29 7 2.1432 -1.1448 -0.0068 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6318 2.1461 -0.0004 34 1 2.4806 2.5928 -1.9912 35 1 1.8236 3.8760 -0.9298 36 1 2.0040 5.0508 -3.0157 37 1 3.5137 4.1893 -3.4654 38 1 3.1173 6.3580 -1.3274 39 1 4.4163 6.2322 -2.5587 40 1 4.9762 6.5741 0.2877 41 1 3.7713 5.4579 0.9739 42 1 6.3315 4.1997 0.8461 43 1 8.4075 3.2901 3.2934 44 1 6.2357 0.8095 0.0172 45 1 7.3313 -1.3690 0.0163 46 1 6.0080 -3.4404 0.0055 47 1 3.5749 -3.3685 -0.0049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324275808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:47 Heat of formation + Delta-G solvation = 57.407665 kcal Electronic energy + Delta-G solvation = -30122.847749 eV Core-core repulsion = 26271.569361 eV Total energy + Delta-G solvation = -3851.278388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.06962 -39.61982 -37.33144 -37.07953 -34.39555 -33.28514 -32.01847 -31.53305 -31.23212 -29.83112 -28.71397 -27.78835 -25.30435 -24.46501 -23.32062 -22.67917 -22.40125 -21.43754 -20.75054 -18.73906 -18.11662 -17.46088 -17.04754 -16.48575 -16.39340 -15.39970 -14.84193 -14.81658 -14.62507 -14.35477 -14.14629 -13.75402 -13.62036 -13.48044 -13.20815 -13.09454 -13.04234 -12.92270 -12.82593 -12.46065 -12.24222 -11.78097 -11.58985 -11.41510 -11.37713 -11.28923 -11.19201 -11.12313 -10.72733 -10.64890 -10.49042 -10.33440 -10.02643 -9.73804 -9.49226 -8.93791 -8.68466 -8.64329 -8.23197 -8.12476 -6.59509 -5.49218 -2.75718 0.28082 0.83296 1.89527 2.88078 3.13510 3.32212 3.54270 3.59065 3.61509 4.09666 4.17283 4.38644 4.53588 4.63059 4.74916 4.76321 4.86013 4.92058 4.92812 5.12083 5.21090 5.29701 5.34240 5.37449 5.41151 5.43094 5.52110 5.53911 5.69232 5.72059 5.78376 5.83337 5.84330 5.87128 5.96072 6.02650 6.09713 6.16413 6.19667 6.39868 6.41226 6.56239 6.60928 6.64196 6.79919 6.92651 6.95711 7.82291 7.88366 7.90516 8.55893 8.75170 9.81601 10.45819 10.84532 11.72112 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.004686 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.449080 B = 5973.326441 C = 7741.422639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.153 3.847 3 C -0.153 4.153 4 C -0.038 4.038 5 C 0.547 3.453 6 O -0.436 6.436 7 N -0.610 5.610 8 C 0.096 3.904 9 C -0.133 4.133 10 C -0.124 4.124 11 C 0.131 3.869 12 H 0.075 0.925 13 C 0.146 3.854 14 N -0.718 5.718 15 C -0.235 4.235 16 H 0.061 0.939 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.895 3.105 20 H -0.283 1.283 21 H -0.295 1.295 22 H -0.294 1.294 23 C -0.075 4.075 24 C -0.075 4.075 25 C -0.123 4.123 26 C -0.094 4.094 27 C -0.107 4.107 28 C 0.133 3.867 29 N -0.471 5.471 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.397 0.603 43 H 0.248 0.752 44 H 0.150 0.850 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 -7.439 -14.284 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.001 3.999 3 C -0.173 4.173 4 C -0.050 4.050 5 C 0.332 3.668 6 O -0.304 6.304 7 N -0.347 5.347 8 C -0.027 4.027 9 C -0.171 4.171 10 C -0.162 4.162 11 C 0.028 3.972 12 H 0.093 0.907 13 C 0.016 3.984 14 N -0.369 5.369 15 C -0.367 4.367 16 H 0.079 0.921 17 C -0.206 4.206 18 N -0.565 5.565 19 Si 0.727 3.273 20 H -0.209 1.209 21 H -0.222 1.222 22 H -0.221 1.221 23 C -0.077 4.077 24 C -0.094 4.094 25 C -0.141 4.141 26 C -0.113 4.113 27 C -0.125 4.125 28 C 0.011 3.989 29 N -0.181 5.181 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.238 0.762 43 H 0.058 0.942 44 H 0.168 0.832 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.471 -8.230 -13.682 20.890 hybrid contribution 0.684 0.843 1.119 1.560 sum -12.787 -7.387 -12.562 19.388 Atomic orbital electron populations 1.20761 0.88426 1.03749 1.03184 1.21351 0.97051 0.87780 0.93741 1.22310 0.93618 0.99710 1.01702 1.20532 0.93820 0.93620 0.96994 1.17798 0.85943 0.82130 0.80887 1.91056 1.23379 1.79917 1.36080 1.48324 1.23770 1.14819 1.47791 1.22395 0.87966 0.99774 0.92582 1.22736 1.00750 0.96277 0.97324 1.22643 0.98750 0.97314 0.97514 1.21935 0.95701 0.82511 0.97024 0.90666 1.20980 0.93422 0.94544 0.89409 1.42750 1.37719 1.46464 1.09921 1.19162 1.12907 1.16268 0.88370 0.92082 1.24644 0.99258 0.99158 0.97498 1.69727 1.22944 1.28655 1.35128 0.86291 0.77289 0.77379 0.86298 1.20880 1.22202 1.22130 1.18628 0.95069 0.92132 1.01896 1.21480 0.93009 0.99843 0.95048 1.21017 1.00655 0.92084 1.00356 1.20943 0.93698 0.98711 0.97989 1.20694 0.94160 0.95893 1.01791 1.18757 0.88722 0.92806 0.98569 1.67596 1.08795 1.28762 1.12990 0.90173 0.90282 0.90452 0.84004 0.90881 0.91541 0.89992 0.90755 0.90266 0.90049 0.96391 0.96361 0.76189 0.94189 0.83227 0.85288 0.85397 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.14 36.01 0.37 -0.53 16 2 C 0.15 1.99 6.78 -82.56 -0.56 1.43 16 3 C -0.15 -2.10 7.68 -38.95 -0.30 -2.40 16 4 C -0.04 -0.65 5.46 -104.34 -0.57 -1.22 16 5 C 0.55 10.57 6.98 -12.30 -0.09 10.48 16 6 O -0.44 -10.67 11.07 5.33 0.06 -10.61 16 7 N -0.61 -9.76 3.07 -164.23 -0.50 -10.27 16 8 C 0.10 1.06 5.24 -2.64 -0.01 1.05 16 9 C -0.13 -1.20 7.07 -24.69 -0.17 -1.38 16 10 C -0.12 -1.39 6.44 -24.90 -0.16 -1.55 16 11 C 0.13 2.16 3.08 -66.95 -0.21 1.96 16 12 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 13 C 0.15 3.07 5.61 -4.03 -0.02 3.05 16 14 N -0.72 -19.47 4.10 -59.90 -0.25 -19.71 16 15 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 16 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.92 -29.39 13.06 55.49 0.72 -28.66 16 19 Si 0.90 23.81 29.55 -169.99 -5.02 18.78 16 20 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 22 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 23 C -0.07 -1.29 5.76 -106.52 -0.61 -1.90 16 24 C -0.08 -1.31 9.18 -39.60 -0.36 -1.67 16 25 C -0.12 -1.76 9.96 -39.88 -0.40 -2.16 16 26 C -0.09 -1.15 9.94 -39.95 -0.40 -1.55 16 27 C -0.11 -1.43 9.98 -39.43 -0.39 -1.82 16 28 C 0.13 2.10 6.61 -84.87 -0.56 1.54 16 29 N -0.47 -7.02 10.19 -7.25 -0.07 -7.10 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.14 1.61 5.98 -52.48 -0.31 1.30 16 34 H 0.07 0.75 6.77 -51.93 -0.35 0.39 16 35 H 0.07 0.66 7.36 -51.93 -0.38 0.28 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.40 11.47 5.15 -40.82 -0.21 11.26 16 43 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.15 2.96 5.98 -52.49 -0.31 2.65 16 45 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -37.10 376.27 -10.68 -47.79 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.59 Total: 8.37 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -4.70 Total: -4.25 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.10 Total: -65.74 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.06 Total: -10.61 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.10 -10.68 -47.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324275808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.194 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds